Wall clock time and date at job start Mon Mar 8 2021 13:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35982 * 116.99767 * 2 1 4 4 C 1.38676 * 120.00290 * 359.97438 * 3 2 1 5 5 C 1.38152 * 119.99904 * 179.74460 * 4 3 2 6 6 C 1.50700 * 119.99850 * 180.27701 * 5 4 3 7 7 O 1.42902 * 109.47459 * 105.27932 * 6 5 4 8 8 Si 1.86298 * 109.47159 * 345.27392 * 6 5 4 9 9 H 1.48501 * 109.46885 * 60.00643 * 8 6 5 10 10 H 1.48509 * 109.47129 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47646 * 300.00442 * 8 6 5 12 12 C 1.38676 * 119.99906 * 0.55449 * 5 4 3 13 13 O 1.35979 * 119.99695 * 179.72289 * 12 5 4 14 14 C 1.42905 * 116.99769 * 179.72578 * 13 12 5 15 15 C 1.50701 * 109.47046 * 179.97438 * 14 13 12 16 16 C 1.38234 * 120.00243 * 89.99998 * 15 14 13 17 17 C 1.38234 * 120.00240 * 180.02562 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.26327 * 17 16 15 19 19 Si 1.86796 * 120.00338 * 179.72477 * 18 17 16 20 20 C 1.86298 * 109.47345 * 89.99399 * 19 18 17 21 21 C 1.86292 * 109.47215 * 209.99657 * 19 18 17 22 22 C 1.86304 * 109.46695 * 329.99459 * 19 18 17 23 23 C 1.38238 * 119.99752 * 359.47832 * 18 17 16 24 24 C 1.38234 * 120.00005 * 0.52168 * 23 18 17 25 25 C 1.38713 * 119.99991 * 359.44486 * 12 5 4 26 26 C 1.38106 * 120.00292 * 0.27754 * 25 12 5 27 27 C 1.50698 * 120.00386 * 180.02562 * 26 25 12 28 28 H 1.08996 * 109.47181 * 300.00111 * 1 2 3 29 29 H 1.09002 * 109.47222 * 60.00396 * 1 2 3 30 30 H 1.09000 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99606 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.46663 * 225.28146 * 6 5 4 33 33 H 0.96701 * 113.99342 * 299.99812 * 7 6 5 34 34 H 1.08996 * 109.47095 * 59.99701 * 14 13 12 35 35 H 1.08999 * 109.47350 * 299.99637 * 14 13 12 36 36 H 1.07999 * 119.99751 * 359.97438 * 16 15 14 37 37 H 1.08002 * 119.99744 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.47461 * 60.00145 * 20 19 18 39 39 H 1.08995 * 109.47041 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.46941 * 300.00096 * 20 19 18 41 41 H 1.08997 * 109.47556 * 59.99827 * 21 19 18 42 42 H 1.09003 * 109.47107 * 179.97438 * 21 19 18 43 43 H 1.09001 * 109.47298 * 299.99936 * 21 19 18 44 44 H 1.09004 * 109.47045 * 60.00345 * 22 19 18 45 45 H 1.09003 * 109.47110 * 180.02562 * 22 19 18 46 46 H 1.09000 * 109.47158 * 300.00133 * 22 19 18 47 47 H 1.07999 * 119.99927 * 180.24100 * 23 18 17 48 48 H 1.08001 * 120.00310 * 179.72165 * 24 23 18 49 49 H 1.08007 * 120.00069 * 180.25195 * 25 12 5 50 50 H 1.09004 * 109.47148 * 90.00370 * 27 26 25 51 51 H 1.09003 * 109.47452 * 210.00239 * 27 26 25 52 52 H 1.08994 * 109.47226 * 329.99745 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2911 2.3747 -0.0005 5 6 1.9183 3.6056 0.0048 6 6 1.0975 4.8695 0.0105 7 8 1.1360 5.4566 1.3128 8 14 -0.6655 4.4670 -0.4374 9 1 -1.2220 3.5110 0.5533 10 1 -1.4744 5.7124 -0.4312 11 1 -0.7055 3.8569 -1.7907 12 6 3.3031 3.6782 -0.0009 13 8 3.9204 4.8898 -0.0014 14 6 5.3495 4.8898 -0.0013 15 6 5.8518 6.3106 -0.0025 16 6 6.0822 6.9633 1.1941 17 6 6.5424 8.2667 1.1930 18 6 6.7671 8.9194 -0.0046 19 14 7.3818 10.6834 -0.0062 20 6 9.2447 10.6919 -0.0102 21 6 6.7534 11.5586 -1.5259 22 6 6.7600 11.5588 1.5163 23 6 6.5419 8.2650 -1.2013 24 6 6.0816 6.9615 -1.2002 25 6 4.0586 2.5148 -0.0004 26 6 3.4317 1.2842 0.0001 27 6 4.2524 0.0204 0.0013 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2126 2.3181 -0.0005 32 1 1.5060 5.5712 -0.7167 33 1 0.7870 4.8866 2.0116 34 1 5.7128 4.3756 -0.8911 35 1 5.7128 4.3763 0.8889 36 1 5.9017 6.4551 2.1298 37 1 6.7220 8.7768 2.1279 38 1 9.6085 10.1797 -0.9009 39 1 9.6033 11.7212 -0.0106 40 1 9.6123 10.1798 0.8790 41 1 5.6635 11.5536 -1.5236 42 1 7.1117 12.5881 -1.5266 43 1 7.1172 11.0464 -2.4167 44 1 7.1277 11.0467 2.4055 45 1 7.1182 12.5883 1.5153 46 1 5.6700 11.5538 1.5187 47 1 6.7212 8.7735 -2.1370 48 1 5.9013 6.4516 -2.1351 49 1 5.1372 2.5713 -0.0007 50 1 4.4498 -0.2838 1.0292 51 1 3.7042 -0.7694 -0.5124 52 1 5.1969 0.2000 -0.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16525064_9276060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:43:29 Heat of formation + Delta-G solvation = -95.507337 kcal Electronic energy + Delta-G solvation = -29717.080283 eV Core-core repulsion = 25770.831060 eV Total energy + Delta-G solvation = -3946.249223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.82304 -40.45361 -39.60877 -38.16764 -37.21223 -34.18284 -32.92476 -31.87036 -30.43959 -29.45605 -29.25603 -28.44955 -28.29362 -28.26644 -27.23318 -25.12478 -23.47446 -23.43354 -22.34852 -21.84127 -19.27168 -18.68434 -18.21718 -17.49625 -17.34041 -17.10632 -16.69135 -16.35509 -16.03458 -15.90283 -15.58845 -15.39845 -14.93826 -14.66409 -14.40592 -14.38164 -14.31454 -14.12402 -14.06008 -13.92335 -13.81822 -13.72934 -13.45785 -13.13447 -13.12563 -13.09067 -12.96584 -12.95947 -12.78440 -12.69804 -12.48742 -12.45722 -12.24109 -11.91056 -11.83506 -11.67769 -11.31174 -10.91826 -10.76796 -10.75691 -10.40512 -9.98076 -9.79407 -9.67271 -8.74874 0.00676 0.17972 0.33921 0.53340 1.08386 1.33072 1.44857 1.82798 1.84265 2.01258 2.02717 2.28389 2.37404 2.48993 2.67233 3.03903 3.42586 3.54897 3.65829 3.77293 3.82429 3.90336 3.99732 4.11595 4.23228 4.25058 4.30715 4.31182 4.37695 4.48206 4.51064 4.53637 4.67338 4.72286 4.76024 4.76968 4.84991 4.85184 4.88933 4.89526 4.89815 4.90765 4.91269 5.00462 5.01742 5.16947 5.21454 5.33131 5.41750 5.51674 5.57581 5.59370 5.61550 5.68213 5.70844 6.13496 6.23837 6.43334 6.68885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.083 3.917 4 C -0.176 4.176 5 C -0.131 4.131 6 C -0.073 4.073 7 O -0.548 6.548 8 Si 0.978 3.022 9 H -0.238 1.238 10 H -0.269 1.269 11 H -0.254 1.254 12 C 0.113 3.887 13 O -0.312 6.312 14 C 0.098 3.902 15 C -0.101 4.101 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.374 4.374 19 Si 1.126 2.874 20 C -0.460 4.460 21 C -0.462 4.462 22 C -0.463 4.463 23 C -0.104 4.104 24 C -0.122 4.122 25 C -0.174 4.174 26 C -0.079 4.079 27 C -0.106 4.106 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.147 0.853 32 H 0.107 0.893 33 H 0.385 0.615 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.140 0.860 48 H 0.128 0.872 49 H 0.153 0.847 50 H 0.077 0.923 51 H 0.069 0.931 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -0.761 -0.118 1.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.240 6.240 3 C 0.038 3.962 4 C -0.194 4.194 5 C -0.132 4.132 6 C -0.182 4.182 7 O -0.355 6.355 8 Si 0.800 3.200 9 H -0.161 1.161 10 H -0.194 1.194 11 H -0.178 1.178 12 C 0.067 3.933 13 O -0.226 6.226 14 C 0.024 3.976 15 C -0.101 4.101 16 C -0.139 4.139 17 C -0.122 4.122 18 C -0.413 4.413 19 Si 1.313 2.687 20 C -0.567 4.567 21 C -0.569 4.569 22 C -0.570 4.570 23 C -0.122 4.122 24 C -0.140 4.140 25 C -0.192 4.192 26 C -0.080 4.080 27 C -0.163 4.163 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.164 0.836 32 H 0.125 0.875 33 H 0.233 0.767 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.158 0.842 48 H 0.145 0.855 49 H 0.171 0.829 50 H 0.096 0.904 51 H 0.088 0.912 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.163 -0.552 -0.665 0.879 hybrid contribution 0.036 -0.623 0.393 0.737 sum 0.199 -1.174 -0.272 1.222 Atomic orbital electron populations 1.23373 0.77030 1.05819 1.01948 1.86068 1.22734 1.26077 1.89096 1.18777 0.92071 0.84523 1.00819 1.21118 1.00580 0.91056 1.06665 1.19500 0.91733 0.95480 1.06472 1.24940 1.09739 0.94437 0.89095 1.86536 1.87339 1.45062 1.16549 0.85346 0.73846 0.79849 0.80963 1.16142 1.19351 1.17806 1.18769 0.91625 0.84581 0.98288 1.86225 1.21323 1.26487 1.88580 1.21735 0.78300 0.94628 1.02979 1.19616 1.01095 0.95098 0.94303 1.21354 0.99136 0.95940 0.97510 1.21377 0.97444 0.94092 0.99268 1.28068 1.02472 1.16995 0.93785 0.77189 0.65390 0.60045 0.66071 1.26252 1.21274 1.04689 1.04472 1.26276 1.06362 1.08529 1.15759 1.26292 1.06309 1.08547 1.15868 1.21388 0.97408 0.94106 0.99252 1.21372 0.99244 0.95928 0.97477 1.21211 1.01005 0.90423 1.06596 1.19378 0.90874 0.96422 1.01350 1.20688 0.99090 0.93365 1.03146 0.91908 0.92136 0.86064 0.83587 0.87545 0.76693 0.90055 0.90311 0.85791 0.84411 0.91299 0.90592 0.91358 0.91484 0.90566 0.90844 0.90931 0.90563 0.91522 0.84247 0.85452 0.82902 0.90399 0.91164 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.33 -1.40 9.54 -93.35 -0.89 -2.29 16 3 C 0.08 0.45 6.66 22.49 0.15 0.60 16 4 C -0.18 -0.72 7.65 22.35 0.17 -0.55 16 5 C -0.13 -0.76 5.27 -19.78 -0.10 -0.86 16 6 C -0.07 -0.33 2.37 71.24 0.17 -0.16 16 7 O -0.55 -3.20 12.88 -148.98 -1.92 -5.12 16 8 Si 0.98 1.16 25.48 68.60 1.75 2.91 16 9 H -0.24 0.36 6.74 99.48 0.67 1.03 16 10 H -0.27 -1.11 7.11 99.48 0.71 -0.41 16 11 H -0.25 -0.51 7.11 99.48 0.71 0.20 16 12 C 0.11 0.76 6.66 22.49 0.15 0.91 16 13 O -0.31 -2.50 9.45 -93.31 -0.88 -3.38 16 14 C 0.10 0.30 4.86 71.24 0.35 0.65 16 15 C -0.10 -0.51 5.51 -19.86 -0.11 -0.62 16 16 C -0.12 -0.58 9.70 22.27 0.22 -0.36 16 17 C -0.10 -0.27 9.29 22.27 0.21 -0.06 16 18 C -0.37 -0.36 4.59 22.27 0.10 -0.26 16 19 Si 1.13 -5.19 12.32 68.60 0.85 -4.35 16 20 C -0.46 1.44 8.65 113.37 0.98 2.42 16 21 C -0.46 1.50 8.54 113.37 0.97 2.46 16 22 C -0.46 1.36 8.53 113.37 0.97 2.33 16 23 C -0.10 -0.22 9.29 22.27 0.21 -0.01 16 24 C -0.12 -0.50 9.70 22.27 0.22 -0.28 16 25 C -0.17 -0.68 8.69 22.35 0.19 -0.48 16 26 C -0.08 -0.36 5.89 -19.78 -0.12 -0.47 16 27 C -0.11 -0.07 9.79 71.24 0.70 0.63 16 28 H 0.06 -0.25 7.66 -2.39 -0.02 -0.27 16 29 H 0.06 -0.22 7.66 -2.39 -0.02 -0.24 16 30 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.15 0.06 3.12 -2.91 -0.01 0.05 16 32 H 0.11 0.65 7.82 -2.39 -0.02 0.63 16 33 H 0.38 -0.57 8.70 -74.06 -0.64 -1.21 16 34 H 0.08 0.00 7.60 -2.39 -0.02 -0.02 16 35 H 0.08 0.05 7.60 -2.39 -0.02 0.03 16 36 H 0.12 0.34 8.06 -2.91 -0.02 0.32 16 37 H 0.14 -0.22 7.43 -2.91 -0.02 -0.24 16 38 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 39 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 40 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 41 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 42 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 43 H 0.07 -0.28 7.69 -2.39 -0.02 -0.30 16 44 H 0.07 -0.24 7.69 -2.38 -0.02 -0.26 16 45 H 0.08 -0.28 7.96 -2.39 -0.02 -0.29 16 46 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 47 H 0.14 -0.33 7.44 -2.91 -0.02 -0.35 16 48 H 0.13 0.17 8.06 -2.91 -0.02 0.15 16 49 H 0.15 -0.08 6.29 -2.91 -0.02 -0.10 16 50 H 0.08 -0.03 8.14 -2.38 -0.02 -0.05 16 51 H 0.07 0.12 7.53 -2.39 -0.02 0.10 16 52 H 0.08 -0.18 8.08 -2.39 -0.02 -0.20 16 Total: 0.00 -15.17 422.53 6.41 -8.76 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: 0.99 Total: -3.51 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 6.52 Total: 6.97 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -3.69 Total: -10.78 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.59 Total: -1.44 kcal Total: -15.17 6.41 -8.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16525064_9276060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.752 kcal (2) G-P(sol) polarization free energy of solvation -15.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds