Wall clock time and date at job start Mon Mar 8 2021 15:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 117.00120 * 2 1 4 4 C 1.38717 * 120.05407 * 0.02562 * 3 2 1 5 5 C 1.38158 * 119.94326 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.05742 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94735 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47147 * 245.00352 * 7 6 5 9 9 Si 1.86299 * 109.46748 * 4.99994 * 7 6 5 10 10 H 1.48503 * 109.47188 * 60.00070 * 9 7 6 11 11 H 1.48506 * 109.47139 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47505 * 299.99883 * 9 7 6 13 13 C 1.38293 * 120.11270 * 0.25175 * 6 5 4 14 14 C 1.38126 * 120.05159 * 359.45046 * 13 6 5 15 15 C 1.50700 * 120.02638 * 180.25098 * 14 13 6 16 16 S 1.81399 * 109.47001 * 270.31816 * 15 14 13 17 17 C 1.81400 * 102.99651 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47021 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47215 * 180.02562 * 18 17 16 20 20 Si 1.63094 * 114.00201 * 179.97438 * 19 18 17 21 21 C 1.86298 * 109.47290 * 300.00193 * 20 19 18 22 22 C 1.86305 * 109.47088 * 59.99813 * 20 19 18 23 23 C 1.86292 * 109.47411 * 179.97438 * 20 19 18 24 24 C 1.53004 * 109.47176 * 60.00173 * 23 20 19 25 25 C 1.52997 * 109.47461 * 180.02562 * 23 20 19 26 26 C 1.53006 * 109.47246 * 300.00076 * 23 20 19 27 27 H 1.09004 * 109.46757 * 299.99706 * 1 2 3 28 28 H 1.08996 * 109.47426 * 59.99626 * 1 2 3 29 29 H 1.08994 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.02365 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.97304 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47318 * 124.99465 * 7 6 5 33 33 H 0.96695 * 114.00385 * 59.99326 * 8 7 6 34 34 H 1.08002 * 119.97160 * 179.70751 * 13 6 5 35 35 H 1.09000 * 109.47125 * 30.32042 * 15 14 13 36 36 H 1.09002 * 109.46977 * 150.31619 * 15 14 13 37 37 H 1.08998 * 109.47540 * 299.99788 * 17 16 15 38 38 H 1.09001 * 109.47518 * 60.00193 * 17 16 15 39 39 H 1.09004 * 109.46563 * 299.99633 * 18 17 16 40 40 H 1.08993 * 109.47351 * 59.99590 * 18 17 16 41 41 H 1.09000 * 109.47116 * 59.99127 * 21 20 19 42 42 H 1.08998 * 109.47489 * 180.02562 * 21 20 19 43 43 H 1.09009 * 109.46865 * 300.00005 * 21 20 19 44 44 H 1.08998 * 109.47117 * 59.99558 * 22 20 19 45 45 H 1.08995 * 109.47275 * 180.02562 * 22 20 19 46 46 H 1.09003 * 109.46977 * 300.00043 * 22 20 19 47 47 H 1.08993 * 109.47242 * 59.99589 * 24 23 20 48 48 H 1.09003 * 109.47208 * 180.02562 * 24 23 20 49 49 H 1.09006 * 109.46623 * 299.99865 * 24 23 20 50 50 H 1.08998 * 109.47507 * 59.99554 * 25 23 20 51 51 H 1.09008 * 109.47350 * 180.02562 * 25 23 20 52 52 H 1.09004 * 109.46796 * 299.99885 * 25 23 20 53 53 H 1.09003 * 109.47064 * 60.00103 * 26 23 20 54 54 H 1.08995 * 109.47210 * 179.97438 * 26 23 20 55 55 H 1.08993 * 109.47148 * 300.00034 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2916 2.3750 0.0005 5 6 1.9212 3.6048 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 3.9861 5.0186 -0.0028 8 8 4.7082 5.1842 -1.2247 9 14 2.7091 6.3663 0.1514 10 1 1.9586 6.1942 1.4212 11 1 3.3833 7.6895 0.1509 12 1 1.7675 6.2896 -0.9944 13 6 4.0562 2.5168 -0.0079 14 6 3.4315 1.2848 -0.0012 15 6 4.2542 0.0222 -0.0024 16 16 4.5827 -0.4838 -1.7131 17 6 5.5662 -1.9945 -1.5100 18 6 5.9308 -2.5545 -2.8864 19 8 6.7050 -3.7449 -2.7265 20 14 7.1552 -4.4375 -4.1328 21 6 5.6385 -4.8957 -5.1128 22 6 8.1888 -3.2371 -5.1134 23 6 8.1530 -5.9703 -3.7788 24 6 7.3047 -6.9564 -2.9732 25 6 8.5758 -6.6197 -5.0980 26 6 9.3987 -5.5934 -2.9742 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2130 2.3200 0.0005 31 1 1.3343 4.5115 0.0000 32 1 4.6771 5.0750 0.8383 33 1 4.1550 5.1451 -2.0169 34 1 5.1346 2.5749 -0.0140 35 1 5.1986 0.2034 0.5107 36 1 3.7073 -0.7682 0.5117 37 1 6.4778 -1.7633 -0.9591 38 1 4.9861 -2.7343 -0.9584 39 1 5.0193 -2.7857 -3.4377 40 1 6.5110 -1.8146 -3.4377 41 1 5.0550 -3.9987 -5.3199 42 1 5.9393 -5.3590 -6.0524 43 1 5.0337 -5.5981 -4.5390 44 1 9.0761 -2.9689 -4.5400 45 1 8.4892 -3.6998 -6.0534 46 1 7.6053 -2.3400 -5.3205 47 1 6.4173 -7.2249 -3.5463 48 1 7.8887 -7.8531 -2.7657 49 1 7.0039 -6.4935 -2.0333 50 1 9.1803 -5.9171 -5.6716 51 1 9.1593 -7.5168 -4.8908 52 1 7.6886 -6.8882 -5.6715 53 1 9.0979 -5.1306 -2.0343 54 1 9.9823 -6.4903 -2.7667 55 1 10.0031 -4.8910 -3.5480 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_18313520_759148.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:41:19 Heat of formation + Delta-G solvation = -143.817244 kcal Electronic energy + Delta-G solvation = -29241.756851 eV Core-core repulsion = 25300.630564 eV Total energy + Delta-G solvation = -3941.126287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 372.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40420 -39.11276 -38.20455 -37.22568 -36.83507 -34.15651 -31.84906 -31.73086 -29.37428 -29.07423 -28.67428 -28.31882 -27.83761 -27.38546 -26.10111 -24.14830 -23.08098 -21.84881 -20.42208 -19.17728 -18.32049 -18.11727 -17.41303 -17.06605 -16.75682 -16.72445 -16.30578 -15.98269 -15.94951 -15.69280 -15.54852 -15.28040 -14.87236 -14.83453 -14.72620 -14.64934 -14.31961 -14.09279 -13.88046 -13.85108 -13.48201 -13.40298 -13.28165 -13.17483 -13.11182 -12.99241 -12.95410 -12.90613 -12.83233 -12.39324 -12.23582 -12.15242 -12.02858 -11.97304 -11.79107 -11.71984 -11.54463 -11.49453 -11.37810 -11.09214 -10.36609 -10.35661 -10.06868 -9.89847 -9.15981 -8.66828 -0.12224 0.29548 0.75207 1.20564 1.46554 1.52101 1.53316 1.69064 1.77535 1.93077 2.09493 2.30492 2.48778 2.66077 3.48663 3.56728 3.74938 3.78220 3.87956 3.90656 4.04351 4.11251 4.12016 4.12572 4.26769 4.35012 4.38008 4.39858 4.46484 4.46548 4.64623 4.65193 4.67325 4.73097 4.73423 4.74043 4.76918 4.77372 4.80142 4.82905 4.83231 4.92197 5.00297 5.09396 5.09771 5.18781 5.19073 5.19809 5.32550 5.39402 5.40925 5.42307 5.47318 5.58093 5.62867 5.69661 6.34122 6.73607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.140 3.860 4 C -0.208 4.208 5 C -0.083 4.083 6 C -0.161 4.161 7 C -0.073 4.073 8 O -0.553 6.553 9 Si 0.980 3.020 10 H -0.256 1.256 11 H -0.277 1.277 12 H -0.251 1.251 13 C -0.038 4.038 14 C -0.122 4.122 15 C -0.023 4.023 16 S -0.272 6.272 17 C -0.089 4.089 18 C 0.098 3.902 19 O -0.635 6.635 20 Si 1.314 2.686 21 C -0.518 4.518 22 C -0.518 4.518 23 C -0.379 4.379 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.137 4.137 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.388 0.612 34 H 0.141 0.859 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.063 0.937 51 H 0.051 0.949 52 H 0.063 0.937 53 H 0.055 0.945 54 H 0.049 0.951 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 0.379 0.568 3.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.092 3.908 4 C -0.227 4.227 5 C -0.102 4.102 6 C -0.162 4.162 7 C -0.184 4.184 8 O -0.360 6.360 9 Si 0.804 3.196 10 H -0.180 1.180 11 H -0.202 1.202 12 H -0.175 1.175 13 C -0.058 4.058 14 C -0.124 4.124 15 C -0.170 4.170 16 S -0.044 6.044 17 C -0.237 4.237 18 C 0.021 3.979 19 O -0.595 6.595 20 Si 1.444 2.556 21 C -0.620 4.620 22 C -0.620 4.620 23 C -0.422 4.422 24 C -0.194 4.194 25 C -0.198 4.198 26 C -0.194 4.194 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.169 0.831 31 H 0.154 0.846 32 H 0.142 0.858 33 H 0.237 0.763 34 H 0.159 0.841 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.082 0.918 53 H 0.074 0.926 54 H 0.068 0.932 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.369 1.272 0.384 3.621 hybrid contribution 0.060 -1.125 0.313 1.169 sum -3.309 0.147 0.697 3.384 Atomic orbital electron populations 1.23344 0.76513 1.05501 1.02312 1.86088 1.23224 1.26455 1.87953 1.19013 0.91771 0.85045 0.94922 1.21395 1.01318 0.91509 1.08445 1.21089 0.94067 0.97955 0.97054 1.20285 0.93573 0.96347 1.05970 1.24948 1.04100 0.98608 0.90734 1.86487 1.38572 1.95226 1.15734 0.85269 0.76646 0.76549 0.81099 1.18014 1.20234 1.17520 1.20848 1.00655 0.89754 0.94517 1.18716 0.90460 0.94496 1.08764 1.22025 1.02678 0.97821 0.94514 1.87067 1.70500 1.32835 1.13968 1.23393 1.02324 0.96478 1.01534 1.21689 0.95241 0.85738 0.95195 1.85314 1.70781 1.42234 1.61165 0.76253 0.63852 0.62727 0.52762 1.27101 1.18045 1.05930 1.10904 1.27099 1.11117 1.12866 1.10893 1.25865 1.04357 1.13104 0.98917 1.21546 0.99409 0.98695 0.99785 1.21606 1.01682 1.00798 0.95723 1.21546 0.96773 1.01323 0.99798 0.91454 0.91727 0.86760 0.83069 0.84551 0.85844 0.76349 0.84121 0.87844 0.88852 0.88629 0.88991 0.91300 0.91108 0.91336 0.90177 0.91085 0.91046 0.90194 0.91312 0.92099 0.93162 0.92569 0.91779 0.92965 0.91798 0.92555 0.93169 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.32 -0.96 9.54 -92.47 -0.88 -1.84 16 3 C 0.14 0.47 6.66 22.51 0.15 0.62 16 4 C -0.21 -0.11 9.04 22.37 0.20 0.09 16 5 C -0.08 0.00 8.66 22.25 0.19 0.19 16 6 C -0.16 -0.11 5.35 -19.85 -0.11 -0.22 16 7 C -0.07 0.09 2.80 71.24 0.20 0.29 16 8 O -0.55 -0.37 12.83 -148.98 -1.91 -2.28 16 9 Si 0.98 -1.69 25.13 68.60 1.72 0.03 16 10 H -0.26 0.24 7.11 99.48 0.71 0.95 16 11 H -0.28 -0.59 7.11 99.48 0.71 0.12 16 12 H -0.25 0.51 7.04 99.48 0.70 1.21 16 13 C -0.04 -0.08 9.33 22.26 0.21 0.13 16 14 C -0.12 -0.41 5.15 -19.77 -0.10 -0.51 16 15 C -0.02 -0.05 5.85 71.24 0.42 0.37 16 16 S -0.27 -1.12 21.72 -56.49 -1.23 -2.35 16 17 C -0.09 -0.12 6.31 71.98 0.45 0.33 16 18 C 0.10 0.09 5.13 71.98 0.37 0.46 16 19 O -0.64 -1.09 8.56 -148.98 -1.28 -2.36 16 20 Si 1.31 -1.55 8.45 68.60 0.58 -0.97 16 21 C -0.52 0.28 8.50 113.37 0.96 1.24 16 22 C -0.52 0.28 8.50 113.37 0.96 1.25 16 23 C -0.38 -0.02 0.53 -10.79 -0.01 -0.02 16 24 C -0.14 -0.12 7.85 71.98 0.56 0.44 16 25 C -0.14 0.13 7.85 71.98 0.56 0.70 16 26 C -0.14 -0.12 7.85 71.98 0.56 0.44 16 27 H 0.07 -0.42 7.66 -2.39 -0.02 -0.44 16 28 H 0.06 -0.35 7.66 -2.39 -0.02 -0.37 16 29 H 0.11 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.15 -0.59 6.30 -2.91 -0.02 -0.61 16 31 H 0.14 -0.43 4.86 -2.91 -0.01 -0.45 16 32 H 0.12 -0.36 7.96 -2.39 -0.02 -0.38 16 33 H 0.39 -2.01 8.70 -74.06 -0.64 -2.66 16 34 H 0.14 0.09 8.06 -2.91 -0.02 0.06 16 35 H 0.10 -0.08 8.09 -2.39 -0.02 -0.10 16 36 H 0.09 0.22 7.53 -2.39 -0.02 0.20 16 37 H 0.10 0.03 8.14 -2.39 -0.02 0.02 16 38 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.07 -0.01 7.21 -2.38 -0.02 -0.03 16 40 H 0.07 -0.03 7.21 -2.39 -0.02 -0.05 16 41 H 0.07 -0.04 7.48 -2.39 -0.02 -0.06 16 42 H 0.08 -0.13 7.79 -2.39 -0.02 -0.15 16 43 H 0.07 0.00 7.79 -2.38 -0.02 -0.02 16 44 H 0.07 0.00 7.79 -2.39 -0.02 -0.02 16 45 H 0.08 -0.13 7.79 -2.39 -0.02 -0.14 16 46 H 0.07 -0.04 7.48 -2.39 -0.02 -0.06 16 47 H 0.06 -0.03 7.80 -2.39 -0.02 -0.05 16 48 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.06 0.08 7.97 -2.38 -0.02 0.07 16 50 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 51 H 0.05 0.00 8.14 -2.38 -0.02 -0.02 16 52 H 0.06 -0.15 7.79 -2.38 -0.02 -0.17 16 53 H 0.06 0.08 7.97 -2.39 -0.02 0.06 16 54 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 55 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 Total: 0.00 -11.50 445.97 4.67 -6.83 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: 0.95 Total: -3.90 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 6.71 Total: 6.84 kcal Atomic # 8 Polarization: -2.42 SS G_CDS: -4.07 Total: -6.49 kcal Atomic # 14 Polarization: -3.25 SS G_CDS: 2.30 Total: -0.94 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -1.23 Total: -2.35 kcal Total: -11.50 4.67 -6.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_18313520_759148.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.985 kcal (2) G-P(sol) polarization free energy of solvation -11.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds