Wall clock time and date at job start Mon Mar 8 2021 13:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86309 * 1 3 3 C 1.86302 * 109.46793 * 2 1 4 4 C 1.86297 * 109.47217 * 240.00073 * 2 1 3 5 5 C 1.86302 * 109.46814 * 119.99776 * 2 1 3 6 6 O 1.42898 * 109.47039 * 66.15435 * 5 2 1 7 7 C 1.35927 * 116.99817 * 77.74542 * 6 5 2 8 8 C 1.38679 * 120.03779 * 6.20010 * 7 6 5 9 9 C 1.38252 * 119.94592 * 179.97438 * 8 7 6 10 10 Br 1.89108 * 119.98803 * 179.97438 * 9 8 7 11 11 C 1.38432 * 120.02411 * 359.97438 * 9 8 7 12 12 Cl 1.73602 * 119.96380 * 180.02562 * 11 9 8 13 13 C 1.38366 * 120.07644 * 0.04069 * 11 9 8 14 14 C 1.38130 * 120.05285 * 359.97438 * 13 11 9 15 15 C 1.50699 * 120.01432 * 179.97438 * 14 13 11 16 16 O 1.42903 * 109.46849 * 104.99989 * 15 14 13 17 17 Si 1.86300 * 109.46960 * 345.00229 * 15 14 13 18 18 H 1.48502 * 109.47176 * 59.99935 * 17 15 14 19 19 H 1.48497 * 109.46980 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47058 * 299.99633 * 17 15 14 21 21 H 1.08994 * 109.47487 * 299.99904 * 1 2 3 22 22 H 1.09001 * 109.46732 * 60.00361 * 1 2 3 23 23 H 1.09001 * 109.46727 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46698 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47327 * 300.00130 * 3 2 1 26 26 H 1.09005 * 109.47310 * 60.00188 * 3 2 1 27 27 H 1.08998 * 109.47202 * 294.72953 * 4 2 1 28 28 H 1.09003 * 109.46932 * 54.72787 * 4 2 1 29 29 H 1.09001 * 109.47029 * 174.72861 * 4 2 1 30 30 H 1.08998 * 109.47203 * 306.15143 * 5 2 1 31 31 H 1.09000 * 109.46574 * 186.14885 * 5 2 1 32 32 H 1.07994 * 120.03025 * 0.02562 * 8 7 6 33 33 H 1.08000 * 119.97591 * 179.70469 * 13 11 9 34 34 H 1.08997 * 109.47439 * 225.00202 * 15 14 13 35 35 H 0.96699 * 113.99906 * 60.00614 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 8 2.1292 -2.2607 1.4513 7 6 2.8832 -3.0510 0.6423 8 6 4.0178 -2.5378 0.0319 9 6 4.7836 -3.3436 -0.7901 10 35 6.3305 -2.6447 -1.6236 11 6 4.4183 -4.6617 -1.0033 12 17 5.3815 -5.6722 -2.0353 13 6 3.2864 -5.1747 -0.3950 14 6 2.5188 -4.3724 0.4266 15 6 1.2857 -4.9318 1.0882 16 8 1.5522 -5.1648 2.4727 17 14 0.8148 -6.5368 0.2678 18 1 1.9312 -7.5069 0.4007 19 1 -0.3999 -7.0883 0.9201 20 1 0.5379 -6.2947 -1.1709 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.5740 1.7565 0.0005 25 1 2.1206 2.2704 -0.8900 26 1 2.1207 2.2704 0.8900 27 1 2.1999 -1.9295 -1.4752 28 1 2.0457 -0.4217 -2.4086 29 1 3.5700 -0.7971 -1.5695 30 1 2.0335 -0.4319 2.4077 31 1 3.5684 -0.7838 1.5779 32 1 4.3034 -1.5099 0.1992 33 1 3.0003 -6.2019 -0.5662 34 1 0.4662 -4.2198 0.9907 35 1 1.8041 -4.3707 2.9638 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15163260_3095236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:31:52 Heat of formation + Delta-G solvation = -73.751117 kcal Electronic energy + Delta-G solvation = -19772.716291 eV Core-core repulsion = 16581.529923 eV Total energy + Delta-G solvation = -3191.186368 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 351.981 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.79542 -38.98134 -37.91372 -37.20458 -33.93935 -31.59818 -31.02421 -29.65504 -28.37538 -28.31180 -27.86582 -26.51028 -23.66386 -22.75851 -19.36648 -18.43642 -18.00906 -17.34806 -16.90041 -16.39217 -15.73816 -15.54510 -15.13576 -14.91973 -14.53370 -14.10764 -13.94269 -13.81873 -13.73492 -13.55715 -13.37967 -13.23776 -13.20160 -13.02186 -12.55767 -12.45564 -12.35739 -12.28547 -11.94011 -11.85511 -11.39311 -11.23556 -11.07633 -10.87101 -10.79270 -10.67631 -10.07379 -9.17744 -0.38743 -0.14160 0.27129 0.96248 1.13763 1.46406 1.48480 1.52658 1.70607 1.81889 1.92327 2.11896 2.28177 2.56070 3.34512 3.39665 3.70887 3.88696 4.02614 4.15775 4.20817 4.31469 4.53689 4.61446 4.72911 4.74763 4.78442 4.81001 4.83076 4.83838 4.84876 4.89024 5.13038 5.53878 5.61848 5.63619 6.07575 6.63917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.051 2.949 3 C -0.458 4.458 4 C -0.472 4.472 5 C -0.266 4.266 6 O -0.285 6.285 7 C 0.153 3.847 8 C -0.162 4.162 9 C -0.053 4.053 10 Br -0.022 7.022 11 C -0.059 4.059 12 Cl -0.051 7.051 13 C -0.080 4.080 14 C -0.128 4.128 15 C -0.081 4.081 16 O -0.547 6.547 17 Si 1.011 2.989 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.236 1.236 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.153 0.847 34 H 0.101 0.899 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 4.653 1.130 5.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.244 2.756 3 C -0.566 4.566 4 C -0.577 4.577 5 C -0.385 4.385 6 O -0.197 6.197 7 C 0.105 3.895 8 C -0.182 4.182 9 C -0.134 4.134 10 Br 0.064 6.936 11 C -0.088 4.088 12 Cl -0.022 7.022 13 C -0.099 4.099 14 C -0.129 4.129 15 C -0.190 4.190 16 O -0.354 6.354 17 Si 0.832 3.168 18 H -0.185 1.185 19 H -0.188 1.188 20 H -0.158 1.158 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.105 0.895 32 H 0.189 0.811 33 H 0.170 0.830 34 H 0.119 0.881 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.904 3.399 0.313 3.908 hybrid contribution 0.407 0.862 0.332 1.010 sum -1.497 4.261 0.645 4.562 Atomic orbital electron populations 1.26221 1.21186 1.04552 1.04793 0.78899 0.66823 0.65961 0.63955 1.26168 1.06792 1.18467 1.05193 1.26718 1.06529 1.07855 1.16636 1.28580 1.07148 0.83134 1.19614 1.86037 1.52269 1.21009 1.60354 1.18713 0.89806 0.90284 0.90679 1.21383 0.95190 1.02056 0.99555 1.21630 0.96526 0.93807 1.01469 1.96828 1.32624 1.84970 1.79133 1.20631 0.96451 0.91378 1.00294 1.98401 1.70308 1.67906 1.65555 1.20962 0.92625 1.00700 0.95615 1.19778 1.00112 0.91917 1.01143 1.25211 0.95351 1.12615 0.85816 1.86686 1.91397 1.38555 1.18791 0.84515 0.79652 0.74001 0.78623 1.18465 1.18838 1.15822 0.90619 0.91211 0.91397 0.90611 0.90888 0.90366 0.92037 0.90790 0.90882 0.84710 0.89540 0.81114 0.83009 0.88144 0.77025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.54 8.65 113.37 0.98 3.52 16 2 Si 1.05 -9.10 11.68 68.60 0.80 -8.30 16 3 C -0.46 3.51 8.65 113.37 0.98 4.49 16 4 C -0.47 1.94 7.03 113.37 0.80 2.74 16 5 C -0.27 2.21 5.31 113.37 0.60 2.81 16 6 O -0.28 1.05 8.70 -92.72 -0.81 0.24 16 7 C 0.15 -0.12 5.09 22.50 0.11 0.00 16 8 C -0.16 0.15 5.34 22.38 0.12 0.27 16 9 C -0.05 -0.13 6.23 22.32 0.14 0.00 16 10 Br -0.02 -0.05 32.52 -20.37 -0.66 -0.72 16 11 C -0.06 -0.24 6.32 22.35 0.14 -0.10 16 12 Cl -0.05 -0.25 27.73 -2.72 -0.08 -0.33 16 13 C -0.08 -0.22 8.44 22.27 0.19 -0.04 16 14 C -0.13 -0.14 5.28 -19.77 -0.10 -0.25 16 15 C -0.08 0.01 2.33 71.24 0.17 0.17 16 16 O -0.55 -0.96 12.65 -148.98 -1.89 -2.84 16 17 Si 1.01 0.83 25.74 68.60 1.77 2.60 16 18 H -0.26 -0.70 6.73 99.48 0.67 -0.03 16 19 H -0.26 -0.80 7.11 99.48 0.71 -0.10 16 20 H -0.24 0.15 7.11 99.48 0.71 0.86 16 21 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 22 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 23 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 24 H 0.07 -0.61 7.96 -2.39 -0.02 -0.63 16 25 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 26 H 0.08 -0.65 7.96 -2.38 -0.02 -0.67 16 27 H 0.06 -0.11 6.24 -2.39 -0.01 -0.12 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.07 -0.29 6.55 -2.39 -0.02 -0.31 16 30 H 0.13 -1.56 7.96 -2.39 -0.02 -1.58 16 31 H 0.09 -0.86 6.07 -2.39 -0.01 -0.88 16 32 H 0.17 -0.94 4.75 -2.91 -0.01 -0.95 16 33 H 0.15 0.19 4.88 -2.91 -0.01 0.18 16 34 H 0.10 -0.35 7.83 -2.39 -0.02 -0.37 16 35 H 0.38 -1.17 8.60 -74.06 -0.64 -1.80 16 Total: 0.00 -8.52 317.29 4.47 -4.06 By element: Atomic # 1 Polarization: -9.55 SS G_CDS: 1.20 Total: -8.34 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 4.12 Total: 13.63 kcal Atomic # 8 Polarization: 0.09 SS G_CDS: -2.69 Total: -2.60 kcal Atomic # 14 Polarization: -8.27 SS G_CDS: 2.57 Total: -5.70 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.66 Total: -0.72 kcal Total: -8.52 4.47 -4.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_3095236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.694 kcal (2) G-P(sol) polarization free energy of solvation -8.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds