Wall clock time and date at job start Mon Mar 8 2021 15:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46868 * 2 1 4 4 C 1.52999 * 109.46920 * 240.00128 * 2 1 3 5 5 Si 1.86296 * 109.47019 * 120.00287 * 2 1 3 6 6 C 1.86300 * 109.47207 * 299.99841 * 5 2 1 7 7 C 1.86303 * 109.47131 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47117 * 59.99907 * 5 2 1 9 9 C 1.42905 * 113.99904 * 179.97438 * 8 5 2 10 10 C 1.53004 * 109.47085 * 179.97438 * 9 8 5 11 11 S 1.81394 * 109.46960 * 180.02562 * 10 9 8 12 12 C 1.81408 * 102.99810 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46846 * 180.02562 * 12 11 10 14 14 C 1.34517 * 125.78686 * 90.00186 * 13 12 11 15 15 C 1.41385 * 106.83572 * 179.97438 * 14 13 12 16 16 C 1.34506 * 106.84311 * 0.02562 * 15 14 13 17 17 C 1.50703 * 125.79043 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47153 * 300.00448 * 17 16 15 19 19 Si 1.86296 * 109.47213 * 180.02562 * 17 16 15 20 20 H 1.48497 * 109.47477 * 60.00255 * 19 17 16 21 21 H 1.48502 * 109.47279 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47310 * 299.99961 * 19 17 16 23 23 O 1.34299 * 125.78804 * 269.69151 * 13 12 11 24 24 H 1.08999 * 109.47481 * 299.99923 * 1 2 3 25 25 H 1.09008 * 109.47376 * 59.99711 * 1 2 3 26 26 H 1.09002 * 109.47564 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47030 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47769 * 299.99751 * 3 2 1 29 29 H 1.09007 * 109.47051 * 60.00445 * 3 2 1 30 30 H 1.08994 * 109.47742 * 300.00075 * 4 2 1 31 31 H 1.09006 * 109.47157 * 60.00661 * 4 2 1 32 32 H 1.09004 * 109.46751 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47270 * 179.97438 * 6 5 2 34 34 H 1.08999 * 109.46919 * 300.00239 * 6 5 2 35 35 H 1.09004 * 109.46832 * 60.00244 * 6 5 2 36 36 H 1.08993 * 109.47062 * 300.00406 * 7 5 2 37 37 H 1.08999 * 109.46582 * 60.00008 * 7 5 2 38 38 H 1.08998 * 109.47087 * 179.97438 * 7 5 2 39 39 H 1.09002 * 109.46585 * 60.00623 * 9 8 5 40 40 H 1.08997 * 109.47461 * 300.00110 * 9 8 5 41 41 H 1.09005 * 109.46565 * 60.00407 * 10 9 8 42 42 H 1.08997 * 109.47094 * 300.00376 * 10 9 8 43 43 H 1.09000 * 109.46602 * 60.00357 * 12 11 10 44 44 H 1.09000 * 109.47286 * 300.00088 * 12 11 10 45 45 H 1.08001 * 126.57970 * 359.96428 * 14 13 12 46 46 H 1.07999 * 126.57298 * 180.02562 * 15 14 13 47 47 H 1.08997 * 109.46915 * 60.00239 * 17 16 15 48 48 H 0.96706 * 113.99656 * 299.99347 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8790 1.5207 8 8 1.6073 -2.4160 1.5210 9 6 2.0294 -3.1818 2.6513 10 6 1.4634 -4.5994 2.5469 11 16 1.9987 -5.5712 3.9820 12 6 1.2418 -7.1924 3.6822 13 6 1.5989 -8.1292 4.8075 14 6 0.8941 -8.3030 5.9399 15 6 1.5855 -9.2674 6.7087 16 6 2.6717 -9.6247 6.0003 17 6 3.7089 -10.6320 6.4252 18 8 4.3144 -10.2056 7.6473 19 14 5.0137 -10.7753 5.1032 20 1 5.6607 -9.4541 4.9009 21 1 6.0354 -11.7684 5.5217 22 1 4.3848 -11.2182 3.8329 23 8 2.6715 -8.9364 4.8470 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6767 -1.7488 -1.2494 31 1 1.6767 -0.2073 -2.1393 32 1 3.1300 -0.7208 -1.2495 33 1 1.8929 -0.5142 3.9322 34 1 1.8933 1.0275 3.0422 35 1 0.4400 -0.0002 3.0422 36 1 4.3769 -1.3929 0.6307 37 1 4.3776 0.1486 1.5205 38 1 4.3773 -1.3925 2.4109 39 1 1.6652 -2.7119 3.5649 40 1 3.1182 -3.2256 2.6743 41 1 1.8273 -5.0695 1.6332 42 1 0.3746 -4.5552 2.5241 43 1 1.6119 -7.5975 2.7404 44 1 0.1585 -7.0837 3.6304 45 1 -0.0237 -7.8020 6.2101 46 1 1.2969 -9.6446 7.6786 47 1 3.2340 -11.6017 6.5741 48 1 4.7571 -9.3478 7.5885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_18313520_18345148.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:41:12 Heat of formation + Delta-G solvation = -114.934354 kcal Electronic energy + Delta-G solvation = -23738.394682 eV Core-core repulsion = 20237.822229 eV Total energy + Delta-G solvation = -3500.572453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.74744 -38.22307 -37.99188 -36.83871 -34.32361 -33.18118 -31.88150 -29.49717 -29.35522 -29.07967 -27.84404 -27.38895 -25.47406 -23.95714 -22.94076 -21.33503 -20.42650 -18.79619 -18.16787 -17.73686 -17.56056 -16.82462 -16.78916 -16.12207 -15.94727 -15.71185 -15.51982 -15.03302 -14.91629 -14.86026 -14.76761 -14.16522 -14.04785 -14.00070 -13.89749 -13.76286 -13.43273 -13.40758 -13.21413 -13.13781 -12.96039 -12.95186 -12.88999 -12.80488 -12.39664 -12.25659 -12.05087 -11.79830 -11.72948 -11.50482 -11.40365 -11.20611 -10.94108 -10.59716 -10.36786 -10.07425 -9.44323 -8.80857 -0.08470 0.81640 1.05281 1.31859 1.41266 1.44319 1.63788 1.72013 1.76809 1.80819 1.89235 2.08621 2.47483 3.29449 3.45192 3.78120 3.84840 3.89500 4.02615 4.11652 4.12162 4.12372 4.32993 4.34747 4.45963 4.47376 4.63433 4.65691 4.72060 4.72689 4.76115 4.76659 4.79081 4.82309 4.83007 4.92633 4.98992 4.99998 5.09032 5.09624 5.18530 5.32015 5.38322 5.40706 5.45266 5.46747 5.57535 5.62428 5.99355 6.53887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.380 4.380 3 C -0.141 4.141 4 C -0.138 4.138 5 Si 1.317 2.683 6 C -0.519 4.519 7 C -0.520 4.520 8 O -0.634 6.634 9 C 0.095 3.905 10 C -0.088 4.088 11 S -0.271 6.271 12 C 0.000 4.000 13 C -0.012 4.012 14 C -0.185 4.185 15 C -0.183 4.183 16 C -0.059 4.059 17 C -0.034 4.034 18 O -0.539 6.539 19 Si 0.987 3.013 20 H -0.266 1.266 21 H -0.252 1.252 22 H -0.264 1.264 23 O -0.185 6.185 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.152 0.848 48 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 0.236 -0.385 1.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.423 4.423 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.448 2.552 6 C -0.620 4.620 7 C -0.622 4.622 8 O -0.593 6.593 9 C 0.018 3.982 10 C -0.236 4.236 11 S -0.043 6.043 12 C -0.147 4.147 13 C -0.063 4.063 14 C -0.207 4.207 15 C -0.202 4.202 16 C -0.110 4.110 17 C -0.144 4.144 18 O -0.346 6.346 19 Si 0.810 3.190 20 H -0.190 1.190 21 H -0.176 1.176 22 H -0.189 1.189 23 O -0.083 6.083 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.155 0.845 45 H 0.187 0.813 46 H 0.182 0.818 47 H 0.170 0.830 48 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.095 -0.240 -0.392 0.469 hybrid contribution -0.843 0.759 -0.737 1.353 sum -0.938 0.519 -1.129 1.557 Atomic orbital electron populations 1.21549 0.94114 1.01864 1.01915 1.25877 1.00502 1.02982 1.12917 1.21608 1.01281 0.94678 1.02292 1.21549 1.01002 1.00064 0.96850 0.76184 0.62348 0.52495 0.64212 1.27105 1.07008 1.09897 1.18027 1.27127 1.25528 1.05044 1.04457 1.85314 1.79665 1.46586 1.47751 1.21707 0.98902 0.90008 0.87586 1.23438 1.05376 0.96773 0.98011 1.87302 1.71677 1.10364 1.34999 1.21747 1.04921 0.90559 0.97458 1.21655 0.88781 0.96710 0.99115 1.21958 1.03229 1.01610 0.93904 1.21858 0.95313 1.00623 1.02410 1.23252 1.01446 1.00314 0.85975 1.24374 0.98272 0.96425 0.95343 1.86537 1.73360 1.42755 1.31955 0.85090 0.77372 0.80629 0.75859 1.19026 1.17604 1.18857 1.83888 1.42011 1.44848 1.37556 0.92070 0.93250 0.92405 0.91861 0.93008 0.91782 0.92432 0.93231 0.92174 0.91267 0.90276 0.90959 0.91102 0.90278 0.91331 0.90978 0.91286 0.88352 0.87841 0.87074 0.84514 0.81336 0.81817 0.83044 0.75793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.04 7.85 71.98 0.56 0.60 16 2 C -0.38 0.38 0.53 -10.79 -0.01 0.37 16 3 C -0.14 0.23 7.85 71.98 0.56 0.80 16 4 C -0.14 0.01 7.85 71.98 0.56 0.57 16 5 Si 1.32 -3.31 8.45 68.60 0.58 -2.73 16 6 C -0.52 0.94 8.50 113.37 0.96 1.91 16 7 C -0.52 0.75 8.50 113.37 0.96 1.72 16 8 O -0.63 0.22 8.56 -148.98 -1.28 -1.06 16 9 C 0.09 -0.14 5.13 71.98 0.37 0.23 16 10 C -0.09 0.19 6.31 71.98 0.45 0.65 16 11 S -0.27 -0.30 21.72 -56.49 -1.23 -1.53 16 12 C 0.00 0.00 6.47 71.24 0.46 0.46 16 13 C -0.01 -0.03 6.58 24.84 0.16 0.13 16 14 C -0.19 -0.32 10.81 22.19 0.24 -0.08 16 15 C -0.18 -0.43 10.79 22.19 0.24 -0.19 16 16 C -0.06 -0.16 6.22 24.83 0.15 -0.01 16 17 C -0.03 0.03 2.99 71.24 0.21 0.25 16 18 O -0.54 0.19 12.87 -148.98 -1.92 -1.73 16 19 Si 0.99 0.15 27.39 68.60 1.88 2.03 16 20 H -0.27 -0.79 7.11 99.48 0.71 -0.08 16 21 H -0.25 -0.27 7.11 99.48 0.71 0.43 16 22 H -0.26 -0.72 7.11 99.48 0.71 -0.02 16 23 O -0.18 -0.96 9.05 -2.49 -0.02 -0.98 16 24 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 25 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 26 H 0.06 0.00 7.97 -2.39 -0.02 -0.02 16 27 H 0.06 -0.19 7.79 -2.38 -0.02 -0.21 16 28 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.06 -0.20 7.79 -2.38 -0.02 -0.22 16 30 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 31 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.06 -0.08 7.79 -2.38 -0.02 -0.09 16 33 H 0.07 -0.14 7.48 -2.39 -0.02 -0.15 16 34 H 0.08 -0.20 7.79 -2.39 -0.02 -0.22 16 35 H 0.07 -0.10 7.79 -2.38 -0.02 -0.12 16 36 H 0.07 -0.06 7.79 -2.39 -0.02 -0.08 16 37 H 0.08 -0.18 7.79 -2.39 -0.02 -0.19 16 38 H 0.07 -0.11 7.48 -2.39 -0.02 -0.12 16 39 H 0.07 -0.21 7.21 -2.39 -0.02 -0.23 16 40 H 0.07 -0.16 7.21 -2.39 -0.02 -0.18 16 41 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.14 -0.88 8.14 -2.39 -0.02 -0.90 16 45 H 0.17 -0.37 8.06 -2.91 -0.02 -0.39 16 46 H 0.16 -0.05 8.06 -2.91 -0.02 -0.07 16 47 H 0.15 -0.72 7.96 -2.39 -0.02 -0.73 16 48 H 0.39 -2.29 8.70 -74.05 -0.64 -2.94 16 Total: 0.00 -11.36 403.15 4.95 -6.42 By element: Atomic # 1 Polarization: -8.86 SS G_CDS: 1.02 Total: -7.84 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.91 Total: 7.41 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -3.21 Total: -3.77 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: 2.46 Total: -0.70 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -1.23 Total: -1.53 kcal Total: -11.36 4.95 -6.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_18313520_18345148.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.517 kcal (2) G-P(sol) polarization free energy of solvation -11.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds