Wall clock time and date at job start Mon Mar 8 2021 16:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35980 * 116.99994 * 2 1 4 4 C 1.38678 * 119.99753 * 180.25107 * 3 2 1 5 5 C 1.50698 * 120.00355 * 359.97438 * 4 3 2 6 6 C 1.38153 * 119.99937 * 180.23788 * 4 3 2 7 7 C 1.38686 * 119.99920 * 359.76967 * 6 4 3 8 8 O 1.35979 * 119.99795 * 179.97438 * 7 6 4 9 9 C 1.42893 * 117.00341 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47307 * 179.97438 * 9 8 7 11 11 H 1.08996 * 112.84941 * 316.20074 * 10 9 8 12 12 C 1.53787 * 113.61142 * 87.50423 * 10 9 8 13 13 C 1.53782 * 87.07851 * 139.98246 * 12 10 9 14 14 H 1.09001 * 113.69445 * 89.13133 * 13 12 10 15 15 N 1.46506 * 113.61195 * 220.01835 * 13 12 10 16 16 C 1.34779 * 119.99933 * 252.49885 * 15 13 12 17 17 O 1.21508 * 119.99571 * 359.97438 * 16 15 13 18 18 O 1.34637 * 120.00045 * 180.02562 * 16 15 13 19 19 C 1.45199 * 117.00277 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.46739 * 59.99879 * 19 18 16 21 21 C 1.52994 * 109.47105 * 180.02562 * 19 18 16 22 22 C 1.53000 * 109.46890 * 300.00428 * 19 18 16 23 23 C 1.53783 * 87.08410 * 334.56666 * 13 12 10 24 24 C 1.38715 * 119.99919 * 0.02562 * 7 6 4 25 25 C 1.50698 * 120.00180 * 179.97438 * 24 7 6 26 26 O 1.42901 * 109.47325 * 284.97898 * 25 24 7 27 27 Si 1.86298 * 109.47215 * 164.97787 * 25 24 7 28 28 C 1.38118 * 120.00065 * 359.97438 * 24 7 6 29 29 H 1.09003 * 109.46677 * 299.99594 * 1 2 3 30 30 H 1.09000 * 109.47111 * 59.98887 * 1 2 3 31 31 H 1.08994 * 109.47628 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46993 * 270.25328 * 5 4 3 33 33 H 1.09005 * 109.46925 * 30.24664 * 5 4 3 34 34 H 1.08997 * 109.47401 * 150.25260 * 5 4 3 35 35 H 1.08002 * 120.00340 * 179.79438 * 6 4 3 36 36 H 1.08997 * 109.47621 * 300.00251 * 9 8 7 37 37 H 1.09006 * 109.46846 * 60.00568 * 9 8 7 38 38 H 1.08993 * 113.61144 * 254.53112 * 12 10 9 39 39 H 1.09002 * 113.61160 * 25.43433 * 12 10 9 40 40 H 0.96999 * 119.99866 * 72.49589 * 15 13 12 41 41 H 1.09003 * 109.47523 * 60.00301 * 20 19 18 42 42 H 1.09002 * 109.47221 * 179.97438 * 20 19 18 43 43 H 1.08999 * 109.47965 * 299.99848 * 20 19 18 44 44 H 1.09000 * 109.47303 * 60.00610 * 21 19 18 45 45 H 1.09001 * 109.47017 * 179.97438 * 21 19 18 46 46 H 1.08993 * 109.47294 * 300.00113 * 21 19 18 47 47 H 1.08996 * 109.47656 * 59.99504 * 22 19 18 48 48 H 1.09001 * 109.47173 * 180.02562 * 22 19 18 49 49 H 1.09004 * 109.46890 * 299.99492 * 22 19 18 50 50 H 1.08996 * 113.61247 * 270.88833 * 23 13 12 51 51 H 1.08996 * 113.68598 * 139.99092 * 23 13 12 52 52 H 1.09004 * 109.46707 * 44.97985 * 25 24 7 53 53 H 0.96704 * 113.99799 * 59.99803 * 26 25 24 54 54 H 1.48505 * 109.99816 * 178.68206 * 27 25 24 55 55 H 1.48496 * 110.00185 * 299.99832 * 27 25 24 56 56 H 1.08002 * 119.99729 * 179.97438 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4312 1.2841 -0.0053 5 6 4.2520 0.0203 -0.0104 6 6 4.0585 2.5150 -0.0003 7 6 3.3032 3.6782 0.0051 8 8 3.9206 4.8897 0.0105 9 6 5.3495 4.8897 0.0097 10 6 5.8596 6.3321 0.0157 11 1 5.3168 6.9759 -0.6765 12 6 6.0079 6.9273 1.4259 13 6 7.3089 7.5791 0.9286 14 1 7.1639 8.5650 0.4870 15 7 8.3932 7.5509 1.9135 16 6 8.7638 8.6850 2.5404 17 8 8.1989 9.7309 2.2883 18 8 9.7605 8.6592 3.4451 19 6 10.1068 9.9180 4.0806 20 6 8.8882 10.4646 4.8269 21 6 11.2521 9.6920 5.0695 22 6 10.5452 10.9239 3.0143 23 6 7.3883 6.4455 -0.1075 24 6 1.9179 3.6056 0.0061 25 6 1.0972 4.8694 0.0126 26 8 1.1310 5.4527 1.3167 27 14 -0.6642 4.4684 -0.4428 28 6 1.2909 2.3750 0.0011 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.4501 -0.2885 1.0160 33 1 3.7033 -0.7672 -0.5272 34 1 5.1962 0.2023 -0.5237 35 1 5.1370 2.5716 -0.0010 36 1 5.7134 4.3716 0.8970 37 1 5.7123 4.3801 -0.8830 38 1 5.2291 7.6460 1.6806 39 1 6.1639 6.1778 2.2019 40 1 8.8442 6.7160 2.1145 41 1 8.5757 9.7480 5.5865 42 1 9.1482 11.4094 5.3044 43 1 8.0725 10.6258 4.1221 44 1 12.1201 9.3028 4.5374 45 1 11.5123 10.6370 5.5462 46 1 10.9401 8.9753 5.8291 47 1 9.7297 11.0849 2.3094 48 1 10.8056 11.8687 3.4914 49 1 11.4134 10.5344 2.4826 50 1 7.9216 5.5645 0.2493 51 1 7.7239 6.7741 -1.0911 52 1 1.5083 5.5733 -0.7111 53 1 2.0188 5.6875 1.6196 54 1 -1.4909 5.7016 -0.4091 55 1 -0.7130 3.8612 -1.7971 56 1 0.2123 2.3185 0.0023 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16525064_15734236.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:56:21 Heat of formation + Delta-G solvation = -139.902135 kcal Electronic energy + Delta-G solvation = -35627.756870 eV Core-core repulsion = 30891.300776 eV Total energy + Delta-G solvation = -4736.456095 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.212 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.97032 -41.75878 -40.60226 -39.75420 -38.21695 -37.78941 -37.15860 -35.43225 -34.31044 -33.99941 -30.68839 -29.56471 -29.03995 -28.39996 -28.32819 -28.12315 -26.76187 -25.34058 -24.80457 -23.35843 -22.34426 -22.12372 -21.41682 -20.51479 -19.18415 -19.04584 -18.62703 -18.22903 -17.88049 -17.53568 -17.22615 -17.02012 -16.75443 -16.55354 -16.15930 -15.93959 -15.75026 -15.51866 -15.38688 -15.34291 -14.80092 -14.52382 -14.47544 -14.25735 -14.13386 -14.01811 -13.82959 -13.49863 -13.39534 -13.34187 -13.20867 -12.97419 -12.94107 -12.89452 -12.72096 -12.69967 -12.56804 -12.51658 -12.37611 -12.32153 -12.14408 -12.10325 -11.75856 -11.54484 -11.42448 -11.27867 -11.16467 -11.12936 -11.10233 -10.18152 -9.91718 -8.71537 -5.00745 0.05945 0.36684 1.14273 1.32330 1.53392 1.70420 1.88658 2.10956 2.41692 2.53043 3.12756 3.37220 3.47186 3.47521 3.64643 3.71430 3.72717 3.77240 3.78503 3.83310 3.91660 3.93300 4.01353 4.19817 4.20921 4.27019 4.35896 4.43904 4.46419 4.48869 4.50390 4.55868 4.58179 4.61134 4.68528 4.73491 4.75177 4.76598 4.77463 4.80918 4.82389 4.83367 4.84939 4.90638 4.93897 5.01390 5.05622 5.08356 5.17228 5.23974 5.24506 5.29415 5.37430 5.46737 5.56297 5.57350 6.27382 6.37654 6.46757 6.55065 7.31554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.327 6.327 3 C 0.085 3.915 4 C -0.084 4.084 5 C -0.106 4.106 6 C -0.169 4.169 7 C 0.101 3.899 8 O -0.325 6.325 9 C 0.068 3.932 10 C -0.100 4.100 11 H 0.100 0.900 12 C -0.144 4.144 13 C 0.133 3.867 14 H 0.102 0.898 15 N -0.689 5.689 16 C 0.642 3.358 17 O -0.596 6.596 18 O -0.369 6.369 19 C 0.127 3.873 20 C -0.180 4.180 21 C -0.138 4.138 22 C -0.180 4.180 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.078 4.078 26 O -0.546 6.546 27 Si 0.802 3.198 28 C -0.162 4.162 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.418 0.582 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.113 0.887 51 H 0.091 0.909 52 H 0.068 0.932 53 H 0.373 0.627 54 H -0.293 1.293 55 H -0.263 1.263 56 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 -5.210 0.638 6.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.241 6.241 3 C 0.040 3.960 4 C -0.085 4.085 5 C -0.162 4.162 6 C -0.188 4.188 7 C 0.056 3.944 8 O -0.239 6.239 9 C -0.007 4.007 10 C -0.119 4.119 11 H 0.118 0.882 12 C -0.183 4.183 13 C 0.030 3.970 14 H 0.120 0.880 15 N -0.348 5.348 16 C 0.396 3.604 17 O -0.487 6.487 18 O -0.284 6.284 19 C 0.091 3.909 20 C -0.237 4.237 21 C -0.195 4.195 22 C -0.237 4.237 23 C -0.156 4.156 24 C -0.130 4.130 25 C -0.185 4.185 26 O -0.352 6.352 27 Si 0.703 3.297 28 C -0.180 4.180 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.175 0.825 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.256 0.744 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.116 0.884 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.105 0.895 49 H 0.081 0.919 50 H 0.132 0.868 51 H 0.110 0.890 52 H 0.085 0.915 53 H 0.222 0.778 54 H -0.220 1.220 55 H -0.188 1.188 56 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.756 -4.594 -0.018 4.918 hybrid contribution 1.420 0.840 -0.307 1.678 sum 3.177 -3.754 -0.325 4.929 Atomic orbital electron populations 1.23433 0.76713 1.05842 1.02515 1.86065 1.23089 1.25981 1.89007 1.18820 0.92126 0.84581 1.00487 1.19413 0.90896 0.96573 1.01641 1.20679 0.99065 0.93382 1.03111 1.21198 1.01098 0.90231 1.06228 1.18722 0.91317 0.84936 0.99414 1.86022 1.22660 1.26294 1.88961 1.22988 0.77178 0.97709 1.02788 1.22248 0.96524 0.94991 0.98159 0.88205 1.23598 0.97060 1.00390 0.97229 1.22553 0.85288 1.00372 0.88811 0.88029 1.44755 1.38559 1.08856 1.42610 1.18457 0.78820 0.84672 0.78471 1.90906 1.58432 1.31216 1.68142 1.86311 1.50266 1.39228 1.52586 1.22344 0.96056 0.79988 0.92518 1.22471 0.98144 1.02440 1.00678 1.21888 0.95711 1.04264 0.97588 1.22474 1.02093 0.99698 0.99454 1.23342 0.94207 0.98385 0.99702 1.19480 0.91575 0.95670 1.06246 1.25461 1.12791 0.92276 0.88015 1.86674 1.34308 1.82476 1.31767 0.92415 0.73026 0.83248 0.80984 1.21020 1.00284 0.90774 1.05944 0.91084 0.91881 0.86318 0.90430 0.91353 0.90055 0.82475 0.90316 0.90509 0.91818 0.88515 0.74436 0.91962 0.89499 0.91897 0.91096 0.88356 0.91166 0.91864 0.89507 0.91858 0.86838 0.89014 0.91456 0.77822 1.22023 1.18847 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.33 -0.94 9.54 -93.33 -0.89 -1.83 16 3 C 0.09 0.34 6.66 22.49 0.15 0.49 16 4 C -0.08 -0.21 5.89 -19.78 -0.12 -0.33 16 5 C -0.11 0.12 9.78 71.24 0.70 0.82 16 6 C -0.17 -0.12 8.69 22.36 0.19 0.07 16 7 C 0.10 0.32 6.62 22.49 0.15 0.47 16 8 O -0.32 -0.43 9.03 -93.31 -0.84 -1.28 16 9 C 0.07 -0.34 4.58 71.98 0.33 -0.01 16 10 C -0.10 0.54 4.01 -10.26 -0.04 0.50 16 11 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 12 C -0.14 0.44 7.43 31.12 0.23 0.67 16 13 C 0.13 -0.29 4.24 45.52 0.19 -0.10 16 14 H 0.10 0.23 7.46 -2.39 -0.02 0.21 16 15 N -0.69 0.46 5.36 -567.59 -3.04 -2.58 16 16 C 0.64 4.17 8.06 129.79 1.05 5.22 16 17 O -0.60 -7.36 11.48 19.81 0.23 -7.13 16 18 O -0.37 -1.96 9.94 -55.47 -0.55 -2.51 16 19 C 0.13 0.39 1.13 -10.80 -0.01 0.38 16 20 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 21 C -0.14 0.29 8.85 71.98 0.64 0.93 16 22 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 23 C -0.12 0.94 7.39 31.12 0.23 1.17 16 24 C -0.13 -0.58 5.27 -19.78 -0.10 -0.68 16 25 C -0.08 -0.37 2.33 71.24 0.17 -0.21 16 26 O -0.55 -3.34 12.65 -148.98 -1.89 -5.23 16 27 Si 0.80 1.94 30.17 68.60 2.07 4.01 16 28 C -0.16 -0.48 7.65 22.36 0.17 -0.31 16 29 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 30 H 0.06 -0.35 7.66 -2.39 -0.02 -0.37 16 31 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16 32 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.07 0.03 7.53 -2.38 -0.02 0.01 16 34 H 0.08 -0.36 8.09 -2.39 -0.02 -0.38 16 35 H 0.16 -0.74 6.29 -2.91 -0.02 -0.75 16 36 H 0.08 -0.58 7.36 -2.39 -0.02 -0.60 16 37 H 0.08 -0.53 7.66 -2.38 -0.02 -0.55 16 38 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.10 -0.42 7.90 -2.39 -0.02 -0.44 16 40 H 0.42 -2.45 8.84 -92.71 -0.82 -3.27 16 41 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.09 0.02 8.14 -2.39 -0.02 0.01 16 43 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 44 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 48 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 49 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 50 H 0.11 -1.33 8.08 -2.39 -0.02 -1.35 16 51 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 52 H 0.07 0.38 7.82 -2.39 -0.02 0.37 16 53 H 0.37 0.99 8.60 -74.05 -0.64 0.35 16 54 H -0.29 -2.59 7.11 99.48 0.71 -1.88 16 55 H -0.26 -1.13 7.11 99.48 0.71 -0.43 16 56 H 0.15 -0.24 3.36 -2.91 -0.01 -0.25 16 Total: 0.00 -18.84 441.30 0.81 -18.04 By element: Atomic # 1 Polarization: -11.04 SS G_CDS: -0.52 Total: -11.56 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.24 Total: 10.07 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -3.04 Total: -2.58 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -3.94 Total: -17.98 kcal Atomic # 14 Polarization: 1.94 SS G_CDS: 2.07 Total: 4.01 kcal Total: -18.84 0.81 -18.04 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16525064_15734236.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.865 kcal (2) G-P(sol) polarization free energy of solvation -18.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds