Wall clock time and date at job start Mon Mar 8 2021 15:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38126 * 119.97162 * 2 1 4 4 C 1.50700 * 120.02378 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47340 * 120.84922 * 4 3 2 6 6 Si 1.86298 * 109.46756 * 240.85027 * 4 3 2 7 7 C 1.38748 * 119.94978 * 179.97438 * 3 2 1 8 8 O 1.35913 * 120.04049 * 180.02562 * 7 3 2 9 9 C 1.42905 * 116.99829 * 180.02562 * 8 7 3 10 10 C 1.53000 * 109.47020 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47339 * 304.99832 * 10 9 8 12 12 C 1.53005 * 109.47034 * 65.00255 * 10 9 8 13 13 C 1.53003 * 109.46790 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47098 * 299.99736 * 13 12 10 15 15 H 1.08995 * 109.47110 * 300.00130 * 14 13 12 16 16 O 1.42898 * 109.46903 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47085 * 60.00444 * 14 13 12 18 18 C 1.53001 * 109.46761 * 184.99935 * 10 9 8 19 19 C 1.38703 * 119.90874 * 0.28107 * 7 3 2 20 20 C 1.38163 * 119.95606 * 359.42399 * 19 7 3 21 21 C 1.38325 * 120.04432 * 0.57183 * 20 19 7 22 22 Br 1.89094 * 119.95369 * 179.74439 * 21 20 19 23 23 H 1.08996 * 109.47232 * 84.45837 * 1 2 3 24 24 H 1.09001 * 109.46622 * 204.45409 * 1 2 3 25 25 H 1.08994 * 109.47426 * 324.45115 * 1 2 3 26 26 H 1.08999 * 109.47118 * 0.84498 * 4 3 2 27 27 H 0.96707 * 113.99692 * 294.56882 * 5 4 3 28 28 H 1.48509 * 109.99704 * 294.37082 * 6 4 3 29 29 H 1.48494 * 110.00439 * 55.69068 * 6 4 3 30 30 H 1.08998 * 109.46788 * 60.00258 * 9 8 7 31 31 H 1.08995 * 109.47008 * 300.00142 * 9 8 7 32 32 H 1.08997 * 109.46636 * 299.99725 * 12 10 9 33 33 H 1.08997 * 109.47110 * 60.00074 * 12 10 9 34 34 H 1.09000 * 109.46652 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47019 * 60.00281 * 13 12 10 36 36 H 0.96705 * 113.99792 * 60.00118 * 16 14 13 37 37 H 1.08997 * 109.46636 * 179.97438 * 17 14 13 38 38 H 1.08998 * 109.46682 * 59.99724 * 17 14 13 39 39 H 1.08997 * 109.47631 * 300.00078 * 18 10 9 40 40 H 1.09000 * 109.47070 * 60.00530 * 18 10 9 41 41 H 1.08000 * 120.01939 * 179.69959 * 19 7 3 42 42 H 1.07996 * 119.97974 * 180.29997 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1965 0.0000 4 6 1.4435 2.5016 -0.0006 5 8 1.8030 3.2598 1.1560 6 14 1.8745 3.4668 -1.5347 7 6 3.5845 1.1960 0.0005 8 8 4.2654 2.3723 0.0011 9 6 5.6924 2.2959 0.0010 10 6 6.2788 3.7091 0.0010 11 1 5.8736 4.2706 -0.8408 12 6 5.9112 4.4138 1.3084 13 6 6.4981 5.8268 1.3087 14 6 8.0208 5.7465 1.1832 15 1 8.4257 5.1848 2.0250 16 8 8.5690 7.0662 1.1840 17 6 8.3884 5.0418 -0.1242 18 6 7.8015 3.6294 -0.1247 19 6 4.2757 -0.0065 -0.0048 20 6 3.5817 -1.2012 0.0013 21 6 2.1984 -1.1985 0.0009 22 35 1.2511 -2.8351 0.0021 23 1 -0.3633 0.0992 -1.0228 24 1 -0.3632 -0.9355 0.4254 25 1 -0.3634 0.8361 0.5974 26 1 0.3719 2.3024 0.0142 27 1 1.5320 2.8552 1.9915 28 1 3.3057 3.8617 -1.5008 29 1 1.6020 2.6481 -2.7432 30 1 6.0277 1.7639 -0.8892 31 1 6.0277 1.7630 0.8907 32 1 4.8264 4.4705 1.3980 33 1 6.3164 3.8523 2.1502 34 1 6.2366 6.3286 2.2403 35 1 6.0932 6.3885 0.4669 36 1 8.3749 7.5722 1.9849 37 1 9.4732 4.9851 -0.2138 38 1 7.9835 5.6036 -0.9660 39 1 8.2067 3.0679 0.7170 40 1 8.0633 3.1274 -1.0561 41 1 5.3557 -0.0090 -0.0093 42 1 4.1194 -2.1377 0.0021 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16926656_16737254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:13:07 Heat of formation + Delta-G solvation = -101.742786 kcal Electronic energy + Delta-G solvation = -24670.646216 eV Core-core repulsion = 21049.193744 eV Total energy + Delta-G solvation = -3621.452472 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.066 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79918 -40.25981 -38.97870 -37.53925 -36.74827 -34.02919 -33.27199 -31.89689 -31.85123 -30.26428 -28.14419 -26.95824 -26.40695 -23.84069 -22.94239 -22.56401 -21.60740 -20.91927 -19.00541 -18.48056 -18.21019 -17.52126 -17.26191 -16.76771 -16.43234 -15.85934 -15.52362 -15.40884 -15.29784 -14.95195 -14.82414 -14.71474 -14.29892 -14.05099 -13.75962 -13.46412 -13.31264 -13.23544 -13.16050 -13.02007 -12.76663 -12.53332 -12.30599 -12.14842 -12.12357 -11.69083 -11.63928 -11.45336 -11.29939 -11.13299 -11.08062 -10.98863 -10.73559 -9.96829 -9.25875 -4.89093 -0.06968 -0.03353 0.55931 1.40633 1.60667 2.01013 2.12070 2.32763 3.19129 3.40303 3.49578 3.58828 3.65985 3.73295 3.76360 3.88033 3.98013 4.04001 4.06485 4.16344 4.21623 4.26359 4.29643 4.31228 4.44180 4.45177 4.49337 4.53385 4.56438 4.64914 4.78059 4.84247 4.93553 5.00914 5.02586 5.03280 5.05380 5.11549 5.14921 5.15132 5.30136 5.38833 5.43919 6.18789 6.72674 6.84219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.011 4.011 3 C -0.169 4.169 4 C -0.065 4.065 5 O -0.538 6.538 6 Si 0.787 3.213 7 C 0.152 3.848 8 O -0.300 6.300 9 C 0.053 3.947 10 C -0.083 4.083 11 H 0.065 0.935 12 C -0.105 4.105 13 C -0.146 4.146 14 C 0.102 3.898 15 H 0.065 0.935 16 O -0.590 6.590 17 C -0.113 4.113 18 C -0.103 4.103 19 C -0.217 4.217 20 C -0.045 4.045 21 C -0.150 4.150 22 Br -0.044 7.044 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.374 0.626 28 H -0.269 1.269 29 H -0.292 1.292 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.393 0.607 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.156 0.844 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 0.184 2.162 2.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.013 4.013 3 C -0.171 4.171 4 C -0.174 4.174 5 O -0.343 6.343 6 Si 0.690 3.310 7 C 0.105 3.895 8 O -0.213 6.213 9 C -0.022 4.022 10 C -0.101 4.101 11 H 0.084 0.916 12 C -0.143 4.143 13 C -0.184 4.184 14 C 0.044 3.956 15 H 0.083 0.917 16 O -0.399 6.399 17 C -0.151 4.151 18 C -0.140 4.140 19 C -0.237 4.237 20 C -0.064 4.064 21 C -0.229 4.229 22 Br 0.042 6.958 23 H 0.108 0.892 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.222 0.778 28 H -0.195 1.195 29 H -0.219 1.219 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.173 0.827 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.343 0.027 0.438 0.557 hybrid contribution 0.400 -1.194 1.275 1.792 sum 0.058 -1.167 1.713 2.074 Atomic orbital electron populations 1.21233 0.88418 1.05180 1.04417 1.19712 0.97691 0.89862 0.94083 1.19708 0.91198 0.96248 1.09987 1.25091 1.00853 0.92234 0.99215 1.86733 1.83485 1.48456 1.15653 0.93507 0.82000 0.84676 0.70811 1.19108 0.91608 0.85698 0.93131 1.86290 1.20974 1.26876 1.87139 1.23148 0.77393 0.99077 1.02566 1.21174 0.95834 0.93726 0.99385 0.91638 1.21441 1.01105 0.95084 0.96627 1.22210 0.95834 0.97668 1.02665 1.21896 0.92126 0.83388 0.98223 0.91747 1.86477 1.78737 1.27765 1.46871 1.21451 1.01372 0.95468 0.96803 1.21425 0.92445 0.96370 1.03767 1.21468 1.01652 0.91060 1.09503 1.21170 0.91969 0.99225 0.94080 1.21780 0.95141 0.91692 1.14319 1.96698 1.75361 1.25908 1.97870 0.89172 0.89875 0.88509 0.88319 0.77778 1.19476 1.21919 0.91155 0.90173 0.91664 0.91007 0.90563 0.92394 0.75682 0.90954 0.92308 0.89966 0.90174 0.82666 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.23 8.87 71.24 0.63 0.86 16 2 C -0.01 -0.03 5.88 -19.86 -0.12 -0.15 16 3 C -0.17 -0.64 4.54 -19.77 -0.09 -0.72 16 4 C -0.06 -0.06 2.47 71.24 0.18 0.12 16 5 O -0.54 -0.71 12.07 -143.06 -1.73 -2.44 16 6 Si 0.79 2.25 31.48 68.60 2.16 4.41 16 7 C 0.15 0.69 6.10 22.50 0.14 0.83 16 8 O -0.30 -1.43 6.26 -86.65 -0.54 -1.98 16 9 C 0.05 -0.02 4.12 71.98 0.30 0.28 16 10 C -0.08 0.02 2.43 -10.79 -0.03 -0.01 16 11 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 12 C -0.11 0.02 5.10 30.60 0.16 0.17 16 13 C -0.15 0.03 5.54 30.60 0.17 0.20 16 14 C 0.10 0.02 3.47 30.60 0.11 0.12 16 15 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 16 O -0.59 -1.64 13.32 -148.98 -1.98 -3.62 16 17 C -0.11 -0.04 5.57 30.58 0.17 0.13 16 18 C -0.10 0.30 5.20 30.58 0.16 0.46 16 19 C -0.22 -0.42 9.04 22.36 0.20 -0.22 16 20 C -0.04 -0.10 9.78 22.27 0.22 0.12 16 21 C -0.15 -0.54 6.22 22.32 0.14 -0.40 16 22 Br -0.04 -0.12 31.68 -20.37 -0.65 -0.77 16 23 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H 0.08 -0.11 6.39 -2.39 -0.02 -0.13 16 25 H 0.10 -0.51 6.40 -2.39 -0.02 -0.52 16 26 H 0.10 -0.37 5.40 -2.39 -0.01 -0.39 16 27 H 0.37 -1.60 9.11 -74.05 -0.67 -2.28 16 28 H -0.27 -2.42 6.23 99.48 0.62 -1.80 16 29 H -0.29 -2.28 7.11 99.48 0.71 -1.58 16 30 H 0.07 -0.14 7.65 -2.39 -0.02 -0.16 16 31 H 0.08 -0.26 7.67 -2.39 -0.02 -0.28 16 32 H 0.06 0.22 7.82 -2.39 -0.02 0.20 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.39 -2.01 9.08 -74.05 -0.67 -2.68 16 37 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.08 -0.34 8.14 -2.39 -0.02 -0.35 16 41 H 0.16 -0.40 6.30 -2.91 -0.02 -0.42 16 42 H 0.15 -0.20 8.06 -2.91 -0.02 -0.22 16 Total: 0.00 -13.11 347.78 -0.77 -13.87 By element: Atomic # 1 Polarization: -10.90 SS G_CDS: -0.36 Total: -11.26 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 2.33 Total: 1.79 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -4.25 Total: -8.04 kcal Atomic # 14 Polarization: 2.25 SS G_CDS: 2.16 Total: 4.41 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.65 Total: -0.77 kcal Total: -13.11 -0.77 -13.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16926656_16737254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.871 kcal (2) G-P(sol) polarization free energy of solvation -13.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds