Wall clock time and date at job start Mon Mar 8 2021 14:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.46854 * 2 1 4 4 C 1.86298 * 109.46924 * 240.00247 * 2 1 3 5 5 C 1.86798 * 109.47047 * 120.00218 * 2 1 3 6 6 C 1.38230 * 120.00344 * 90.00138 * 5 2 1 7 7 C 1.38230 * 120.00351 * 180.02562 * 6 5 2 8 8 C 1.38237 * 120.00004 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.99936 * 179.97438 * 8 7 6 10 10 O 1.42903 * 109.47233 * 89.99627 * 9 8 7 11 11 C 1.35922 * 117.00083 * 179.97438 * 10 9 8 12 12 C 1.38691 * 120.03576 * 0.02562 * 11 10 9 13 13 C 1.38255 * 119.94356 * 179.97438 * 12 11 10 14 14 Br 1.89097 * 119.98469 * 180.02562 * 13 12 11 15 15 C 1.38429 * 120.02340 * 359.97438 * 13 12 11 16 16 Cl 1.73606 * 119.96045 * 179.97438 * 15 13 12 17 17 C 1.38360 * 120.07692 * 0.02562 * 15 13 12 18 18 C 1.38130 * 120.05659 * 359.97438 * 17 15 13 19 19 C 1.50693 * 120.01538 * 180.02562 * 18 17 15 20 20 O 1.42898 * 109.47772 * 104.99783 * 19 18 17 21 21 Si 1.86308 * 109.47104 * 344.99765 * 19 18 17 22 22 H 1.48493 * 109.46989 * 59.99795 * 21 19 18 23 23 H 1.48501 * 109.46859 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46739 * 299.99780 * 21 19 18 25 25 C 1.38234 * 119.99802 * 0.24632 * 8 7 6 26 26 C 1.38234 * 119.99826 * 359.49838 * 25 8 7 27 27 H 1.09000 * 109.47025 * 299.99815 * 1 2 3 28 28 H 1.08998 * 109.47518 * 59.99562 * 1 2 3 29 29 H 1.08996 * 109.47335 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46686 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47229 * 299.99740 * 3 2 1 32 32 H 1.09000 * 109.47153 * 60.00263 * 3 2 1 33 33 H 1.09004 * 109.47201 * 299.99996 * 4 2 1 34 34 H 1.08999 * 109.47124 * 60.00275 * 4 2 1 35 35 H 1.08998 * 109.47011 * 180.02562 * 4 2 1 36 36 H 1.08009 * 119.99447 * 359.97438 * 6 5 2 37 37 H 1.08003 * 119.99854 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47452 * 329.99269 * 9 8 7 39 39 H 1.09001 * 109.47265 * 209.99604 * 9 8 7 40 40 H 1.07997 * 120.03075 * 0.25655 * 12 11 10 41 41 H 1.08007 * 119.97292 * 180.02562 * 17 15 13 42 42 H 1.09004 * 109.47479 * 225.00045 * 19 18 17 43 43 H 0.96708 * 113.99349 * 300.00403 * 20 19 18 44 44 H 1.08000 * 120.00070 * 179.72371 * 25 8 7 45 45 H 1.08002 * 119.99661 * 180.23004 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7161 -2.2432 1.4910 7 6 3.1763 -2.8949 2.6197 8 6 3.4057 -2.1842 3.7830 9 6 3.9068 -2.8948 5.0137 10 8 5.3359 -2.8950 5.0150 11 6 5.9520 -3.5003 6.0645 12 6 5.1964 -4.0822 7.0715 13 6 5.8251 -4.6979 8.1379 14 35 4.7961 -5.4924 9.5111 15 6 7.2075 -4.7338 8.2001 16 17 7.9952 -5.5067 9.5403 17 6 7.9622 -4.1535 7.1961 18 6 7.3374 -3.5376 6.1292 19 6 8.1603 -2.9064 5.0358 20 8 8.1284 -3.7386 3.8746 21 14 9.9208 -2.7156 5.6149 22 1 10.4798 -4.0506 5.9473 23 1 10.7314 -2.0930 4.5377 24 1 9.9539 -1.8506 6.8215 25 6 3.1699 -0.8226 3.8189 26 6 2.7147 -0.1700 2.6885 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7565 0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1206 -0.3643 -2.4111 35 1 3.5739 -0.8786 -1.5210 36 1 2.5357 -2.7987 0.5824 37 1 3.3559 -3.9596 2.5930 38 1 3.5434 -3.9225 5.0133 39 1 3.5428 -2.3812 5.9035 40 1 4.1179 -4.0585 7.0204 41 1 9.0407 -4.1829 7.2461 42 1 7.7499 -1.9264 4.7919 43 1 8.4794 -4.6281 4.0186 44 1 3.3448 -0.2681 4.7290 45 1 2.5340 0.8945 2.7156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15163260_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:36:45 Heat of formation + Delta-G solvation = -56.146948 kcal Electronic energy + Delta-G solvation = -27444.279887 eV Core-core repulsion = 23429.877093 eV Total energy + Delta-G solvation = -4014.402794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 428.012 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79206 -40.14815 -38.88395 -37.98867 -37.22424 -33.99463 -33.06290 -31.86629 -31.37836 -30.84230 -29.43049 -28.28858 -28.26489 -27.46589 -26.59303 -24.02377 -23.47600 -22.86679 -21.94158 -19.54348 -18.56442 -17.86842 -17.50756 -17.27347 -16.94724 -16.33804 -16.13212 -15.83444 -15.49407 -15.46216 -14.94708 -14.75879 -14.64505 -14.31783 -14.15121 -14.05561 -13.93484 -13.80005 -13.72609 -13.49668 -13.13691 -13.11413 -13.00935 -12.96140 -12.91060 -12.61969 -12.46615 -12.41260 -12.22171 -12.00346 -11.91353 -11.80522 -11.52825 -11.30389 -10.91871 -10.76654 -10.75239 -10.46278 -10.20168 -9.78804 -9.68128 -9.39728 -0.43878 -0.17389 0.15612 0.23356 0.54046 0.93089 1.08611 1.38918 1.48976 1.84200 1.87714 1.92796 2.02963 2.06544 2.22656 2.67471 3.01210 3.28610 3.36678 3.62030 3.66160 3.70561 3.79461 4.00873 4.09072 4.16290 4.23357 4.26802 4.36041 4.49459 4.55009 4.60158 4.72442 4.82433 4.85238 4.85382 4.89246 4.89859 4.90362 4.91304 5.01656 5.10323 5.17372 5.41120 5.57620 5.59819 5.61008 5.68476 5.71502 6.07066 6.13866 6.68492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.126 2.874 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.105 4.105 7 C -0.119 4.119 8 C -0.102 4.102 9 C 0.093 3.907 10 O -0.298 6.298 11 C 0.166 3.834 12 C -0.171 4.171 13 C -0.049 4.049 14 Br -0.020 7.020 15 C -0.058 4.058 16 Cl -0.047 7.047 17 C -0.073 4.073 18 C -0.129 4.129 19 C -0.068 4.068 20 O -0.545 6.545 21 Si 0.968 3.032 22 H -0.237 1.237 23 H -0.266 1.266 24 H -0.251 1.251 25 C -0.120 4.120 26 C -0.104 4.104 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.138 0.862 37 H 0.126 0.874 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.118 0.882 43 H 0.388 0.612 44 H 0.130 0.870 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 1.494 -2.325 3.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.313 2.687 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.122 4.122 7 C -0.137 4.137 8 C -0.102 4.102 9 C 0.019 3.981 10 O -0.211 6.211 11 C 0.118 3.882 12 C -0.192 4.192 13 C -0.130 4.130 14 Br 0.066 6.934 15 C -0.087 4.087 16 Cl -0.017 7.017 17 C -0.092 4.092 18 C -0.131 4.131 19 C -0.178 4.178 20 O -0.351 6.351 21 Si 0.790 3.210 22 H -0.160 1.160 23 H -0.191 1.191 24 H -0.175 1.175 25 C -0.138 4.138 26 C -0.122 4.122 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.182 0.818 41 H 0.178 0.822 42 H 0.136 0.864 43 H 0.237 0.763 44 H 0.148 0.852 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.264 1.800 -1.765 2.820 hybrid contribution -0.110 -0.703 0.422 0.827 sum -1.374 1.098 -1.343 2.213 Atomic orbital electron populations 1.26270 1.21431 1.04487 1.04606 0.77187 0.65270 0.64619 0.61649 1.26281 1.06363 1.19409 1.04892 1.26294 1.06350 1.08510 1.15887 1.28021 1.02360 0.99582 1.11181 1.21375 0.97449 0.95229 0.98185 1.21363 0.98941 1.00448 0.92956 1.19542 1.01473 0.94494 0.94712 1.21895 0.77511 1.01488 0.97243 1.86289 1.22058 1.71805 1.40911 1.18778 0.91516 0.91330 0.86572 1.21348 1.01828 1.02280 0.93744 1.21681 0.92462 1.02277 0.96598 1.96840 1.69277 1.80385 1.46889 1.20630 0.91186 1.03453 0.93460 1.98408 1.79948 1.79287 1.44103 1.20988 1.01128 0.95722 0.91401 1.19855 0.91779 1.03222 0.98260 1.24922 1.09267 0.96996 0.86654 1.86564 1.87178 1.28788 1.32602 0.85453 0.74003 0.81911 0.79593 1.16022 1.19099 1.17494 1.21381 0.99052 0.93699 0.99652 1.21389 0.97436 1.00735 0.92653 0.91323 0.90678 0.91375 0.91400 0.90661 0.90849 0.90937 0.90657 0.91441 0.84470 0.85576 0.89676 0.89414 0.81841 0.82203 0.86429 0.76344 0.85231 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.81 8.65 113.37 0.98 2.79 16 2 Si 1.13 -6.45 12.32 68.60 0.85 -5.61 16 3 C -0.46 1.97 8.53 113.37 0.97 2.94 16 4 C -0.46 1.84 8.53 113.37 0.97 2.80 16 5 C -0.37 0.29 4.59 22.27 0.10 0.40 16 6 C -0.10 -0.06 9.29 22.27 0.21 0.15 16 7 C -0.12 -0.25 9.70 22.27 0.22 -0.03 16 8 C -0.10 -0.20 5.51 -19.87 -0.11 -0.31 16 9 C 0.09 -0.06 4.87 71.23 0.35 0.28 16 10 O -0.30 -0.93 9.45 -92.67 -0.88 -1.81 16 11 C 0.17 0.34 6.66 22.50 0.15 0.49 16 12 C -0.17 -0.12 8.78 22.38 0.20 0.07 16 13 C -0.05 -0.13 6.22 22.32 0.14 0.01 16 14 Br -0.02 -0.05 32.52 -20.37 -0.66 -0.72 16 15 C -0.06 -0.17 6.32 22.34 0.14 -0.03 16 16 Cl -0.05 -0.16 27.73 -2.72 -0.08 -0.23 16 17 C -0.07 -0.05 8.44 22.27 0.19 0.14 16 18 C -0.13 -0.14 5.27 -19.77 -0.10 -0.25 16 19 C -0.07 0.00 2.38 71.23 0.17 0.16 16 20 O -0.54 -0.80 12.88 -148.98 -1.92 -2.72 16 21 Si 0.97 -1.54 25.49 68.60 1.75 0.21 16 22 H -0.24 0.79 6.73 99.48 0.67 1.46 16 23 H -0.27 -0.47 7.11 99.48 0.71 0.23 16 24 H -0.25 0.12 7.11 99.48 0.71 0.83 16 25 C -0.12 -0.16 9.70 22.27 0.22 0.05 16 26 C -0.10 -0.01 9.29 22.27 0.21 0.20 16 27 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 28 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 29 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.07 -0.22 7.96 -2.38 -0.02 -0.23 16 31 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.07 -0.35 7.69 -2.39 -0.02 -0.37 16 33 H 0.07 -0.32 7.69 -2.39 -0.02 -0.33 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 36 H 0.14 -0.45 7.43 -2.91 -0.02 -0.48 16 37 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 38 H 0.09 -0.27 7.60 -2.39 -0.02 -0.29 16 39 H 0.09 -0.33 7.61 -2.39 -0.02 -0.35 16 40 H 0.16 -0.48 6.30 -2.91 -0.02 -0.50 16 41 H 0.16 -0.39 4.89 -2.91 -0.01 -0.40 16 42 H 0.12 0.08 7.83 -2.38 -0.02 0.07 16 43 H 0.39 -2.21 8.70 -74.05 -0.64 -2.85 16 44 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 45 H 0.14 -0.57 7.43 -2.91 -0.02 -0.59 16 Total: 0.00 -11.99 409.09 5.13 -6.85 By element: Atomic # 1 Polarization: -6.93 SS G_CDS: 1.09 Total: -5.84 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.98 Total: 9.86 kcal Atomic # 8 Polarization: -1.73 SS G_CDS: -2.79 Total: -4.53 kcal Atomic # 14 Polarization: -7.99 SS G_CDS: 2.59 Total: -5.40 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.23 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.66 Total: -0.72 kcal Total: -11.99 5.13 -6.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.293 kcal (2) G-P(sol) polarization free energy of solvation -11.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds