Wall clock time and date at job start Mon Mar 8 2021 14:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.38703 * 120.01212 * 284.72614 * 4 2 1 6 6 O 1.35919 * 120.03963 * 0.02562 * 5 4 2 7 7 C 1.42901 * 117.00144 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46851 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47308 * 55.00556 * 8 7 6 10 10 C 1.52995 * 109.46856 * 175.00554 * 8 7 6 11 11 C 1.53009 * 109.47392 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46736 * 300.00115 * 11 10 8 13 13 H 1.09000 * 109.47238 * 299.99601 * 12 11 10 14 14 O 1.42904 * 109.46788 * 179.97438 * 12 11 10 15 15 C 1.52995 * 109.47274 * 59.99813 * 12 11 10 16 16 C 1.53001 * 109.47366 * 299.99519 * 15 12 11 17 17 C 1.38730 * 119.92302 * 179.79182 * 5 4 2 18 18 C 1.38205 * 119.94582 * 0.46315 * 17 5 4 19 19 Br 1.89109 * 119.98504 * 179.76964 * 18 17 5 20 20 C 1.38476 * 120.02530 * 359.78712 * 18 17 5 21 21 Cl 1.73603 * 119.96228 * 179.97438 * 20 18 17 22 22 C 1.38178 * 120.01179 * 105.00225 * 4 2 1 23 23 H 0.96701 * 113.99881 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 25 25 H 1.48494 * 109.99914 * 58.68020 * 3 2 1 26 26 H 1.48493 * 110.00101 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47652 * 300.00780 * 7 6 5 28 28 H 1.08998 * 109.46640 * 60.01072 * 7 6 5 29 29 H 1.09006 * 109.47356 * 299.99715 * 10 8 7 30 30 H 1.09003 * 109.47853 * 59.99679 * 10 8 7 31 31 H 1.09000 * 109.46931 * 59.99904 * 11 10 8 32 32 H 1.08998 * 109.47481 * 179.97438 * 11 10 8 33 33 H 0.96697 * 113.99856 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47161 * 59.99741 * 15 12 11 35 35 H 1.09000 * 109.47101 * 179.97438 * 15 12 11 36 36 H 1.08995 * 109.46943 * 300.00647 * 16 15 12 37 37 H 1.08992 * 109.47265 * 179.97438 * 16 15 12 38 38 H 1.08008 * 120.02702 * 180.20675 * 17 5 4 39 39 H 1.08000 * 119.97244 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.8747 -2.0943 -1.3042 6 8 1.3658 -2.8107 -0.2673 7 6 1.3380 -4.2321 -0.4126 8 6 0.7356 -4.8615 0.8452 9 1 -0.2447 -4.4249 1.0361 10 6 0.5907 -6.3708 0.6408 11 6 -0.0111 -7.0004 1.8987 12 6 0.9080 -6.7333 3.0924 13 1 1.8883 -7.1698 2.9010 14 8 0.3457 -7.3209 4.2674 15 6 1.0529 -5.2240 3.2967 16 6 1.6548 -4.5944 2.0389 17 6 2.3336 -2.7462 -2.4396 18 6 2.8550 -2.0161 -3.4909 19 35 3.4869 -2.9040 -5.0365 20 6 2.9153 -0.6349 -3.4128 21 17 3.5713 0.2804 -4.7341 22 6 2.4537 0.0163 -2.2832 23 1 -0.3933 -0.8834 0.0004 24 1 1.7923 -0.5139 0.8900 25 1 1.5355 2.4771 1.1921 26 1 3.5349 1.7701 -0.0006 27 1 0.7305 -4.4972 -1.2778 28 1 2.3532 -4.6027 -0.5541 29 1 -0.0638 -6.5611 -0.2099 30 1 1.5710 -6.8075 0.4497 31 1 -0.9914 -6.5640 2.0901 32 1 -0.1147 -8.0757 1.7530 33 1 0.8764 -7.1902 5.0650 34 1 0.0726 -4.7875 3.4881 35 1 1.7073 -5.0337 4.1474 36 1 2.6350 -5.0309 1.8475 37 1 1.7575 -3.5191 2.1843 38 1 2.2872 -3.8235 -2.5002 39 1 2.5014 1.0936 -2.2241 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15163260_16737254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:37:48 Heat of formation + Delta-G solvation = -109.217850 kcal Electronic energy + Delta-G solvation = -24376.660842 eV Core-core repulsion = 20550.622053 eV Total energy + Delta-G solvation = -3826.038789 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.011 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82393 -40.23164 -38.97646 -37.94900 -37.24304 -36.68212 -33.91466 -32.17337 -31.85218 -31.31854 -30.67437 -26.94418 -26.54072 -24.02474 -23.78244 -22.82358 -22.10024 -20.88250 -19.37616 -18.45455 -18.23776 -17.94580 -17.41026 -17.11546 -16.51749 -15.89833 -15.65554 -15.59758 -15.49389 -15.17120 -14.93762 -14.66057 -14.38414 -14.15781 -13.88361 -13.60877 -13.40500 -13.23267 -13.00202 -12.85444 -12.51218 -12.35194 -12.27309 -12.18396 -12.11571 -11.72226 -11.68635 -11.47848 -11.43662 -11.28920 -11.20309 -11.11322 -10.74659 -10.15601 -9.38756 -4.95060 -0.41479 -0.14824 0.26293 0.97306 1.29334 1.57548 1.87207 1.91447 2.08784 3.19461 3.34467 3.36680 3.60279 3.62755 3.67741 3.73836 3.82599 3.98871 4.02443 4.11876 4.13400 4.21736 4.27561 4.30967 4.32954 4.45058 4.46326 4.52741 4.55751 4.61688 4.77700 4.80184 4.95017 5.03728 5.06304 5.10312 5.13821 5.16193 5.29485 5.40867 6.04599 6.55126 6.82352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.072 4.072 3 Si 0.793 3.207 4 C -0.127 4.127 5 C 0.155 3.845 6 O -0.308 6.308 7 C 0.054 3.946 8 C -0.081 4.081 9 H 0.081 0.919 10 C -0.104 4.104 11 C -0.114 4.114 12 C 0.100 3.900 13 H 0.062 0.938 14 O -0.591 6.591 15 C -0.147 4.147 16 C -0.109 4.109 17 C -0.168 4.168 18 C -0.053 4.053 19 Br -0.021 7.021 20 C -0.057 4.057 21 Cl -0.044 7.044 22 C -0.059 4.059 23 H 0.376 0.624 24 H 0.080 0.920 25 H -0.290 1.290 26 H -0.260 1.260 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.392 0.608 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.166 0.834 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 -1.894 0.260 2.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.180 4.180 3 Si 0.695 3.305 4 C -0.129 4.129 5 C 0.108 3.892 6 O -0.221 6.221 7 C -0.020 4.020 8 C -0.100 4.100 9 H 0.099 0.901 10 C -0.142 4.142 11 C -0.151 4.151 12 C 0.041 3.959 13 H 0.080 0.920 14 O -0.400 6.400 15 C -0.185 4.185 16 C -0.147 4.147 17 C -0.188 4.188 18 C -0.134 4.134 19 Br 0.065 6.935 20 C -0.086 4.086 21 Cl -0.014 7.014 22 C -0.078 4.078 23 H 0.225 0.775 24 H 0.098 0.902 25 H -0.217 1.217 26 H -0.186 1.186 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.242 0.758 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.183 0.817 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.062 -1.055 -0.259 1.519 hybrid contribution 0.360 -1.357 1.213 1.855 sum 1.422 -2.412 0.953 2.957 Atomic orbital electron populations 1.86719 1.16797 1.34244 1.97087 1.25404 0.84951 1.13202 0.94462 0.92305 0.77223 0.74492 0.86529 1.19824 1.03641 0.91104 0.98342 1.18733 0.92952 0.90611 0.86949 1.86068 1.76922 1.21257 1.37880 1.23209 1.02493 0.76358 0.99923 1.21173 1.00091 0.95717 0.92984 0.90074 1.21441 1.02584 0.92700 0.97434 1.21465 0.98963 1.01424 0.93271 1.21934 0.96415 0.91939 0.85579 0.92048 1.86485 1.53941 1.79559 1.19985 1.22216 1.01697 0.95855 0.98751 1.21494 0.98743 1.00931 0.93487 1.21333 1.03402 1.01826 0.92258 1.21718 1.03415 0.92825 0.95463 1.96845 1.86622 1.76767 1.33227 1.20676 1.04705 0.90653 0.92591 1.98413 1.84089 1.73295 1.45644 1.20885 0.95885 1.00943 0.90055 0.77504 0.90229 1.21720 1.18555 0.89945 0.90405 0.89678 0.90329 0.91962 0.91295 0.75795 0.92037 0.91056 0.91161 0.91657 0.81669 0.81409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.80 12.65 -148.98 -1.89 -2.68 16 2 C -0.07 0.00 2.33 71.24 0.17 0.16 16 3 Si 0.79 -0.42 30.17 68.60 2.07 1.65 16 4 C -0.13 0.01 5.28 -19.77 -0.10 -0.10 16 5 C 0.16 -0.16 6.62 22.50 0.15 -0.01 16 6 O -0.31 0.91 8.59 -92.63 -0.80 0.11 16 7 C 0.05 -0.38 4.12 71.98 0.30 -0.08 16 8 C -0.08 0.51 2.43 -10.79 -0.03 0.49 16 9 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 10 C -0.10 0.73 5.20 30.60 0.16 0.89 16 11 C -0.11 0.29 5.57 30.60 0.17 0.46 16 12 C 0.10 -0.21 3.47 30.59 0.11 -0.10 16 13 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 14 O -0.59 -0.77 13.32 -148.98 -1.98 -2.75 16 15 C -0.15 0.50 5.54 30.59 0.17 0.67 16 16 C -0.11 0.53 5.10 30.60 0.16 0.68 16 17 C -0.17 0.26 8.78 22.38 0.20 0.46 16 18 C -0.05 -0.07 6.23 22.32 0.14 0.07 16 19 Br -0.02 -0.03 32.52 -20.37 -0.66 -0.69 16 20 C -0.06 -0.10 6.32 22.34 0.14 0.04 16 21 Cl -0.04 -0.10 27.74 -2.72 -0.08 -0.17 16 22 C -0.06 0.02 8.44 22.27 0.19 0.20 16 23 H 0.38 -0.97 8.64 -74.06 -0.64 -1.61 16 24 H 0.08 0.00 7.82 -2.39 -0.02 -0.02 16 25 H -0.29 -1.78 7.11 99.48 0.71 -1.07 16 26 H -0.26 -0.45 7.11 99.48 0.71 0.26 16 27 H 0.08 -0.74 7.65 -2.39 -0.02 -0.76 16 28 H 0.08 -0.66 7.67 -2.39 -0.02 -0.67 16 29 H 0.08 -0.73 8.14 -2.38 -0.02 -0.74 16 30 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.39 -2.44 9.08 -74.06 -0.67 -3.11 16 34 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.06 -0.19 7.82 -2.39 -0.02 -0.21 16 38 H 0.17 -0.92 6.30 -2.91 -0.02 -0.94 16 39 H 0.17 -0.72 5.13 -2.91 -0.01 -0.74 16 Total: 0.00 -11.03 348.02 -1.61 -12.64 By element: Atomic # 1 Polarization: -11.75 SS G_CDS: -0.18 Total: -11.93 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 1.91 Total: 3.84 kcal Atomic # 8 Polarization: -0.65 SS G_CDS: -4.67 Total: -5.32 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: 2.07 Total: 1.65 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.17 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.66 Total: -0.69 kcal Total: -11.03 -1.61 -12.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_16737254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.579 kcal (2) G-P(sol) polarization free energy of solvation -11.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds