Wall clock time and date at job start Mon Mar 8 2021 15:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47385 * 2 1 4 4 C 1.52997 * 109.46968 * 240.00273 * 2 1 3 5 5 O 1.45201 * 109.47220 * 120.00448 * 2 1 3 6 6 C 1.34631 * 117.00188 * 59.99715 * 5 2 1 7 7 O 1.21520 * 120.00002 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00267 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00033 * 180.02562 * 8 6 5 10 10 H 1.08992 * 112.90684 * 336.24748 * 9 8 6 11 11 C 1.54049 * 113.61276 * 107.61836 * 9 8 6 12 12 C 1.53781 * 87.08031 * 89.07129 * 11 9 8 13 13 H 1.09003 * 113.69043 * 270.86777 * 12 11 9 14 14 C 1.52991 * 113.61611 * 139.97702 * 12 11 9 15 15 O 1.42901 * 109.47409 * 87.50203 * 14 12 11 16 16 C 1.35909 * 117.00220 * 179.97438 * 15 14 12 17 17 C 1.38721 * 120.04495 * 179.72445 * 16 15 14 18 18 C 1.50695 * 120.01395 * 359.97438 * 17 16 15 19 19 O 1.42901 * 109.47173 * 285.00012 * 18 17 16 20 20 Si 1.86298 * 109.47423 * 164.99668 * 18 17 16 21 21 C 1.38166 * 119.96653 * 179.74274 * 17 16 15 22 22 C 1.38268 * 120.06221 * 0.53672 * 21 17 16 23 23 I 2.09511 * 119.95663 * 179.70005 * 22 21 17 24 24 C 1.38428 * 120.09186 * 359.71766 * 22 21 17 25 25 Br 1.89102 * 119.98865 * 180.02562 * 24 22 21 26 26 C 1.38211 * 120.02708 * 0.02562 * 24 22 21 27 27 C 1.53781 * 87.08070 * 25.42738 * 12 11 9 28 28 H 1.09005 * 109.46565 * 300.00198 * 1 2 3 29 29 H 1.08996 * 109.47177 * 59.99028 * 1 2 3 30 30 H 1.09000 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47374 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47536 * 300.00135 * 3 2 1 33 33 H 1.09004 * 109.46915 * 60.00231 * 3 2 1 34 34 H 1.09001 * 109.47283 * 300.00289 * 4 2 1 35 35 H 1.09005 * 109.47057 * 59.99675 * 4 2 1 36 36 H 1.08995 * 109.47902 * 179.97438 * 4 2 1 37 37 H 0.97002 * 120.00078 * 359.97438 * 8 6 5 38 38 H 1.09005 * 113.62125 * 334.52173 * 11 9 8 39 39 H 1.08996 * 113.68970 * 203.62749 * 11 9 8 40 40 H 1.08997 * 109.47550 * 207.50008 * 14 12 11 41 41 H 1.09002 * 109.47334 * 327.50277 * 14 12 11 42 42 H 1.09001 * 109.47448 * 44.99511 * 18 17 16 43 43 H 0.96703 * 113.99608 * 299.99563 * 19 18 17 44 44 H 1.48491 * 110.00157 * 179.97438 * 20 18 17 45 45 H 1.48496 * 109.99857 * 301.32190 * 20 18 17 46 46 H 1.08007 * 119.96629 * 180.23056 * 21 17 16 47 47 H 1.08001 * 120.02852 * 179.97438 * 26 24 22 48 48 H 1.09002 * 113.61445 * 89.11830 * 27 12 11 49 49 H 1.09002 * 113.61408 * 219.93560 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9508 -2.5095 0.5039 8 7 2.0672 -2.6655 2.4170 9 6 1.6740 -4.0670 2.5828 10 1 0.7607 -4.3181 2.0436 11 6 2.8255 -5.0630 2.3476 12 6 3.1498 -4.9202 3.8441 13 1 3.8453 -4.1108 4.0662 14 6 3.5390 -6.2388 4.5153 15 8 4.9450 -6.4497 4.3716 16 6 5.4576 -7.5843 4.9166 17 6 6.8139 -7.8551 4.8092 18 6 7.7201 -6.8914 4.0874 19 8 7.5190 -7.0133 2.6778 20 14 9.4949 -7.2820 4.4975 21 6 7.3342 -9.0064 5.3685 22 6 6.5025 -9.8943 6.0255 23 53 7.2935 -11.6437 6.8642 24 6 5.1479 -9.6292 6.1296 25 35 4.0132 -10.8453 7.0294 26 6 4.6243 -8.4761 5.5761 27 6 1.6742 -4.5377 4.0469 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7209 -1.2496 37 1 2.6269 -2.2367 3.0832 38 1 3.6079 -4.6793 1.6927 39 1 2.4904 -6.0614 2.0669 40 1 3.2845 -6.1964 5.5743 41 1 2.9984 -7.0598 4.0443 42 1 7.4906 -5.8729 4.4003 43 1 7.7051 -7.8957 2.3289 44 1 10.3988 -6.3390 3.7913 45 1 9.7094 -7.1899 5.9640 46 1 8.3908 -9.2154 5.2880 47 1 3.5673 -8.2694 5.6570 48 1 1.0230 -5.3922 4.2310 49 1 1.5270 -3.7309 4.7650 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15786356_15734082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:05:53 Heat of formation + Delta-G solvation = -72.760515 kcal Electronic energy + Delta-G solvation = -33247.519230 eV Core-core repulsion = 28469.598996 eV Total energy + Delta-G solvation = -4777.920235 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 539.989 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03346 -41.73782 -40.47677 -38.93310 -37.85592 -37.77545 -35.40687 -34.25825 -33.87844 -32.86600 -31.20597 -29.85856 -28.42819 -28.40176 -28.33369 -26.76144 -26.50049 -25.06162 -23.74871 -22.78669 -22.35613 -21.20577 -20.33112 -19.44132 -19.27467 -18.24986 -17.65078 -17.36151 -17.29365 -17.12735 -16.74603 -16.43369 -16.04523 -15.98276 -15.62485 -15.46123 -15.33616 -15.17737 -15.04471 -14.57511 -14.50087 -14.24663 -14.01104 -13.74456 -13.43014 -13.38192 -13.17404 -13.12314 -12.95582 -12.90509 -12.65416 -12.61982 -12.42946 -12.35725 -12.31878 -12.05056 -11.86487 -11.84961 -11.79477 -11.68878 -11.43438 -11.31730 -11.16120 -11.04446 -10.57603 -10.47536 -10.22494 -10.13565 -9.42438 -5.08899 -0.38630 -0.14039 -0.12394 0.40201 1.09308 1.20890 1.57635 1.67976 1.90941 1.94198 2.11062 3.06912 3.34294 3.37805 3.39789 3.45263 3.63572 3.70580 3.72609 3.74579 3.75768 3.77735 3.90889 4.06231 4.15704 4.21112 4.31151 4.34558 4.39078 4.44395 4.55724 4.57731 4.58232 4.65641 4.70656 4.72796 4.73092 4.79687 4.81384 4.84219 4.86258 4.95581 5.01187 5.04226 5.13209 5.18841 5.23763 5.28462 5.44236 5.57585 6.13339 6.32866 6.74545 7.28512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.684 5.684 9 C 0.129 3.871 10 H 0.097 0.903 11 C -0.144 4.144 12 C -0.103 4.103 13 H 0.100 0.900 14 C 0.056 3.944 15 O -0.305 6.305 16 C 0.176 3.824 17 C -0.142 4.142 18 C -0.055 4.055 19 O -0.547 6.547 20 Si 0.754 3.246 21 C -0.036 4.036 22 C -0.129 4.129 23 I -0.011 7.011 24 C -0.027 4.027 25 Br -0.021 7.021 26 C -0.179 4.179 27 C -0.117 4.117 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.416 0.584 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.393 0.607 44 H -0.290 1.290 45 H -0.278 1.278 46 H 0.163 0.837 47 H 0.164 0.836 48 H 0.121 0.879 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 0.361 1.222 1.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.399 3.601 7 O -0.483 6.483 8 N -0.344 5.344 9 C 0.025 3.975 10 H 0.115 0.885 11 C -0.183 4.183 12 C -0.121 4.121 13 H 0.118 0.882 14 C -0.018 4.018 15 O -0.217 6.217 16 C 0.128 3.872 17 C -0.145 4.145 18 C -0.166 4.166 19 O -0.354 6.354 20 Si 0.659 3.341 21 C -0.056 4.056 22 C -0.271 4.271 23 I 0.138 6.862 24 C -0.110 4.110 25 Br 0.066 6.934 26 C -0.201 4.201 27 C -0.155 4.155 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.253 0.747 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.243 0.757 44 H -0.217 1.217 45 H -0.205 1.205 46 H 0.180 0.820 47 H 0.181 0.819 48 H 0.139 0.861 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.344 -0.424 1.988 2.061 hybrid contribution -0.660 1.682 -0.298 1.831 sum -0.317 1.258 1.690 2.130 Atomic orbital electron populations 1.22471 0.93869 1.03741 1.03579 1.22366 0.94582 0.92551 0.81427 1.21894 1.02396 0.90879 1.04313 1.22474 1.01546 1.02275 0.97446 1.86309 1.71541 1.23281 1.47341 1.18319 0.78576 0.80728 0.82444 1.90908 1.42232 1.71039 1.44105 1.44382 1.54951 1.11922 1.23109 1.21910 0.98549 0.78036 0.99027 0.88485 1.23593 0.98008 1.00294 0.96412 1.22575 0.97611 0.96476 0.95426 0.88205 1.23221 0.77892 0.98602 1.02065 1.86207 1.26581 1.36747 1.72169 1.18833 0.92063 0.85801 0.90541 1.19932 0.92700 0.97926 1.03952 1.24950 1.07882 0.99978 0.83749 1.86537 1.91990 1.37931 1.18958 0.94207 0.72917 0.88352 0.78638 1.20884 0.99846 0.91094 0.93782 1.24376 0.94093 1.01036 1.07582 1.96969 1.83200 1.24115 1.81883 1.21704 0.93000 0.96063 1.00227 1.96860 1.63461 1.57790 1.75303 1.21384 1.01815 0.94165 1.02772 1.23326 0.94728 1.02936 0.94516 0.91862 0.89419 0.91734 0.91306 0.88244 0.91104 0.91790 0.89375 0.92119 0.74731 0.92427 0.87892 0.89860 0.90035 0.87575 0.75720 1.21676 1.20452 0.82007 0.81889 0.86065 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.59 8.37 71.98 0.60 0.01 16 2 C 0.13 0.42 1.13 -10.80 -0.01 0.41 16 3 C -0.14 0.23 8.85 71.98 0.64 0.87 16 4 C -0.18 -0.70 8.37 71.98 0.60 -0.10 16 5 O -0.37 -2.19 9.94 -55.40 -0.55 -2.74 16 6 C 0.65 4.48 8.06 129.79 1.05 5.52 16 7 O -0.59 -7.22 11.48 19.78 0.23 -6.99 16 8 N -0.68 -0.22 5.27 -567.17 -2.99 -3.21 16 9 C 0.13 -0.29 4.34 45.61 0.20 -0.09 16 10 H 0.10 0.11 7.46 -2.39 -0.02 0.09 16 11 C -0.14 0.37 7.44 31.21 0.23 0.60 16 12 C -0.10 0.62 3.89 -10.27 -0.04 0.58 16 13 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 14 C 0.06 -0.33 4.58 71.98 0.33 0.00 16 15 O -0.30 0.00 9.47 -92.53 -0.88 -0.87 16 16 C 0.18 0.00 6.66 22.50 0.15 0.15 16 17 C -0.14 0.09 5.27 -19.77 -0.10 -0.02 16 18 C -0.06 0.03 2.38 71.23 0.17 0.20 16 19 O -0.55 -0.15 12.88 -148.98 -1.92 -2.07 16 20 Si 0.75 -1.69 29.92 68.60 2.05 0.36 16 21 C -0.04 0.06 8.36 22.26 0.19 0.25 16 22 C -0.13 -0.05 6.20 22.32 0.14 0.09 16 23 I -0.01 -0.01 38.57 -18.82 -0.73 -0.73 16 24 C -0.03 -0.01 6.22 22.31 0.14 0.12 16 25 Br -0.02 -0.02 31.96 -20.37 -0.65 -0.67 16 26 C -0.18 0.25 8.78 22.38 0.20 0.45 16 27 C -0.12 0.99 7.38 31.12 0.23 1.22 16 28 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 29 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 31 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H 0.06 0.59 5.88 -2.39 -0.01 0.57 16 35 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 36 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.42 -1.58 8.81 -92.71 -0.82 -2.40 16 38 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 39 H 0.10 -0.41 7.89 -2.39 -0.02 -0.43 16 40 H 0.08 -0.71 7.66 -2.39 -0.02 -0.73 16 41 H 0.08 -0.64 7.36 -2.39 -0.02 -0.66 16 42 H 0.11 0.18 7.83 -2.39 -0.02 0.16 16 43 H 0.39 -3.11 8.70 -74.06 -0.64 -3.75 16 44 H -0.29 -1.42 7.11 99.48 0.71 -0.71 16 45 H -0.28 -0.65 7.11 99.48 0.71 0.05 16 46 H 0.16 -0.93 5.12 -2.91 -0.01 -0.95 16 47 H 0.16 -0.87 6.30 -2.91 -0.02 -0.89 16 48 H 0.12 -1.39 8.10 -2.39 -0.02 -1.41 16 49 H 0.09 -0.90 8.14 -2.39 -0.02 -0.91 16 Total: 0.00 -17.87 438.39 -1.14 -19.01 By element: Atomic # 1 Polarization: -11.94 SS G_CDS: -0.41 Total: -12.35 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.70 Total: 10.27 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -2.99 Total: -3.21 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -3.12 Total: -12.67 kcal Atomic # 14 Polarization: -1.69 SS G_CDS: 2.05 Total: 0.36 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.65 Total: -0.67 kcal Atomic # 53 Polarization: -0.01 SS G_CDS: -0.73 Total: -0.73 kcal Total: -17.87 -1.14 -19.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15786356_15734082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.749 kcal (2) G-P(sol) polarization free energy of solvation -17.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds