Wall clock time and date at job start Mon Mar 8 2021 14:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35904 * 116.99628 * 180.02562 * 12 11 10 14 14 C 1.38714 * 120.05562 * 359.72525 * 13 12 11 15 15 C 1.38166 * 119.94023 * 179.78636 * 14 13 12 16 16 N 1.48005 * 119.97062 * 180.22710 * 15 14 13 17 17 O 1.21806 * 120.00063 * 180.25511 * 16 15 14 18 18 O 1.21795 * 119.99896 * 0.26426 * 16 15 14 19 19 C 1.38250 * 120.05585 * 0.49134 * 15 14 13 20 20 C 1.38285 * 120.11300 * 359.74100 * 19 15 14 21 21 C 1.38122 * 120.05166 * 0.02562 * 20 19 15 22 22 C 1.50710 * 120.02384 * 179.97438 * 21 20 19 23 23 O 1.42900 * 109.47024 * 105.02340 * 22 21 20 24 24 Si 1.86294 * 109.47184 * 345.02138 * 22 21 20 25 25 H 1.48503 * 109.47393 * 59.99760 * 24 22 21 26 26 H 1.48496 * 109.47261 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47084 * 300.00355 * 24 22 21 28 28 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 29 29 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 30 30 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 33 33 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 34 34 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 35 35 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 36 36 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 37 37 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 38 38 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 39 39 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 40 40 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 41 41 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 42 42 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 43 43 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 44 44 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 45 45 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 46 46 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 47 47 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 48 48 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 49 49 H 1.07996 * 120.03043 * 0.02562 * 14 13 12 50 50 H 1.08003 * 119.94331 * 179.72109 * 19 15 14 51 51 H 1.07996 * 119.96916 * 180.02562 * 20 19 15 52 52 H 1.09000 * 109.46690 * 225.01941 * 22 21 20 53 53 H 0.96696 * 113.99590 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6978 -7.6066 4.6626 14 6 2.4981 -7.1893 5.7159 15 6 2.8078 -8.0676 6.7366 16 7 3.6575 -7.6216 7.8634 17 8 3.9347 -8.3967 8.7611 18 8 4.0795 -6.4794 7.8930 19 6 2.3292 -9.3641 6.7035 20 6 1.5351 -9.7840 5.6521 21 6 1.2187 -8.9084 4.6318 22 6 0.3537 -9.3668 3.4859 23 8 -0.9582 -8.8191 3.6307 24 14 0.2540 -11.2270 3.4886 25 1 -0.3366 -11.6893 4.7703 26 1 -0.5978 -11.6787 2.3592 27 1 1.6173 -11.7961 3.3382 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2494 37 1 1.8938 -0.5134 3.9323 38 1 1.8934 1.0279 3.0423 39 1 0.4400 0.0002 3.0423 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1503 1.5217 42 1 4.3774 -1.3909 2.4118 43 1 1.6655 -2.7116 3.5652 44 1 3.1185 -3.2254 2.6746 45 1 1.8274 -5.0693 1.6337 46 1 0.3749 -4.5551 2.5246 47 1 3.0051 -5.4633 3.7796 48 1 1.5528 -4.9492 4.6711 49 1 2.8756 -6.1778 5.7402 50 1 2.5761 -10.0504 7.5001 51 1 1.1621 -10.7972 5.6288 52 1 0.7873 -9.0275 2.5451 53 1 -1.5702 -9.0728 2.9263 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_16525086_18527724.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:53:07 Heat of formation + Delta-G solvation = -149.692662 kcal Electronic energy + Delta-G solvation = -31885.975493 eV Core-core repulsion = 27463.727125 eV Total energy + Delta-G solvation = -4422.248368 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.181 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.18385 -41.74783 -39.34190 -38.25440 -37.82006 -37.50476 -36.89454 -34.08533 -33.46136 -31.50130 -29.50357 -29.15540 -28.86985 -27.92070 -27.44346 -27.14785 -25.56682 -24.15778 -23.11947 -22.34676 -20.80876 -20.46801 -19.68168 -18.75345 -18.47614 -18.40003 -17.81660 -17.71346 -17.46802 -17.27195 -16.36766 -16.25765 -15.99938 -15.72294 -15.36782 -14.94175 -14.90954 -14.79276 -14.62825 -14.50664 -14.22640 -14.03135 -13.73555 -13.50814 -13.41003 -13.37318 -13.25177 -13.11918 -12.98821 -12.97986 -12.72882 -12.56043 -12.46636 -12.46410 -12.33125 -12.19904 -12.06379 -12.04144 -11.99145 -11.79971 -11.77171 -11.53265 -11.42937 -10.76973 -10.53480 -10.45096 -10.13832 -9.80764 -1.30892 -0.25874 0.24953 0.34229 0.88682 1.21664 1.23799 1.29952 1.65917 1.69302 1.79632 1.97268 1.97404 2.38120 2.98957 3.14704 3.32661 3.43606 3.62220 3.64827 3.68618 3.76869 3.87462 3.98471 4.05144 4.06645 4.07389 4.12076 4.17752 4.27298 4.40169 4.41763 4.52829 4.60351 4.62402 4.66006 4.66405 4.72246 4.75966 4.80105 4.84686 4.86136 4.94525 4.95358 5.04967 5.05405 5.13907 5.28386 5.33111 5.35892 5.36055 5.43791 5.48026 5.53579 5.87987 6.40181 6.65913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.289 2.711 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.623 6.623 9 C 0.089 3.911 10 C -0.121 4.121 11 C 0.049 3.951 12 O -0.288 6.288 13 C 0.165 3.835 14 C -0.154 4.154 15 C 0.001 3.999 16 N 0.025 4.975 17 O -0.148 6.148 18 O -0.156 6.156 19 C -0.085 4.085 20 C -0.083 4.083 21 C -0.057 4.057 22 C -0.080 4.080 23 O -0.538 6.538 24 Si 0.941 3.059 25 H -0.243 1.243 26 H -0.247 1.247 27 H -0.244 1.244 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.161 0.839 50 H 0.161 0.839 51 H 0.155 0.845 52 H 0.086 0.914 53 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 -1.218 -4.236 4.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.420 2.580 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.582 6.582 9 C 0.013 3.987 10 C -0.158 4.158 11 C -0.026 4.026 12 O -0.200 6.200 13 C 0.117 3.883 14 C -0.174 4.174 15 C -0.082 4.082 16 N 0.546 4.454 17 O -0.366 6.366 18 O -0.372 6.372 19 C -0.104 4.104 20 C -0.102 4.102 21 C -0.058 4.058 22 C -0.190 4.190 23 O -0.344 6.344 24 Si 0.762 3.238 25 H -0.167 1.167 26 H -0.171 1.171 27 H -0.167 1.167 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.179 0.821 50 H 0.179 0.821 51 H 0.172 0.828 52 H 0.104 0.896 53 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.105 -2.270 -4.592 5.538 hybrid contribution 0.421 1.115 0.115 1.197 sum -1.684 -1.155 -4.476 4.920 Atomic orbital electron populations 1.21514 0.93783 1.02010 1.01838 1.25783 1.00712 1.02662 1.12671 1.21558 1.00791 0.94872 1.02195 1.21515 1.00606 1.00228 0.96788 0.76692 0.63014 0.53251 0.65043 1.27041 1.07051 1.09585 1.17709 1.27040 1.25005 1.04855 1.04472 1.85326 1.79341 1.46120 1.47435 1.21797 0.98188 0.91376 0.87346 1.21499 1.03602 0.93214 0.97532 1.22932 0.98925 0.80353 1.00392 1.86183 1.70114 1.21966 1.41754 1.18376 0.92885 0.89767 0.87281 1.21066 1.00863 1.01963 0.93465 1.20832 1.01013 0.96156 0.90161 1.43582 0.99656 1.00635 1.01539 1.94575 1.61282 1.51252 1.29507 1.94557 1.54769 1.04086 1.83764 1.20929 0.96066 0.93580 0.99810 1.20997 0.96900 1.00532 0.91729 1.19109 0.98500 0.91280 0.96904 1.24669 0.85571 1.10743 0.97970 1.86509 1.19646 1.75594 1.52665 0.85839 0.82454 0.73532 0.81994 1.16677 1.17085 1.16730 0.92684 0.92759 0.92163 0.92497 0.92470 0.92487 0.92171 0.92766 0.92695 0.91453 0.90628 0.90829 0.90847 0.90620 0.91455 0.92234 0.92253 0.89456 0.89305 0.91067 0.90998 0.82120 0.82116 0.82824 0.89617 0.76765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.05 7.85 37.16 0.29 0.34 16 2 C -0.37 0.29 0.53 -90.62 -0.05 0.25 16 3 C -0.14 0.14 7.85 37.16 0.29 0.43 16 4 C -0.13 0.06 7.85 37.16 0.29 0.35 16 5 Si 1.29 -2.19 8.45 -169.99 -1.44 -3.63 16 6 C -0.51 0.62 8.50 101.05 0.86 1.48 16 7 C -0.51 0.67 8.50 101.05 0.86 1.53 16 8 O -0.62 0.44 8.56 -35.23 -0.30 0.13 16 9 C 0.09 -0.20 5.12 37.16 0.19 -0.01 16 10 C -0.12 0.25 5.95 -26.73 -0.16 0.09 16 11 C 0.05 -0.11 4.74 37.16 0.18 0.07 16 12 O -0.29 0.02 9.47 -19.44 -0.18 -0.16 16 13 C 0.16 0.05 6.66 -39.22 -0.26 -0.21 16 14 C -0.15 -0.07 8.54 -39.43 -0.34 -0.40 16 15 C 0.00 0.00 6.85 -79.98 -0.55 -0.55 16 16 N 0.02 0.10 4.45 33.95 0.15 0.25 16 17 O -0.15 -0.71 18.45 -29.46 -0.54 -1.26 16 18 O -0.16 -0.74 18.45 -29.46 -0.54 -1.28 16 19 C -0.08 0.01 9.55 -39.56 -0.38 -0.37 16 20 C -0.08 0.08 8.66 -39.61 -0.34 -0.26 16 21 C -0.06 0.01 5.31 -104.47 -0.55 -0.54 16 22 C -0.08 0.14 2.37 36.01 0.09 0.23 16 23 O -0.54 0.57 12.86 -35.23 -0.45 0.12 16 24 Si 0.94 -2.43 25.49 -169.99 -4.33 -6.76 16 25 H -0.24 0.46 6.73 56.52 0.38 0.84 16 26 H -0.25 0.55 7.11 56.52 0.40 0.95 16 27 H -0.24 0.49 7.11 56.52 0.40 0.90 16 28 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 29 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.06 -0.01 7.96 -51.93 -0.41 -0.43 16 31 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 32 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 34 H 0.06 -0.02 7.96 -51.93 -0.41 -0.43 16 35 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 36 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 37 H 0.07 -0.11 7.48 -51.93 -0.39 -0.49 16 38 H 0.07 -0.10 7.79 -51.92 -0.40 -0.51 16 39 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 40 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 42 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 43 H 0.06 -0.20 7.21 -51.93 -0.37 -0.58 16 44 H 0.06 -0.21 7.21 -51.93 -0.37 -0.59 16 45 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 46 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 47 H 0.07 -0.25 7.65 -51.93 -0.40 -0.65 16 48 H 0.07 -0.22 7.67 -51.93 -0.40 -0.62 16 49 H 0.16 -0.16 5.85 -52.49 -0.31 -0.46 16 50 H 0.16 -0.26 7.61 -52.48 -0.40 -0.66 16 51 H 0.15 -0.46 4.89 -52.49 -0.26 -0.72 16 52 H 0.09 -0.24 7.83 -51.93 -0.41 -0.65 16 53 H 0.38 -2.05 8.74 45.56 0.40 -1.65 16 LS Contribution 430.55 15.07 6.49 6.49 Total: 0.00 -6.70 430.55 -9.03 -15.73 By element: Atomic # 1 Polarization: -3.77 SS G_CDS: -8.29 Total: -12.06 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 0.42 Total: 2.43 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: 0.15 Total: 0.25 kcal Atomic # 8 Polarization: -0.42 SS G_CDS: -2.03 Total: -2.45 kcal Atomic # 14 Polarization: -4.62 SS G_CDS: -5.77 Total: -10.39 kcal Total LS contribution 6.49 Total: 6.49 kcal Total: -6.70 -9.03 -15.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16525086_18527724.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.961 kcal (2) G-P(sol) polarization free energy of solvation -6.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds