Wall clock time and date at job start Mon Mar 8 2021 14:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47163 * 2 1 4 4 C 1.52994 * 109.47116 * 239.99654 * 2 1 3 5 5 O 1.42909 * 109.46770 * 119.99716 * 2 1 3 6 6 C 1.42897 * 113.99925 * 60.00174 * 5 2 1 7 7 H 1.09003 * 112.85019 * 18.80149 * 6 5 2 8 8 C 1.53778 * 113.61271 * 149.99636 * 6 5 2 9 9 C 1.53783 * 87.08066 * 140.06543 * 8 6 5 10 10 H 1.08995 * 113.61266 * 89.20301 * 9 8 6 11 11 C 1.53004 * 113.61498 * 220.01889 * 9 8 6 12 12 O 1.42895 * 109.46931 * 183.47201 * 11 9 8 13 13 C 1.35958 * 116.99674 * 175.16077 * 12 11 9 14 14 C 1.38866 * 120.05649 * 275.77461 * 13 12 11 15 15 F 1.35098 * 120.05204 * 0.02562 * 14 13 12 16 16 C 1.38443 * 119.89705 * 179.97438 * 14 13 12 17 17 Cl 1.73599 * 119.99894 * 180.02562 * 16 14 13 18 18 C 1.38369 * 120.00402 * 359.97438 * 16 14 13 19 19 C 1.38255 * 120.11026 * 359.78554 * 18 16 14 20 20 C 1.38174 * 120.10912 * 0.46323 * 19 18 16 21 21 C 1.50693 * 120.00892 * 179.79120 * 20 19 18 22 22 O 1.42904 * 109.47058 * 15.97170 * 21 20 19 23 23 Si 1.86307 * 109.47255 * 255.97625 * 21 20 19 24 24 C 1.53784 * 87.17038 * 334.61131 * 9 8 6 25 25 H 1.08998 * 109.46977 * 300.00049 * 1 2 3 26 26 H 1.08993 * 109.46948 * 60.00441 * 1 2 3 27 27 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47427 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46791 * 299.99871 * 3 2 1 30 30 H 1.08999 * 109.47341 * 59.99555 * 3 2 1 31 31 H 1.09001 * 109.47283 * 300.00152 * 4 2 1 32 32 H 1.09002 * 109.47113 * 59.99960 * 4 2 1 33 33 H 1.09000 * 109.46831 * 179.97438 * 4 2 1 34 34 H 1.09000 * 113.61466 * 25.51711 * 8 6 5 35 35 H 1.09000 * 113.61863 * 254.61270 * 8 6 5 36 36 H 1.09003 * 109.46727 * 63.46699 * 11 9 8 37 37 H 1.09000 * 109.47122 * 303.47244 * 11 9 8 38 38 H 1.08001 * 119.94284 * 180.02562 * 18 16 14 39 39 H 1.08002 * 119.94827 * 180.25757 * 19 18 16 40 40 H 1.08998 * 109.47743 * 135.97430 * 21 20 19 41 41 H 0.96702 * 113.99631 * 56.62433 * 22 21 20 42 42 H 1.48498 * 109.99854 * 299.99572 * 23 21 20 43 43 H 1.48502 * 109.99908 * 61.31371 * 23 21 20 44 44 H 1.08997 * 113.61316 * 139.94436 * 24 9 8 45 45 H 1.09002 * 113.61195 * 270.83654 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1669 6 6 1.5847 -2.0355 1.2646 7 1 1.2523 -2.4452 0.3108 8 6 2.5837 -2.9378 2.0080 9 6 1.3666 -3.6134 2.6616 10 1 0.9755 -4.4553 2.0905 11 6 1.5700 -3.9429 4.1418 12 8 0.4233 -4.6368 4.6372 13 6 0.4835 -5.0941 5.9162 14 6 1.0825 -6.3166 6.1902 15 9 1.6068 -7.0532 5.1863 16 6 1.1424 -6.7789 7.4938 17 17 1.8912 -8.3065 7.8394 18 6 0.6065 -6.0230 8.5213 19 6 0.0145 -4.8035 8.2494 20 6 -0.0524 -4.3400 6.9495 21 6 -0.7024 -3.0127 6.6551 22 8 -0.8313 -2.2663 7.8669 23 14 -2.3899 -3.2973 5.9187 24 6 0.6045 -2.2993 2.4220 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2493 34 1 3.2161 -2.3999 2.7143 35 1 3.1487 -3.5983 1.3503 36 1 1.7069 -3.0192 4.7042 37 1 2.4528 -4.5719 4.2561 38 1 0.6542 -6.3844 9.5380 39 1 -0.3992 -4.2137 9.0540 40 1 -0.0871 -2.4554 5.9488 41 1 0.0044 -2.1252 8.3327 42 1 -2.2696 -4.0725 4.6578 43 1 -3.2489 -4.0285 6.8845 44 1 -0.4260 -2.4451 2.0982 45 1 0.6947 -1.5866 3.2418 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_18323484_14598384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:14:19 Heat of formation + Delta-G solvation = -112.936719 kcal Electronic energy + Delta-G solvation = -28840.721321 eV Core-core repulsion = 24573.810060 eV Total energy + Delta-G solvation = -4266.911262 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.28624 -41.58682 -40.82097 -39.19675 -38.18636 -37.97509 -37.16758 -33.89935 -32.41124 -31.51584 -29.33189 -28.33250 -28.22948 -27.10281 -26.60430 -24.25028 -23.50731 -23.02608 -20.85706 -20.66056 -19.58612 -18.81368 -18.56595 -17.88670 -17.71134 -17.34906 -16.70906 -16.63401 -16.37061 -16.24098 -15.94229 -15.83196 -15.51833 -15.04341 -14.65361 -14.49791 -14.23239 -14.19898 -14.08996 -13.61544 -13.52822 -13.41222 -13.27435 -13.16376 -12.95384 -12.77210 -12.71708 -12.61961 -12.38784 -12.33450 -12.27565 -12.11186 -11.86196 -11.69383 -11.53811 -11.31182 -11.23158 -11.05820 -10.34336 -10.04316 -9.82850 -4.95169 -0.51816 -0.40495 0.69708 1.29168 1.67253 1.88346 1.93410 2.30879 2.64103 2.77695 3.26848 3.36613 3.44539 3.54258 3.65499 3.76015 3.77977 3.87709 3.93052 3.97770 4.01597 4.10341 4.12724 4.14752 4.24117 4.33666 4.47526 4.52220 4.53501 4.64061 4.70803 4.73961 4.77323 4.78770 4.81725 4.86589 4.93195 4.93671 4.97010 5.02655 5.13199 5.15778 5.22597 5.33045 5.36265 5.40295 6.06329 6.43007 6.62954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 C -0.139 4.139 4 C -0.178 4.178 5 O -0.377 6.377 6 C 0.061 3.939 7 H 0.097 0.903 8 C -0.123 4.123 9 C -0.107 4.107 10 H 0.099 0.901 11 C 0.074 3.926 12 O -0.331 6.331 13 C 0.067 3.933 14 C 0.067 3.933 15 F -0.131 7.131 16 C -0.076 4.076 17 Cl -0.045 7.045 18 C -0.077 4.077 19 C -0.089 4.089 20 C -0.110 4.110 21 C -0.066 4.066 22 O -0.538 6.538 23 Si 0.812 3.188 24 C -0.144 4.144 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.097 0.903 41 H 0.385 0.615 42 H -0.272 1.272 43 H -0.296 1.296 44 H 0.076 0.924 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 5.312 0.123 5.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.060 3.940 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.297 6.297 6 C 0.003 3.997 7 H 0.115 0.885 8 C -0.161 4.161 9 C -0.126 4.126 10 H 0.117 0.883 11 C 0.001 3.999 12 O -0.248 6.248 13 C 0.022 3.978 14 C 0.047 3.953 15 F -0.109 7.109 16 C -0.103 4.103 17 Cl -0.016 7.016 18 C -0.095 4.095 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.174 4.174 22 O -0.346 6.346 23 Si 0.713 3.287 24 C -0.182 4.182 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.193 0.807 39 H 0.197 0.803 40 H 0.114 0.886 41 H 0.235 0.765 42 H -0.198 1.198 43 H -0.223 1.223 44 H 0.095 0.905 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.408 4.654 -0.310 4.872 hybrid contribution 1.816 -1.635 0.170 2.449 sum 0.408 3.019 -0.140 3.050 Atomic orbital electron populations 1.22446 0.94798 1.02697 1.03205 1.21670 0.93814 0.93347 0.85169 1.21789 1.01589 0.93186 1.03060 1.22463 1.01875 1.01081 0.98138 1.88007 1.74214 1.23875 1.43628 1.23642 0.95666 0.82400 0.97952 0.88512 1.23205 0.96232 0.97211 0.99442 1.22274 0.98937 0.98137 0.93212 0.88309 1.22991 0.86236 0.95830 0.94870 1.86117 1.40785 1.74120 1.23787 1.18363 1.01419 0.91823 0.86239 1.18054 1.00744 0.92109 0.84414 1.91513 1.84255 1.75913 1.59260 1.21165 1.04408 0.91789 0.92988 1.98414 1.80342 1.27922 1.94929 1.21417 0.95177 0.93292 0.99596 1.21308 0.97668 0.95410 0.96337 1.20908 0.98198 0.99005 0.92983 1.25108 1.12311 0.88201 0.91825 1.86725 1.37423 1.74181 1.36226 0.93131 0.72680 0.86299 0.76562 1.23635 0.99156 0.95850 0.99553 0.91875 0.90734 0.92185 0.92419 0.89870 0.92080 0.92029 0.90492 0.92292 0.88975 0.90013 0.90621 0.92750 0.80698 0.80258 0.88552 0.76501 1.19835 1.22343 0.90545 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.40 8.38 71.98 0.60 1.00 16 2 C 0.10 -0.05 1.11 -10.80 -0.01 -0.06 16 3 C -0.14 0.18 8.84 71.98 0.64 0.82 16 4 C -0.18 0.33 8.38 71.98 0.60 0.93 16 5 O -0.38 -0.94 10.00 -148.98 -1.49 -2.43 16 6 C 0.06 -0.04 2.82 31.18 0.09 0.05 16 7 H 0.10 -0.19 5.54 -2.39 -0.01 -0.20 16 8 C -0.12 0.16 7.47 31.12 0.23 0.39 16 9 C -0.11 0.06 4.00 -10.26 -0.04 0.02 16 10 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 11 C 0.07 0.07 5.79 71.98 0.42 0.48 16 12 O -0.33 -1.84 8.50 -93.07 -0.79 -2.63 16 13 C 0.07 0.35 5.37 22.53 0.12 0.47 16 14 C 0.07 0.49 7.28 22.47 0.16 0.65 16 15 F -0.13 -1.39 16.68 44.97 0.75 -0.64 16 16 C -0.08 -0.32 6.32 22.35 0.14 -0.18 16 17 Cl -0.05 -0.22 28.61 -2.72 -0.08 -0.30 16 18 C -0.08 0.09 9.83 22.30 0.22 0.31 16 19 C -0.09 0.21 9.19 22.26 0.20 0.41 16 20 C -0.11 -0.11 4.46 -19.77 -0.09 -0.20 16 21 C -0.07 0.12 2.49 71.23 0.18 0.29 16 22 O -0.54 2.23 11.51 -148.98 -1.71 0.51 16 23 Si 0.81 0.85 32.40 68.60 2.22 3.07 16 24 C -0.14 0.20 7.48 31.18 0.23 0.43 16 25 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.06 -0.15 7.02 -2.39 -0.02 -0.16 16 28 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.06 -0.14 6.24 -2.39 -0.01 -0.16 16 32 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.09 -0.09 8.10 -2.39 -0.02 -0.10 16 35 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.08 -0.16 7.34 -2.39 -0.02 -0.18 16 37 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.18 -1.12 8.06 -2.91 -0.02 -1.15 16 39 H 0.18 -1.35 7.06 -2.91 -0.02 -1.37 16 40 H 0.10 -0.40 7.16 -2.39 -0.02 -0.42 16 41 H 0.38 -4.23 8.67 -74.06 -0.64 -4.87 16 42 H -0.27 -1.86 7.11 99.48 0.71 -1.15 16 43 H -0.30 -2.24 7.11 99.48 0.71 -1.53 16 44 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.09 -0.16 7.92 -2.39 -0.02 -0.18 16 Total: 0.00 -12.47 383.84 2.99 -9.48 By element: Atomic # 1 Polarization: -13.31 SS G_CDS: 0.40 Total: -12.91 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 3.70 Total: 5.85 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -4.00 Total: -4.55 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.75 Total: -0.64 kcal Atomic # 14 Polarization: 0.85 SS G_CDS: 2.22 Total: 3.07 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -12.47 2.99 -9.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_18323484_14598384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.460 kcal (2) G-P(sol) polarization free energy of solvation -12.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds