Wall clock time and date at job start Mon Mar 8 2021 13:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86296 * 109.47314 * 2 1 4 4 C 1.86307 * 109.47114 * 240.00059 * 2 1 3 5 5 C 1.86298 * 109.47089 * 120.00394 * 2 1 3 6 6 O 1.42902 * 109.47217 * 66.56980 * 5 2 1 7 7 C 1.35940 * 117.00341 * 282.08019 * 6 5 2 8 8 C 1.38721 * 119.98745 * 353.85688 * 7 6 5 9 9 C 1.38082 * 120.01059 * 179.97438 * 8 7 6 10 10 C 1.38809 * 119.99426 * 359.97438 * 9 8 7 11 11 N 1.40289 * 120.01840 * 180.02562 * 10 9 8 12 12 C 1.35200 * 126.04825 * 4.71306 * 11 10 9 13 13 C 1.35344 * 107.71206 * 179.87917 * 12 11 10 14 14 C 1.39895 * 107.93185 * 0.38544 * 13 12 11 15 15 N 1.30888 * 108.24261 * 359.76556 * 14 13 12 16 16 C 1.38860 * 119.97079 * 0.02562 * 10 9 8 17 17 C 1.38047 * 119.99150 * 0.02562 * 16 10 9 18 18 C 1.50706 * 119.99197 * 179.97438 * 17 16 10 19 19 O 1.42900 * 109.46936 * 104.97863 * 18 17 16 20 20 Si 1.86295 * 109.47332 * 344.97867 * 18 17 16 21 21 H 1.48501 * 109.47228 * 60.00066 * 20 18 17 22 22 H 1.48497 * 109.47137 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46968 * 300.00140 * 20 18 17 24 24 H 1.08994 * 109.47007 * 295.55095 * 1 2 3 25 25 H 1.09002 * 109.46745 * 55.54803 * 1 2 3 26 26 H 1.08999 * 109.47058 * 175.54628 * 1 2 3 27 27 H 1.08997 * 109.47187 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47474 * 300.00248 * 3 2 1 29 29 H 1.09004 * 109.46561 * 60.00272 * 3 2 1 30 30 H 1.08995 * 109.47148 * 305.01295 * 4 2 1 31 31 H 1.08999 * 109.46704 * 65.00820 * 4 2 1 32 32 H 1.08997 * 109.47359 * 185.00601 * 4 2 1 33 33 H 1.09000 * 109.47236 * 306.57395 * 5 2 1 34 34 H 1.09001 * 109.47091 * 186.57124 * 5 2 1 35 35 H 1.08009 * 119.99270 * 359.97365 * 8 7 6 36 36 H 1.08004 * 120.00394 * 179.72032 * 9 8 7 37 37 H 1.07998 * 126.14279 * 0.02562 * 12 11 10 38 38 H 1.07999 * 126.03083 * 180.15194 * 13 12 11 39 39 H 1.08000 * 125.87807 * 179.73594 * 14 13 12 40 40 H 1.08005 * 120.00426 * 180.02562 * 16 10 9 41 41 H 1.08997 * 109.46678 * 224.97572 * 18 17 16 42 42 H 0.96700 * 114.00078 * 299.99574 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 8 2.1377 -2.2627 1.4465 7 6 0.8522 -2.5941 1.7392 8 6 -0.0222 -1.6272 2.2134 9 6 -1.3282 -1.9631 2.5104 10 6 -1.7663 -3.2684 2.3341 11 7 -3.0932 -3.6101 2.6352 12 6 -4.0681 -2.7546 3.0166 13 6 -5.1973 -3.4759 3.2077 14 6 -4.9015 -4.8173 2.9429 15 7 -3.6410 -4.8989 2.5999 16 6 -0.8905 -4.2359 1.8594 17 6 0.4152 -3.8993 1.5638 18 6 1.3659 -4.9494 1.0492 19 8 1.5704 -4.7609 -0.3525 20 14 0.6448 -6.6407 1.3496 21 1 -0.6542 -6.7583 0.6396 22 1 1.5818 -7.6754 0.8432 23 1 0.4321 -6.8365 2.8063 24 1 -0.3633 0.4432 0.9271 25 1 -0.3633 0.5814 -0.8474 26 1 -0.3633 -1.0246 -0.0798 27 1 3.5740 1.7564 0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1207 2.2702 0.8901 30 1 2.0493 -1.8767 -1.5672 31 1 2.1958 -0.3152 -2.4089 32 1 3.5703 -0.9566 -1.4775 33 1 2.0278 -0.4370 2.4072 34 1 3.5677 -0.7776 1.5818 35 1 0.3186 -0.6114 2.3502 36 1 -2.0077 -1.2112 2.8838 37 1 -3.9650 -1.6871 3.1435 38 1 -6.1563 -3.0853 3.5145 39 1 -5.5939 -5.6434 3.0105 40 1 -1.2309 -5.2516 1.7216 41 1 2.3192 -4.8630 1.5704 42 1 0.7625 -4.8245 -0.8799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16951038_3095236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:08:07 Heat of formation + Delta-G solvation = 21.050282 kcal Electronic energy + Delta-G solvation = -23651.991508 eV Core-core repulsion = 20337.928351 eV Total energy + Delta-G solvation = -3314.063157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53696 -41.34959 -38.69737 -37.68785 -34.11052 -33.00317 -31.26275 -29.79421 -29.60700 -28.35500 -28.28225 -27.58151 -26.84666 -24.18281 -23.34261 -21.69814 -21.37489 -19.56646 -18.73834 -17.99897 -17.15162 -16.77808 -16.60030 -16.17409 -15.83416 -15.65060 -15.47661 -15.10122 -14.70894 -14.37557 -14.22765 -13.94838 -13.85707 -13.83003 -13.67231 -13.56832 -13.29359 -13.18653 -13.11694 -12.95536 -12.87186 -12.55091 -12.29158 -12.02379 -11.77574 -11.69135 -11.27136 -10.81724 -10.74870 -10.44048 -10.42629 -10.14978 -9.92009 -8.64647 -0.19107 0.01058 1.07758 1.12409 1.32822 1.39063 1.43163 1.61265 1.80186 1.82622 1.83046 1.89426 2.47242 2.52904 2.64017 3.30209 3.50391 3.67556 3.78339 3.88969 4.03000 4.06420 4.19420 4.34216 4.43751 4.55377 4.71241 4.74768 4.76336 4.80456 4.82306 4.84831 4.85995 4.86688 4.89758 4.95798 5.04257 5.07813 5.12726 5.38438 5.57307 5.66111 5.66461 5.67373 6.13052 6.37975 6.60986 6.65902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.055 2.945 3 C -0.456 4.456 4 C -0.466 4.466 5 C -0.268 4.268 6 O -0.292 6.292 7 C 0.138 3.862 8 C -0.174 4.174 9 C -0.086 4.086 10 C 0.105 3.895 11 N -0.331 5.331 12 C 0.049 3.951 13 C -0.269 4.269 14 C 0.048 3.952 15 N -0.344 5.344 16 C -0.107 4.107 17 C -0.142 4.142 18 C -0.058 4.058 19 O -0.541 6.541 20 Si 0.966 3.034 21 H -0.258 1.258 22 H -0.262 1.262 23 H -0.266 1.266 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.175 0.825 36 H 0.165 0.835 37 H 0.212 0.788 38 H 0.177 0.823 39 H 0.210 0.790 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 6.561 1.282 6.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.247 2.753 3 C -0.564 4.564 4 C -0.572 4.572 5 C -0.387 4.387 6 O -0.204 6.204 7 C 0.091 3.909 8 C -0.193 4.193 9 C -0.107 4.107 10 C 0.013 3.987 11 N -0.107 5.107 12 C -0.093 4.093 13 C -0.298 4.298 14 C -0.138 4.138 15 N -0.165 5.165 16 C -0.127 4.127 17 C -0.144 4.144 18 C -0.170 4.170 19 O -0.348 6.348 20 Si 0.791 3.209 21 H -0.183 1.183 22 H -0.187 1.187 23 H -0.190 1.190 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.192 0.808 36 H 0.183 0.817 37 H 0.229 0.771 38 H 0.195 0.805 39 H 0.227 0.773 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.018 4.894 1.213 5.042 hybrid contribution -1.166 0.556 0.059 1.293 sum -1.184 5.450 1.272 5.720 Atomic orbital electron populations 1.26578 1.20517 1.04259 1.05464 0.78849 0.66679 0.65339 0.64427 1.26146 1.06670 1.18321 1.05266 1.26321 1.06210 1.08213 1.16434 1.28576 1.08046 0.84887 1.17154 1.86115 1.23550 1.27735 1.83016 1.18896 0.84923 0.92821 0.94258 1.21514 0.93090 1.01226 1.03422 1.20909 0.96773 0.93379 0.99612 1.17563 0.81317 0.95024 1.04820 1.45985 1.07609 1.05677 1.51461 1.23294 0.87824 0.99030 0.99175 1.22003 1.01011 0.92761 1.13981 1.24611 0.92815 0.99574 0.96766 1.77409 1.12280 1.00116 1.26652 1.20639 0.92245 0.99700 1.00080 1.19467 0.94097 0.94533 1.06291 1.24669 1.03047 1.04299 0.84975 1.86526 1.37337 1.95180 1.15724 0.85485 0.78836 0.76206 0.80344 1.18260 1.18661 1.19010 0.89426 0.90938 0.92018 0.90908 0.90870 0.90058 0.91976 0.91429 0.91641 0.89191 0.86231 0.80789 0.81747 0.77139 0.80516 0.77308 0.85188 0.85953 0.76710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.58 7.04 113.37 0.80 3.37 16 2 Si 1.05 -7.13 11.68 68.60 0.80 -6.33 16 3 C -0.46 3.11 8.65 113.37 0.98 4.09 16 4 C -0.47 0.30 8.65 113.37 0.98 1.28 16 5 C -0.27 1.32 5.31 113.37 0.60 1.92 16 6 O -0.29 -0.55 9.12 -92.87 -0.85 -1.40 16 7 C 0.14 0.28 5.77 22.51 0.13 0.41 16 8 C -0.17 0.44 5.63 22.35 0.13 0.56 16 9 C -0.09 0.15 9.45 22.37 0.21 0.36 16 10 C 0.10 0.50 6.68 38.07 0.25 0.76 16 11 N -0.33 -2.10 3.80 -187.68 -0.71 -2.81 16 12 C 0.05 0.01 10.79 83.51 0.90 0.92 16 13 C -0.27 -0.09 10.81 22.00 0.24 0.15 16 14 C 0.05 0.19 12.03 85.23 1.02 1.21 16 15 N -0.34 -3.42 11.88 -56.98 -0.68 -4.09 16 16 C -0.11 -0.69 8.27 22.37 0.19 -0.51 16 17 C -0.14 -0.63 5.27 -19.78 -0.10 -0.73 16 18 C -0.06 -0.22 2.37 71.24 0.17 -0.05 16 19 O -0.54 -2.16 12.88 -148.98 -1.92 -4.08 16 20 Si 0.97 4.58 25.49 68.60 1.75 6.33 16 21 H -0.26 -1.54 6.73 99.48 0.67 -0.87 16 22 H -0.26 -1.65 7.11 99.48 0.71 -0.94 16 23 H -0.27 -1.95 7.11 99.48 0.71 -1.24 16 24 H 0.09 -0.78 6.50 -2.39 -0.02 -0.80 16 25 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 26 H 0.06 -0.13 6.55 -2.39 -0.02 -0.15 16 27 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 28 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 29 H 0.08 -0.69 7.96 -2.38 -0.02 -0.71 16 30 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 31 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 32 H 0.06 -0.01 7.96 -2.39 -0.02 -0.02 16 33 H 0.09 -0.79 6.06 -2.39 -0.01 -0.80 16 34 H 0.12 -0.80 7.96 -2.39 -0.02 -0.82 16 35 H 0.18 -1.53 4.23 -2.91 -0.01 -1.54 16 36 H 0.17 -1.37 6.76 -2.91 -0.02 -1.39 16 37 H 0.21 -1.76 7.06 -2.91 -0.02 -1.79 16 38 H 0.18 -0.92 8.06 -2.91 -0.02 -0.95 16 39 H 0.21 -0.51 8.06 -2.91 -0.02 -0.53 16 40 H 0.13 1.11 4.53 -2.91 -0.01 1.10 16 41 H 0.12 0.38 7.83 -2.39 -0.02 0.36 16 42 H 0.38 -0.77 8.70 -74.06 -0.64 -1.42 16 Total: 0.00 -18.44 340.54 6.00 -12.44 By element: Atomic # 1 Polarization: -14.90 SS G_CDS: 1.11 Total: -13.79 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 6.50 Total: 13.74 kcal Atomic # 7 Polarization: -5.52 SS G_CDS: -1.39 Total: -6.91 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: -2.77 Total: -5.48 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: 2.55 Total: 0.00 kcal Total: -18.44 6.00 -12.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16951038_3095236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.491 kcal (2) G-P(sol) polarization free energy of solvation -18.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds