Wall clock time and date at job start Mon Mar 8 2021 15:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38323 * 119.97931 * 2 1 4 4 Br 1.89099 * 119.95019 * 359.97438 * 3 2 1 5 5 C 1.38367 * 120.09473 * 179.72669 * 3 2 1 6 6 C 1.38116 * 120.04340 * 0.26768 * 5 3 2 7 7 C 1.38754 * 119.95534 * 0.02562 * 6 5 3 8 8 O 1.35917 * 120.04277 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00406 * 359.97438 * 8 7 6 10 10 O 1.42899 * 109.46813 * 75.00432 * 9 8 7 11 11 Si 1.63107 * 114.00150 * 179.97438 * 10 9 8 12 12 C 1.86296 * 109.46951 * 300.00438 * 11 10 9 13 13 C 1.86300 * 109.46705 * 59.99940 * 11 10 9 14 14 C 1.86295 * 109.47336 * 179.97438 * 11 10 9 15 15 C 1.53001 * 109.46995 * 60.00251 * 14 11 10 16 16 C 1.52998 * 109.47283 * 179.97438 * 14 11 10 17 17 C 1.53000 * 109.47330 * 300.00467 * 14 11 10 18 18 C 1.38162 * 119.97906 * 180.27118 * 2 1 3 19 19 C 1.50706 * 120.02263 * 0.02562 * 18 2 1 20 20 O 1.42900 * 109.46779 * 243.17685 * 19 18 2 21 21 Si 1.86296 * 109.47219 * 123.17924 * 19 18 2 22 22 H 1.48498 * 109.47350 * 66.28196 * 21 19 18 23 23 H 1.48502 * 109.46831 * 186.28079 * 21 19 18 24 24 H 1.48500 * 109.47277 * 306.27812 * 21 19 18 25 25 H 1.09005 * 109.46778 * 95.40862 * 1 2 3 26 26 H 1.08994 * 109.47392 * 215.40722 * 1 2 3 27 27 H 1.08995 * 109.47272 * 335.41612 * 1 2 3 28 28 H 1.07990 * 119.97967 * 180.29850 * 5 3 2 29 29 H 1.07996 * 120.02525 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47315 * 195.00057 * 9 8 7 31 31 H 1.09002 * 109.47395 * 315.00823 * 9 8 7 32 32 H 1.09000 * 109.47535 * 59.99405 * 12 11 10 33 33 H 1.09005 * 109.47235 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.47185 * 299.99137 * 12 11 10 35 35 H 1.08998 * 109.46993 * 60.00290 * 13 11 10 36 36 H 1.09001 * 109.46979 * 179.97438 * 13 11 10 37 37 H 1.08996 * 109.47463 * 299.99889 * 13 11 10 38 38 H 1.09000 * 109.47386 * 59.99454 * 15 14 11 39 39 H 1.08996 * 109.47221 * 180.02562 * 15 14 11 40 40 H 1.09001 * 109.47148 * 300.00044 * 15 14 11 41 41 H 1.08999 * 109.46789 * 59.99804 * 16 14 11 42 42 H 1.08996 * 109.47016 * 180.02562 * 16 14 11 43 43 H 1.08998 * 109.47249 * 300.00396 * 16 14 11 44 44 H 1.09001 * 109.47146 * 59.99752 * 17 14 11 45 45 H 1.09000 * 109.47372 * 180.02562 * 17 14 11 46 46 H 1.08999 * 109.46580 * 300.00096 * 17 14 11 47 47 H 1.08995 * 109.47097 * 3.17490 * 19 18 2 48 48 H 0.96697 * 114.00526 * 299.99690 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1982 0.0000 4 35 1.2507 2.8346 -0.0007 5 6 3.5818 1.2010 0.0057 6 6 4.2757 0.0068 0.0058 7 6 3.5844 -1.1963 -0.0003 8 8 4.2654 -2.3725 -0.0007 9 6 5.6923 -2.2960 0.0048 10 8 6.1444 -1.9257 1.3088 11 14 7.7658 -1.8063 1.4399 12 6 8.5442 -3.4495 1.0342 13 6 8.3911 -0.5132 0.2535 14 6 8.2139 -1.3191 3.1813 15 6 7.7003 -2.3807 4.1561 16 6 9.7349 -1.2078 3.3044 17 6 7.5746 0.0306 3.5138 18 6 2.1974 -1.1968 -0.0057 19 6 1.4439 -2.5019 -0.0124 20 8 1.7318 -3.2243 1.1865 21 14 1.9664 -3.5130 -1.4873 22 1 3.3886 -3.9123 -1.3350 23 1 1.1182 -4.7284 -1.5797 24 1 1.8089 -2.7044 -2.7228 25 1 -0.3633 -0.0969 -1.0232 26 1 -0.3634 -0.8375 0.5954 27 1 -0.3633 0.9345 0.4275 28 1 4.1195 2.1375 0.0106 29 1 5.3557 0.0093 0.0107 30 1 6.1093 -3.2671 -0.2621 31 1 6.0190 -1.5490 -0.7187 32 1 8.2820 -3.7342 0.0152 33 1 9.6278 -3.3697 1.1213 34 1 8.1784 -4.2062 1.7284 35 1 7.9356 0.4482 0.4908 36 1 9.4746 -0.4331 0.3413 37 1 8.1289 -0.7978 -0.7655 38 1 8.1557 -3.3422 3.9191 39 1 7.9621 -2.0954 5.1749 40 1 6.6168 -2.4605 4.0685 41 1 10.1012 -0.4517 2.6098 42 1 9.9970 -0.9231 4.3233 43 1 10.1899 -2.1695 3.0676 44 1 6.4911 -0.0492 3.4263 45 1 7.8372 0.3159 4.5325 46 1 7.9405 0.7868 2.8193 47 1 0.3737 -2.3033 -0.0688 48 1 2.6681 -3.4360 1.3029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16926656_14468166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:28:02 Heat of formation + Delta-G solvation = -135.055869 kcal Electronic energy + Delta-G solvation = -27747.162881 eV Core-core repulsion = 23972.285263 eV Total energy + Delta-G solvation = -3774.877617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 390.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78710 -39.41092 -37.64999 -36.96575 -36.83359 -33.94958 -33.05001 -30.45275 -29.44417 -29.09812 -28.01330 -27.85003 -27.39060 -27.21653 -26.37917 -22.55860 -22.19687 -20.45604 -19.11195 -18.58197 -18.20916 -18.01554 -16.95413 -16.31356 -15.98194 -15.80369 -15.52247 -15.36283 -15.03727 -14.87226 -14.79227 -14.72672 -14.45496 -14.29561 -13.99938 -13.74146 -13.51900 -13.38877 -13.24429 -13.19874 -13.12296 -12.97420 -12.93836 -12.90939 -12.79678 -12.40767 -12.27982 -12.06742 -11.90551 -11.87926 -11.62292 -11.59338 -11.41568 -11.28515 -11.10322 -10.53371 -10.41688 -10.09084 -9.72531 -9.21387 0.00947 0.08455 0.65125 1.13122 1.34567 1.53489 1.56734 1.68280 1.95200 2.05997 2.11978 2.45246 2.46482 3.44493 3.62152 3.71436 3.78376 3.93804 4.00369 4.10134 4.10861 4.14045 4.25945 4.37936 4.43982 4.64078 4.66653 4.71790 4.72920 4.73863 4.77648 4.77884 4.81231 4.81933 4.94204 4.99263 5.05243 5.08417 5.08688 5.12685 5.14494 5.25322 5.26475 5.36232 5.39800 5.45288 5.50097 5.59572 5.64953 6.09939 6.65948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.014 4.014 3 C -0.141 4.141 4 Br -0.048 7.048 5 C -0.052 4.052 6 C -0.194 4.194 7 C 0.143 3.857 8 O -0.304 6.304 9 C 0.226 3.774 10 O -0.658 6.658 11 Si 1.326 2.674 12 C -0.521 4.521 13 C -0.521 4.521 14 C -0.384 4.384 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.137 4.137 18 C -0.156 4.156 19 C -0.075 4.075 20 O -0.549 6.549 21 Si 0.961 3.039 22 H -0.221 1.221 23 H -0.267 1.267 24 H -0.265 1.265 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.158 0.842 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.063 0.937 47 H 0.128 0.872 48 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -0.878 -2.780 4.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.016 4.016 3 C -0.221 4.221 4 Br 0.038 6.962 5 C -0.072 4.072 6 C -0.213 4.213 7 C 0.098 3.902 8 O -0.219 6.219 9 C 0.115 3.885 10 O -0.618 6.618 11 Si 1.457 2.543 12 C -0.623 4.623 13 C -0.624 4.624 14 C -0.426 4.426 15 C -0.195 4.195 16 C -0.199 4.199 17 C -0.194 4.194 18 C -0.158 4.158 19 C -0.184 4.184 20 O -0.357 6.357 21 Si 0.783 3.217 22 H -0.143 1.143 23 H -0.192 1.192 24 H -0.189 1.189 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.154 0.846 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.146 0.854 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.996 -0.868 -3.248 4.503 hybrid contribution 1.307 0.262 0.620 1.470 sum 4.303 -0.606 -2.628 5.078 Atomic orbital electron populations 1.21228 0.88927 1.04778 1.04495 1.19598 0.97459 0.89994 0.94520 1.21766 0.95184 0.91431 1.13709 1.96691 1.75559 1.26153 1.97845 1.21149 0.91772 0.99388 0.94888 1.21410 1.01559 0.90840 1.07491 1.18932 0.90912 0.85923 0.94476 1.86338 1.21211 1.27495 1.86832 1.23981 0.77791 1.03318 0.83431 1.85323 1.53303 1.87349 1.35813 0.75959 0.49095 0.65006 0.64214 1.27105 1.09146 1.20124 1.05914 1.27107 1.08133 1.14434 1.12689 1.25978 0.99294 0.99204 1.18123 1.21546 1.00847 0.98271 0.98817 1.21609 0.93710 1.02377 1.02170 1.21538 1.00260 0.96086 1.01494 1.19582 0.90941 0.96359 1.08884 1.24986 1.03771 0.91913 0.97744 1.86458 1.32161 1.75684 1.41353 0.85569 0.82263 0.78697 0.75156 1.14312 1.19153 1.18895 0.88577 0.89367 0.90118 0.83209 0.82487 0.84641 0.89626 0.90351 0.90099 0.90977 0.90726 0.89898 0.90344 0.91895 0.93630 0.92749 0.91556 0.93364 0.91660 0.92866 0.93659 0.91767 0.85425 0.76612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.03 8.81 71.24 0.63 0.60 16 2 C -0.01 -0.05 5.88 -19.86 -0.12 -0.17 16 3 C -0.14 -0.52 6.22 22.32 0.14 -0.38 16 4 Br -0.05 -0.15 31.68 -20.37 -0.65 -0.80 16 5 C -0.05 -0.08 9.78 22.27 0.22 0.14 16 6 C -0.19 -0.07 8.78 22.36 0.20 0.12 16 7 C 0.14 0.30 5.98 22.50 0.13 0.43 16 8 O -0.30 0.12 5.64 -68.10 -0.38 -0.27 16 9 C 0.23 -1.21 5.42 113.37 0.61 -0.60 16 10 O -0.66 2.18 8.03 -126.21 -1.01 1.16 16 11 Si 1.33 -8.41 8.45 68.60 0.58 -7.83 16 12 C -0.52 3.22 8.50 113.37 0.96 4.19 16 13 C -0.52 3.64 8.50 113.37 0.96 4.60 16 14 C -0.38 0.97 0.53 -10.79 -0.01 0.97 16 15 C -0.14 0.08 7.84 71.98 0.56 0.64 16 16 C -0.14 0.46 7.85 71.98 0.56 1.03 16 17 C -0.14 0.12 7.85 71.98 0.56 0.68 16 18 C -0.16 -0.53 4.60 -19.77 -0.09 -0.62 16 19 C -0.07 -0.16 2.57 71.24 0.18 0.03 16 20 O -0.55 -2.56 12.88 -148.46 -1.91 -4.47 16 21 Si 0.96 1.20 26.38 68.60 1.81 3.01 16 22 H -0.22 0.08 5.99 99.48 0.60 0.67 16 23 H -0.27 -0.98 7.11 99.48 0.71 -0.27 16 24 H -0.26 -0.74 7.11 99.48 0.71 -0.03 16 25 H 0.10 -0.24 8.14 -2.38 -0.02 -0.26 16 26 H 0.09 -0.08 6.49 -2.39 -0.02 -0.10 16 27 H 0.08 0.05 6.39 -2.39 -0.02 0.04 16 28 H 0.15 -0.30 8.06 -2.92 -0.02 -0.33 16 29 H 0.16 -0.66 5.86 -2.91 -0.02 -0.68 16 30 H 0.14 -1.44 7.21 -2.39 -0.02 -1.46 16 31 H 0.09 -0.83 5.77 -2.39 -0.01 -0.84 16 32 H 0.08 -0.64 7.48 -2.39 -0.02 -0.66 16 33 H 0.08 -0.51 7.79 -2.38 -0.02 -0.53 16 34 H 0.07 -0.35 7.79 -2.38 -0.02 -0.37 16 35 H 0.07 -0.48 7.79 -2.39 -0.02 -0.49 16 36 H 0.08 -0.58 7.79 -2.39 -0.02 -0.60 16 37 H 0.08 -0.69 7.48 -2.39 -0.02 -0.71 16 38 H 0.06 -0.15 7.80 -2.39 -0.02 -0.17 16 39 H 0.04 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.05 0.04 7.97 -2.39 -0.02 0.02 16 41 H 0.07 -0.34 7.79 -2.39 -0.02 -0.36 16 42 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.06 -0.32 7.79 -2.39 -0.02 -0.34 16 44 H 0.05 0.03 7.97 -2.39 -0.02 0.01 16 45 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 47 H 0.13 -0.04 5.48 -2.39 -0.01 -0.06 16 48 H 0.38 0.45 7.16 -74.06 -0.53 -0.08 16 Total: 0.00 -10.39 390.58 5.02 -5.37 By element: Atomic # 1 Polarization: -8.91 SS G_CDS: 1.06 Total: -7.85 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.52 Total: 11.67 kcal Atomic # 8 Polarization: -0.27 SS G_CDS: -3.31 Total: -3.58 kcal Atomic # 14 Polarization: -7.21 SS G_CDS: 2.39 Total: -4.82 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.65 Total: -0.80 kcal Total: -10.39 5.02 -5.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16926656_14468166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.681 kcal (2) G-P(sol) polarization free energy of solvation -10.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds