Wall clock time and date at job start Mon Mar 8 2021 13:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35982 * 116.99767 * 2 1 4 4 C 1.38676 * 120.00290 * 359.97438 * 3 2 1 5 5 C 1.38152 * 119.99904 * 179.74460 * 4 3 2 6 6 C 1.50700 * 119.99850 * 180.27701 * 5 4 3 7 7 O 1.42902 * 109.47459 * 105.27932 * 6 5 4 8 8 Si 1.86298 * 109.47159 * 345.27392 * 6 5 4 9 9 H 1.48501 * 109.46885 * 60.00643 * 8 6 5 10 10 H 1.48509 * 109.47129 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47646 * 300.00442 * 8 6 5 12 12 C 1.38676 * 119.99906 * 0.55449 * 5 4 3 13 13 O 1.35979 * 119.99695 * 179.72289 * 12 5 4 14 14 C 1.42905 * 116.99769 * 179.72578 * 13 12 5 15 15 C 1.50701 * 109.47046 * 179.97438 * 14 13 12 16 16 C 1.38234 * 120.00243 * 89.99998 * 15 14 13 17 17 C 1.38234 * 120.00240 * 180.02562 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.26327 * 17 16 15 19 19 Si 1.86796 * 120.00338 * 179.72477 * 18 17 16 20 20 C 1.86298 * 109.47345 * 89.99399 * 19 18 17 21 21 C 1.86292 * 109.47215 * 209.99657 * 19 18 17 22 22 C 1.86304 * 109.46695 * 329.99459 * 19 18 17 23 23 C 1.38238 * 119.99752 * 359.47832 * 18 17 16 24 24 C 1.38234 * 120.00005 * 0.52168 * 23 18 17 25 25 C 1.38713 * 119.99991 * 359.44486 * 12 5 4 26 26 C 1.38106 * 120.00292 * 0.27754 * 25 12 5 27 27 C 1.50698 * 120.00386 * 180.02562 * 26 25 12 28 28 H 1.08996 * 109.47181 * 300.00111 * 1 2 3 29 29 H 1.09002 * 109.47222 * 60.00396 * 1 2 3 30 30 H 1.09000 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99606 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.46663 * 225.28146 * 6 5 4 33 33 H 0.96701 * 113.99342 * 299.99812 * 7 6 5 34 34 H 1.08996 * 109.47095 * 59.99701 * 14 13 12 35 35 H 1.08999 * 109.47350 * 299.99637 * 14 13 12 36 36 H 1.07999 * 119.99751 * 359.97438 * 16 15 14 37 37 H 1.08002 * 119.99744 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.47461 * 60.00145 * 20 19 18 39 39 H 1.08995 * 109.47041 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.46941 * 300.00096 * 20 19 18 41 41 H 1.08997 * 109.47556 * 59.99827 * 21 19 18 42 42 H 1.09003 * 109.47107 * 179.97438 * 21 19 18 43 43 H 1.09001 * 109.47298 * 299.99936 * 21 19 18 44 44 H 1.09004 * 109.47045 * 60.00345 * 22 19 18 45 45 H 1.09003 * 109.47110 * 180.02562 * 22 19 18 46 46 H 1.09000 * 109.47158 * 300.00133 * 22 19 18 47 47 H 1.07999 * 119.99927 * 180.24100 * 23 18 17 48 48 H 1.08001 * 120.00310 * 179.72165 * 24 23 18 49 49 H 1.08007 * 120.00069 * 180.25195 * 25 12 5 50 50 H 1.09004 * 109.47148 * 90.00370 * 27 26 25 51 51 H 1.09003 * 109.47452 * 210.00239 * 27 26 25 52 52 H 1.08994 * 109.47226 * 329.99745 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2911 2.3747 -0.0005 5 6 1.9183 3.6056 0.0048 6 6 1.0975 4.8695 0.0105 7 8 1.1360 5.4566 1.3128 8 14 -0.6655 4.4670 -0.4374 9 1 -1.2220 3.5110 0.5533 10 1 -1.4744 5.7124 -0.4312 11 1 -0.7055 3.8569 -1.7907 12 6 3.3031 3.6782 -0.0009 13 8 3.9204 4.8898 -0.0014 14 6 5.3495 4.8898 -0.0013 15 6 5.8518 6.3106 -0.0025 16 6 6.0822 6.9633 1.1941 17 6 6.5424 8.2667 1.1930 18 6 6.7671 8.9194 -0.0046 19 14 7.3818 10.6834 -0.0062 20 6 9.2447 10.6919 -0.0102 21 6 6.7534 11.5586 -1.5259 22 6 6.7600 11.5588 1.5163 23 6 6.5419 8.2650 -1.2013 24 6 6.0816 6.9615 -1.2002 25 6 4.0586 2.5148 -0.0004 26 6 3.4317 1.2842 0.0001 27 6 4.2524 0.0204 0.0013 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2126 2.3181 -0.0005 32 1 1.5060 5.5712 -0.7167 33 1 0.7870 4.8866 2.0116 34 1 5.7128 4.3756 -0.8911 35 1 5.7128 4.3763 0.8889 36 1 5.9017 6.4551 2.1298 37 1 6.7220 8.7768 2.1279 38 1 9.6085 10.1797 -0.9009 39 1 9.6033 11.7212 -0.0106 40 1 9.6123 10.1798 0.8790 41 1 5.6635 11.5536 -1.5236 42 1 7.1117 12.5881 -1.5266 43 1 7.1172 11.0464 -2.4167 44 1 7.1277 11.0467 2.4055 45 1 7.1182 12.5883 1.5153 46 1 5.6700 11.5538 1.5187 47 1 6.7212 8.7735 -2.1370 48 1 5.9013 6.4516 -2.1351 49 1 5.1372 2.5713 -0.0007 50 1 4.4498 -0.2838 1.0292 51 1 3.7042 -0.7694 -0.5124 52 1 5.1969 0.2000 -0.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_16525064_9276060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:43:30 Heat of formation + Delta-G solvation = -104.544793 kcal Electronic energy + Delta-G solvation = -29717.472177 eV Core-core repulsion = 25770.831060 eV Total energy + Delta-G solvation = -3946.641117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.72266 -40.38657 -39.54633 -38.04597 -37.11137 -34.09346 -32.87315 -31.83193 -30.35579 -29.56505 -29.19318 -28.48314 -28.41905 -28.39634 -27.18005 -25.03793 -23.43038 -23.35849 -22.24496 -21.78095 -19.17203 -18.58653 -18.13157 -17.43412 -17.25634 -17.01747 -16.65931 -16.30017 -15.94399 -15.86351 -15.51808 -15.30637 -14.87667 -14.58530 -14.39477 -14.35579 -14.30648 -14.17792 -14.13051 -13.95408 -13.83301 -13.81965 -13.47091 -13.24176 -13.23372 -13.08332 -13.07054 -12.97628 -12.75129 -12.67665 -12.47601 -12.42134 -12.16599 -11.88983 -11.78438 -11.58184 -11.23579 -11.01835 -10.88289 -10.79357 -10.29714 -9.87699 -9.72502 -9.63559 -8.62211 0.11968 0.22917 0.47672 0.60240 1.15782 1.37213 1.50650 1.73266 1.87203 1.90051 1.92432 2.29468 2.39758 2.56979 2.61058 3.09636 3.50942 3.61779 3.71720 3.83380 3.85108 3.96422 4.05783 4.11206 4.17670 4.18254 4.27383 4.33132 4.45828 4.50943 4.55034 4.56701 4.60705 4.70590 4.72151 4.73923 4.76439 4.77010 4.77924 4.78280 4.80220 4.80637 4.99862 5.05749 5.11234 5.20480 5.26124 5.41377 5.44468 5.49727 5.53033 5.55305 5.59893 5.66535 5.68179 6.16428 6.30753 6.52651 6.66579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.095 3.905 4 C -0.174 4.174 5 C -0.121 4.121 6 C -0.066 4.066 7 O -0.530 6.530 8 Si 0.943 3.057 9 H -0.254 1.254 10 H -0.250 1.250 11 H -0.249 1.249 12 C 0.129 3.871 13 O -0.294 6.294 14 C 0.099 3.901 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.092 4.092 18 C -0.361 4.361 19 Si 1.059 2.941 20 C -0.449 4.449 21 C -0.450 4.450 22 C -0.450 4.450 23 C -0.092 4.092 24 C -0.107 4.107 25 C -0.174 4.174 26 C -0.067 4.067 27 C -0.109 4.109 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.371 0.629 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.137 0.863 50 H 0.073 0.927 51 H 0.074 0.926 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 -0.669 -0.123 0.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.050 3.950 4 C -0.192 4.192 5 C -0.122 4.122 6 C -0.177 4.177 7 O -0.335 6.335 8 Si 0.766 3.234 9 H -0.178 1.178 10 H -0.174 1.174 11 H -0.172 1.172 12 C 0.083 3.917 13 O -0.208 6.208 14 C 0.024 3.976 15 C -0.086 4.086 16 C -0.122 4.122 17 C -0.109 4.109 18 C -0.403 4.403 19 Si 1.251 2.749 20 C -0.556 4.556 21 C -0.557 4.557 22 C -0.558 4.558 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.193 4.193 26 C -0.068 4.068 27 C -0.166 4.166 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.218 0.782 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.155 0.845 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.063 -0.428 -0.685 0.810 hybrid contribution 0.058 -0.665 0.388 0.772 sum 0.121 -1.093 -0.297 1.139 Atomic orbital electron populations 1.23112 0.78422 1.04351 1.01285 1.86085 1.21169 1.26205 1.89113 1.18566 0.91621 0.84146 1.00688 1.20999 0.99912 0.91444 1.06858 1.19339 0.91564 0.95052 1.06282 1.24792 1.08499 0.94928 0.89511 1.86583 1.86957 1.44111 1.15815 0.85842 0.75767 0.80688 0.81122 1.17784 1.17354 1.17198 1.18551 0.91187 0.84349 0.97598 1.86255 1.20209 1.25969 1.88365 1.21632 0.79188 0.94724 1.02029 1.19433 1.00642 0.94512 0.94012 1.21137 0.98544 0.95247 0.97244 1.21069 0.97534 0.94156 0.98188 1.27455 1.03154 1.15500 0.94182 0.78184 0.66823 0.62542 0.67344 1.26121 1.20463 1.04438 1.04602 1.26134 1.06568 1.08021 1.15016 1.26137 1.06548 1.08010 1.15057 1.21061 0.97623 0.94151 0.98188 1.21132 0.98896 0.95291 0.97175 1.21034 1.00181 0.90872 1.07211 1.19092 0.90563 0.95711 1.01444 1.20678 0.98846 0.94291 1.02753 0.92651 0.92750 0.87811 0.84860 0.86421 0.78243 0.91212 0.91162 0.86164 0.85953 0.91180 0.91039 0.91174 0.91017 0.90967 0.91187 0.91172 0.90975 0.91001 0.85971 0.86207 0.84503 0.90861 0.90675 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.31 -0.67 9.54 -19.68 -0.19 -0.85 16 3 C 0.09 0.24 6.66 -39.24 -0.26 -0.02 16 4 C -0.17 -0.33 7.65 -39.45 -0.30 -0.63 16 5 C -0.12 -0.30 5.27 -104.49 -0.55 -0.85 16 6 C -0.07 -0.12 2.37 36.01 0.09 -0.03 16 7 O -0.53 -1.26 12.88 -35.23 -0.45 -1.72 16 8 Si 0.94 0.50 25.48 -169.99 -4.33 -3.83 16 9 H -0.25 0.04 6.74 56.52 0.38 0.42 16 10 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 11 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 12 C 0.13 0.37 6.66 -39.24 -0.26 0.11 16 13 O -0.29 -0.97 9.45 -19.67 -0.19 -1.16 16 14 C 0.10 0.10 4.86 36.01 0.18 0.28 16 15 C -0.09 -0.17 5.51 -104.62 -0.58 -0.74 16 16 C -0.10 -0.19 9.70 -39.58 -0.38 -0.57 16 17 C -0.09 -0.09 9.29 -39.58 -0.37 -0.46 16 18 C -0.36 -0.13 4.59 -39.58 -0.18 -0.31 16 19 Si 1.06 -2.23 12.32 -169.99 -2.09 -4.33 16 20 C -0.45 0.58 8.65 101.05 0.87 1.46 16 21 C -0.45 0.62 8.54 101.05 0.86 1.49 16 22 C -0.45 0.59 8.53 101.05 0.86 1.45 16 23 C -0.09 -0.08 9.29 -39.58 -0.37 -0.45 16 24 C -0.11 -0.17 9.70 -39.58 -0.38 -0.55 16 25 C -0.17 -0.29 8.69 -39.45 -0.34 -0.64 16 26 C -0.07 -0.14 5.89 -104.49 -0.62 -0.75 16 27 C -0.11 -0.04 9.79 36.00 0.35 0.32 16 28 H 0.05 -0.09 7.66 -51.93 -0.40 -0.49 16 29 H 0.05 -0.08 7.66 -51.93 -0.40 -0.48 16 30 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.13 0.05 3.12 -52.49 -0.16 -0.11 16 32 H 0.12 0.24 7.82 -51.93 -0.41 -0.17 16 33 H 0.37 -0.41 8.70 45.56 0.40 -0.01 16 34 H 0.07 -0.02 7.60 -51.93 -0.39 -0.42 16 35 H 0.07 -0.01 7.60 -51.93 -0.39 -0.40 16 36 H 0.12 0.08 8.06 -52.49 -0.42 -0.34 16 37 H 0.12 -0.11 7.43 -52.49 -0.39 -0.50 16 38 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 39 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 40 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 41 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 44 H 0.07 -0.10 7.69 -51.93 -0.40 -0.50 16 45 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 46 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 47 H 0.12 -0.14 7.44 -52.49 -0.39 -0.53 16 48 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 49 H 0.14 -0.04 6.29 -52.48 -0.33 -0.37 16 50 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 51 H 0.07 0.06 7.53 -51.93 -0.39 -0.33 16 52 H 0.07 -0.06 8.08 -51.93 -0.42 -0.48 16 LS Contribution 422.53 15.07 6.37 6.37 Total: 0.00 -6.45 422.53 -9.16 -15.61 By element: Atomic # 1 Polarization: -2.28 SS G_CDS: -7.88 Total: -10.16 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.39 Total: 0.07 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -0.83 Total: -3.73 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: -6.43 Total: -8.15 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -6.45 -9.16 -15.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16525064_9276060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.935 kcal (2) G-P(sol) polarization free energy of solvation -6.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds