Wall clock time and date at job start Mon Mar 8 2021 14:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35904 * 116.99628 * 180.02562 * 12 11 10 14 14 C 1.38714 * 120.05562 * 359.72525 * 13 12 11 15 15 C 1.38166 * 119.94023 * 179.78636 * 14 13 12 16 16 N 1.48005 * 119.97062 * 180.22710 * 15 14 13 17 17 O 1.21806 * 120.00063 * 180.25511 * 16 15 14 18 18 O 1.21795 * 119.99896 * 0.26426 * 16 15 14 19 19 C 1.38250 * 120.05585 * 0.49134 * 15 14 13 20 20 C 1.38285 * 120.11300 * 359.74100 * 19 15 14 21 21 C 1.38122 * 120.05166 * 0.02562 * 20 19 15 22 22 C 1.50710 * 120.02384 * 179.97438 * 21 20 19 23 23 O 1.42900 * 109.47024 * 105.02340 * 22 21 20 24 24 Si 1.86294 * 109.47184 * 345.02138 * 22 21 20 25 25 H 1.48503 * 109.47393 * 59.99760 * 24 22 21 26 26 H 1.48496 * 109.47261 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47084 * 300.00355 * 24 22 21 28 28 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 29 29 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 30 30 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 33 33 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 34 34 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 35 35 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 36 36 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 37 37 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 38 38 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 39 39 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 40 40 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 41 41 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 42 42 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 43 43 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 44 44 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 45 45 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 46 46 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 47 47 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 48 48 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 49 49 H 1.07996 * 120.03043 * 0.02562 * 14 13 12 50 50 H 1.08003 * 119.94331 * 179.72109 * 19 15 14 51 51 H 1.07996 * 119.96916 * 180.02562 * 20 19 15 52 52 H 1.09000 * 109.46690 * 225.01941 * 22 21 20 53 53 H 0.96696 * 113.99590 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6978 -7.6066 4.6626 14 6 2.4981 -7.1893 5.7159 15 6 2.8078 -8.0676 6.7366 16 7 3.6575 -7.6216 7.8634 17 8 3.9347 -8.3967 8.7611 18 8 4.0795 -6.4794 7.8930 19 6 2.3292 -9.3641 6.7035 20 6 1.5351 -9.7840 5.6521 21 6 1.2187 -8.9084 4.6318 22 6 0.3537 -9.3668 3.4859 23 8 -0.9582 -8.8191 3.6307 24 14 0.2540 -11.2270 3.4886 25 1 -0.3366 -11.6893 4.7703 26 1 -0.5978 -11.6787 2.3592 27 1 1.6173 -11.7961 3.3382 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2494 37 1 1.8938 -0.5134 3.9323 38 1 1.8934 1.0279 3.0423 39 1 0.4400 0.0002 3.0423 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1503 1.5217 42 1 4.3774 -1.3909 2.4118 43 1 1.6655 -2.7116 3.5652 44 1 3.1185 -3.2254 2.6746 45 1 1.8274 -5.0693 1.6337 46 1 0.3749 -4.5551 2.5246 47 1 3.0051 -5.4633 3.7796 48 1 1.5528 -4.9492 4.6711 49 1 2.8756 -6.1778 5.7402 50 1 2.5761 -10.0504 7.5001 51 1 1.1621 -10.7972 5.6288 52 1 0.7873 -9.0275 2.5451 53 1 -1.5702 -9.0728 2.9263 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16525086_18527724.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:53:05 Heat of formation + Delta-G solvation = -142.099206 kcal Electronic energy + Delta-G solvation = -31885.646216 eV Core-core repulsion = 27463.727125 eV Total energy + Delta-G solvation = -4421.919091 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.181 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.39281 -41.71874 -39.25450 -38.12128 -37.77959 -37.69185 -36.82627 -34.00946 -33.37939 -31.45311 -29.38094 -29.05912 -28.94540 -27.84167 -27.37598 -26.99332 -25.60317 -24.06724 -23.06852 -22.25470 -20.88669 -20.40451 -19.90303 -18.74481 -18.55488 -18.36272 -17.73232 -17.56275 -17.38730 -17.17794 -16.22194 -16.13397 -15.90694 -15.59617 -15.23826 -14.86579 -14.80888 -14.70093 -14.53927 -14.39101 -14.12522 -13.92615 -13.64183 -13.38625 -13.33634 -13.27084 -13.14367 -12.97635 -12.95166 -12.90536 -12.81405 -12.66383 -12.48371 -12.39611 -12.39236 -12.16223 -12.09120 -12.02287 -11.81942 -11.70114 -11.69748 -11.37374 -11.30410 -10.74065 -10.35431 -10.31697 -10.05641 -9.76499 -1.45514 -0.21729 0.09821 0.19828 1.08907 1.37348 1.45849 1.52285 1.78295 1.88889 1.91681 2.00108 2.12290 2.50346 3.10950 3.21721 3.38270 3.48271 3.78124 3.83553 3.86912 3.89426 4.03251 4.10379 4.12896 4.13401 4.30732 4.30848 4.33395 4.46028 4.47131 4.49687 4.57771 4.74044 4.74517 4.78196 4.79263 4.80082 4.82712 4.83269 4.92481 5.00460 5.03400 5.04038 5.09504 5.10043 5.19644 5.22158 5.35121 5.41445 5.44642 5.53882 5.60568 5.64754 5.97166 6.35310 6.76896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.384 4.384 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.320 2.680 6 C -0.520 4.520 7 C -0.519 4.519 8 O -0.638 6.638 9 C 0.077 3.923 10 C -0.116 4.116 11 C 0.043 3.957 12 O -0.297 6.297 13 C 0.157 3.843 14 C -0.155 4.155 15 C -0.017 4.017 16 N 0.027 4.973 17 O -0.170 6.170 18 O -0.174 6.174 19 C -0.082 4.082 20 C -0.082 4.082 21 C -0.063 4.063 22 C -0.085 4.085 23 O -0.557 6.557 24 Si 0.976 3.024 25 H -0.251 1.251 26 H -0.252 1.252 27 H -0.251 1.251 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.171 0.829 50 H 0.174 0.826 51 H 0.175 0.825 52 H 0.095 0.905 53 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 -1.746 -4.457 5.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.426 4.426 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.450 2.550 6 C -0.622 4.622 7 C -0.621 4.621 8 O -0.598 6.598 9 C 0.002 3.998 10 C -0.154 4.154 11 C -0.031 4.031 12 O -0.209 6.209 13 C 0.110 3.890 14 C -0.174 4.174 15 C -0.099 4.099 16 N 0.544 4.456 17 O -0.385 6.385 18 O -0.389 6.389 19 C -0.101 4.101 20 C -0.100 4.100 21 C -0.064 4.064 22 C -0.194 4.194 23 O -0.366 6.366 24 Si 0.797 3.203 25 H -0.175 1.175 26 H -0.175 1.175 27 H -0.174 1.174 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.098 0.902 49 H 0.188 0.812 50 H 0.191 0.809 51 H 0.192 0.808 52 H 0.113 0.887 53 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.214 -2.780 -4.815 5.984 hybrid contribution 0.381 1.276 0.091 1.335 sum -1.833 -1.504 -4.724 5.285 Atomic orbital electron populations 1.21543 0.94305 1.01783 1.01802 1.25943 1.00376 1.03022 1.13291 1.21605 1.01293 0.94751 1.02177 1.21543 1.01023 1.00036 0.96810 0.76113 0.62445 0.52574 0.63873 1.27130 1.06856 1.09900 1.18277 1.27111 1.25267 1.05042 1.04641 1.85315 1.79682 1.46623 1.48136 1.22017 0.99254 0.91124 0.87416 1.21438 1.02992 0.93475 0.97463 1.23092 0.99839 0.79551 1.00646 1.86169 1.70381 1.22702 1.41678 1.18479 0.93020 0.90181 0.87347 1.21179 1.00752 1.02327 0.93164 1.20967 1.01888 0.97216 0.89879 1.43891 0.99527 1.00316 1.01883 1.94553 1.62107 1.51255 1.30554 1.94534 1.55555 1.04584 1.84182 1.21171 0.95511 0.93108 1.00324 1.21237 0.96363 1.01341 0.91062 1.19490 0.98221 0.91261 0.97400 1.24820 0.85272 1.11557 0.97708 1.86459 1.20175 1.76068 1.53913 0.85335 0.81638 0.72095 0.81214 1.17528 1.17543 1.17432 0.92159 0.93387 0.92473 0.91795 0.93191 0.91854 0.92447 0.93409 0.92079 0.90930 0.90465 0.91223 0.91106 0.90463 0.90873 0.90986 0.90717 0.89866 0.90234 0.89633 0.90176 0.81192 0.80882 0.80847 0.88690 0.74815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.02 7.85 71.98 0.56 0.58 16 2 C -0.38 0.48 0.53 -10.79 -0.01 0.47 16 3 C -0.14 0.25 7.85 71.98 0.56 0.82 16 4 C -0.14 0.05 7.85 71.98 0.56 0.61 16 5 Si 1.32 -4.81 8.45 68.60 0.58 -4.23 16 6 C -0.52 1.48 8.50 113.37 0.96 2.45 16 7 C -0.52 1.67 8.50 113.37 0.96 2.64 16 8 O -0.64 1.01 8.56 -148.98 -1.28 -0.27 16 9 C 0.08 -0.39 5.12 71.98 0.37 -0.02 16 10 C -0.12 0.49 5.95 30.59 0.18 0.68 16 11 C 0.04 -0.21 4.74 71.98 0.34 0.13 16 12 O -0.30 0.12 9.47 -92.47 -0.88 -0.76 16 13 C 0.16 0.06 6.66 22.51 0.15 0.21 16 14 C -0.15 -0.15 8.54 22.37 0.19 0.04 16 15 C -0.02 -0.06 6.85 36.36 0.25 0.19 16 16 N 0.03 0.24 4.45 -46.51 -0.21 0.04 16 17 O -0.17 -1.82 18.45 18.88 0.35 -1.47 16 18 O -0.17 -1.84 18.45 18.89 0.35 -1.49 16 19 C -0.08 0.03 9.55 22.28 0.21 0.25 16 20 C -0.08 0.22 8.66 22.25 0.19 0.41 16 21 C -0.06 0.06 5.31 -19.77 -0.10 -0.05 16 22 C -0.08 0.36 2.37 71.24 0.17 0.53 16 23 O -0.56 1.52 12.86 -148.98 -1.92 -0.39 16 24 Si 0.98 -6.03 25.49 68.60 1.75 -4.28 16 25 H -0.25 1.24 6.73 99.48 0.67 1.91 16 26 H -0.25 1.38 7.11 99.48 0.71 2.09 16 27 H -0.25 1.28 7.11 99.48 0.71 1.99 16 28 H 0.06 -0.09 7.79 -2.39 -0.02 -0.10 16 29 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.06 0.02 7.96 -2.38 -0.02 0.00 16 31 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 32 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 33 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 34 H 0.06 0.00 7.96 -2.39 -0.02 -0.01 16 35 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 36 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 37 H 0.07 -0.28 7.48 -2.39 -0.02 -0.30 16 38 H 0.08 -0.24 7.79 -2.38 -0.02 -0.26 16 39 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 40 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 41 H 0.08 -0.27 7.79 -2.39 -0.02 -0.28 16 42 H 0.07 -0.32 7.48 -2.38 -0.02 -0.34 16 43 H 0.07 -0.55 7.21 -2.39 -0.02 -0.57 16 44 H 0.07 -0.61 7.21 -2.39 -0.02 -0.63 16 45 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.09 -0.66 7.65 -2.39 -0.02 -0.68 16 48 H 0.08 -0.52 7.67 -2.39 -0.02 -0.54 16 49 H 0.17 -0.32 5.85 -2.91 -0.02 -0.33 16 50 H 0.17 -0.60 7.61 -2.91 -0.02 -0.62 16 51 H 0.17 -1.26 4.89 -2.91 -0.01 -1.27 16 52 H 0.10 -0.61 7.83 -2.39 -0.02 -0.63 16 53 H 0.40 -4.53 8.74 -74.06 -0.65 -5.18 16 Total: 0.00 -15.44 430.55 5.29 -10.15 By element: Atomic # 1 Polarization: -8.21 SS G_CDS: 0.97 Total: -7.24 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.57 Total: 9.95 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -0.21 Total: 0.04 kcal Atomic # 8 Polarization: -1.01 SS G_CDS: -3.37 Total: -4.38 kcal Atomic # 14 Polarization: -10.85 SS G_CDS: 2.33 Total: -8.52 kcal Total: -15.44 5.29 -10.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16525086_18527724.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.951 kcal (2) G-P(sol) polarization free energy of solvation -15.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds