Wall clock time and date at job start Mon Mar 8 2021 14:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86300 * 109.47054 * 2 1 4 4 C 1.50707 * 109.46803 * 119.99760 * 2 1 3 5 5 C 1.38648 * 119.95843 * 74.98284 * 4 2 1 6 6 O 1.35983 * 119.98800 * 359.97438 * 5 4 2 7 7 C 1.42893 * 117.00232 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47334 * 180.02562 * 7 6 5 9 9 H 1.08997 * 112.84447 * 316.19742 * 8 7 6 10 10 C 1.53776 * 113.61237 * 87.50385 * 8 7 6 11 11 C 1.53779 * 87.08041 * 139.98519 * 10 8 7 12 12 H 1.08998 * 113.61979 * 89.11240 * 11 10 8 13 13 O 1.42907 * 113.68869 * 220.00807 * 11 10 8 14 14 C 1.53774 * 113.61363 * 185.00211 * 8 7 6 15 15 C 1.38699 * 120.02748 * 180.02562 * 5 4 2 16 16 C 1.38485 * 119.99095 * 0.02562 * 15 5 4 17 17 O 1.36499 * 131.48187 * 180.02562 * 16 15 5 18 18 C 1.43985 * 105.50352 * 197.26827 * 17 16 15 19 19 O 1.43975 * 103.74444 * 332.84766 * 18 17 16 20 20 C 1.36603 * 105.47604 * 27.14433 * 19 18 17 21 21 C 1.38261 * 119.95514 * 254.99845 * 4 2 1 22 22 H 0.96704 * 113.99666 * 60.00242 * 1 2 3 23 23 H 1.08992 * 109.47854 * 239.99725 * 2 1 3 24 24 H 1.48505 * 110.00129 * 59.99649 * 3 2 1 25 25 H 1.48500 * 109.99932 * 181.31421 * 3 2 1 26 26 H 1.08998 * 109.47457 * 300.00561 * 7 6 5 27 27 H 1.09007 * 109.46814 * 60.00190 * 7 6 5 28 28 H 1.09005 * 113.61446 * 254.53039 * 10 8 7 29 29 H 1.09005 * 113.61735 * 25.43380 * 10 8 7 30 30 H 0.96693 * 113.99690 * 277.53107 * 13 11 10 31 31 H 1.09001 * 113.61960 * 334.56292 * 14 8 7 32 32 H 1.09005 * 113.61924 * 105.38847 * 14 8 7 33 33 H 1.08002 * 120.00433 * 180.02562 * 15 5 4 34 34 H 1.09001 * 110.56743 * 91.41405 * 18 17 16 35 35 H 1.08993 * 110.56872 * 214.13343 * 18 17 16 36 36 H 1.08000 * 119.95375 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.8685 -2.0934 1.3057 6 8 1.3535 -2.8077 0.2695 7 6 1.3201 -4.2289 0.4144 8 6 0.7128 -4.8556 -0.8424 9 1 -0.1720 -4.3253 -1.1944 10 6 1.7430 -5.1408 -1.9478 11 6 0.9897 -6.4573 -2.2013 12 1 0.1810 -6.3651 -2.9262 13 8 1.8485 -7.5684 -2.4661 14 6 0.5187 -6.3776 -0.7395 15 6 2.3299 -2.7487 2.4377 16 6 2.8529 -2.0213 3.4937 17 8 3.3646 -2.4141 4.6966 18 6 3.3625 -1.2330 5.5201 19 8 3.4652 -0.1546 4.5716 20 6 2.9144 -0.6317 3.4162 21 6 2.4537 0.0179 2.2833 22 1 -0.3933 0.4417 -0.7651 23 1 1.7924 -0.5138 -0.8899 24 1 1.5613 2.4680 1.2085 25 1 3.5345 1.7703 -0.0320 26 1 2.3341 -4.6039 0.5534 27 1 0.7136 -4.4916 1.2812 28 1 1.6929 -4.4414 -2.7824 29 1 2.7570 -5.2829 -1.5737 30 1 2.1481 -7.6238 -3.3838 31 1 1.1978 -6.8578 -0.0351 32 1 -0.5198 -6.6767 -0.5971 33 1 2.2812 -3.8260 2.4957 34 1 2.4321 -1.1604 6.0833 35 1 4.2183 -1.2352 6.1950 36 1 2.5016 1.0952 2.2224 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_1880786_11354858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:21:49 Heat of formation + Delta-G solvation = -113.828788 kcal Electronic energy + Delta-G solvation = -22242.213037 eV Core-core repulsion = 18661.076811 eV Total energy + Delta-G solvation = -3581.136225 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.23204 -41.20171 -40.16173 -38.24542 -37.28294 -37.02204 -36.01869 -32.42647 -30.94156 -29.21659 -27.41296 -26.83659 -25.90073 -24.56775 -23.19897 -22.68807 -20.73661 -19.73187 -18.94359 -18.65506 -18.44738 -18.28047 -17.87327 -16.98952 -16.74817 -16.36015 -16.10153 -15.99263 -15.38771 -15.28517 -15.06758 -14.58269 -14.50158 -14.12227 -13.99315 -13.74744 -13.54666 -13.50117 -13.08757 -12.74837 -12.67510 -12.47455 -11.97477 -11.91611 -11.87631 -11.41951 -11.15574 -10.82965 -10.23693 -9.95468 -8.79716 -4.98096 -0.07666 0.12592 1.28983 1.58307 1.67208 1.97741 2.02003 2.34891 2.40482 3.15296 3.32197 3.35951 3.44694 3.46160 3.61603 3.69533 3.79109 3.82637 3.88143 3.96444 4.03482 4.10648 4.16763 4.23961 4.29683 4.37722 4.55904 4.63590 4.67560 4.68879 4.86686 4.88480 4.91492 5.00883 5.05325 5.19987 5.27984 5.92127 6.26700 6.63670 6.70126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.052 4.052 3 Si 0.680 3.320 4 C -0.103 4.103 5 C 0.174 3.826 6 O -0.290 6.290 7 C 0.066 3.934 8 C -0.107 4.107 9 H 0.108 0.892 10 C -0.164 4.164 11 C 0.076 3.924 12 H 0.085 0.915 13 O -0.560 6.560 14 C -0.121 4.121 15 C -0.193 4.193 16 C 0.084 3.916 17 O -0.305 6.305 18 C 0.213 3.787 19 O -0.306 6.306 20 C -0.002 4.002 21 C -0.064 4.064 22 H 0.381 0.619 23 H 0.078 0.922 24 H -0.249 1.249 25 H -0.253 1.253 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.380 0.620 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 0.364 -3.674 4.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.163 4.163 3 Si 0.581 3.419 4 C -0.104 4.104 5 C 0.127 3.873 6 O -0.203 6.203 7 C -0.009 4.009 8 C -0.126 4.126 9 H 0.126 0.874 10 C -0.201 4.201 11 C 0.017 3.983 12 H 0.103 0.897 13 O -0.366 6.366 14 C -0.158 4.158 15 C -0.212 4.212 16 C 0.039 3.961 17 O -0.220 6.220 18 C 0.102 3.898 19 O -0.223 6.223 20 C -0.046 4.046 21 C -0.082 4.082 22 H 0.228 0.772 23 H 0.096 0.904 24 H -0.174 1.174 25 H -0.177 1.177 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.228 0.772 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.164 0.836 34 H 0.105 0.895 35 H 0.153 0.847 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.065 0.585 -2.092 2.419 hybrid contribution 0.298 -0.603 0.169 0.693 sum -0.767 -0.018 -1.923 2.070 Atomic orbital electron populations 1.86513 1.17006 1.81828 1.49405 1.24370 0.85909 1.09554 0.96474 0.95374 0.81161 0.78178 0.87178 1.18258 1.05647 0.90231 0.96233 1.18127 0.92638 0.90267 0.86255 1.86185 1.76877 1.19648 1.37600 1.22931 1.01079 0.77967 0.98972 1.22311 1.00153 0.95447 0.94658 0.87374 1.23782 0.99257 0.97957 0.99132 1.23286 0.92590 0.85446 0.96956 0.89690 1.86526 1.67751 1.48575 1.33737 1.23075 1.02589 0.93818 0.96350 1.20055 1.07308 1.01004 0.92829 1.19428 0.96702 0.91464 0.88507 1.87389 1.78787 1.34241 1.21621 1.25703 1.04574 0.70480 0.89075 1.87402 1.77057 1.38027 1.19787 1.19419 1.03234 0.91072 0.90921 1.19633 0.98603 0.99713 0.90247 0.77191 0.90406 1.17416 1.17732 0.91450 0.91338 0.90668 0.89097 0.77186 0.88833 0.90045 0.83648 0.89460 0.84668 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.47 12.86 -35.23 -0.45 -0.92 16 2 C -0.05 -0.04 2.36 36.01 0.09 0.04 16 3 Si 0.68 -0.35 30.19 -169.99 -5.13 -5.48 16 4 C -0.10 -0.35 5.31 -104.46 -0.55 -0.90 16 5 C 0.17 0.56 6.66 -39.26 -0.26 0.29 16 6 O -0.29 -0.62 9.46 -19.69 -0.19 -0.81 16 7 C 0.07 -0.01 4.58 37.16 0.17 0.16 16 8 C -0.11 0.12 4.01 -89.81 -0.36 -0.24 16 9 H 0.11 -0.13 8.14 -51.93 -0.42 -0.56 16 10 C -0.16 0.18 7.46 -25.92 -0.19 -0.01 16 11 C 0.08 -0.08 5.21 -25.92 -0.14 -0.21 16 12 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 13 O -0.56 -0.21 13.67 -35.23 -0.48 -0.70 16 14 C -0.12 0.13 7.47 -25.92 -0.19 -0.07 16 15 C -0.19 -0.56 9.05 -39.32 -0.36 -0.91 16 16 C 0.08 0.35 7.15 -39.09 -0.28 0.07 16 17 O -0.30 -1.06 11.40 -45.69 -0.52 -1.58 16 18 C 0.21 0.18 8.89 101.05 0.90 1.08 16 19 O -0.31 -1.24 11.41 -46.03 -0.53 -1.77 16 20 C 0.00 -0.01 7.15 -39.09 -0.28 -0.29 16 21 C -0.06 -0.26 8.67 -39.48 -0.34 -0.60 16 22 H 0.38 -1.62 8.74 45.56 0.40 -1.22 16 23 H 0.08 -0.02 7.82 -51.93 -0.41 -0.43 16 24 H -0.25 -0.57 6.75 56.52 0.38 -0.19 16 25 H -0.25 -0.54 7.11 56.52 0.40 -0.13 16 26 H 0.07 -0.05 7.36 -51.93 -0.38 -0.43 16 27 H 0.07 -0.06 7.66 -51.92 -0.40 -0.45 16 28 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 29 H 0.09 -0.03 7.90 -51.93 -0.41 -0.44 16 30 H 0.38 -1.37 9.12 45.56 0.42 -0.95 16 31 H 0.09 -0.05 8.10 -51.93 -0.42 -0.47 16 32 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 33 H 0.15 0.13 6.29 -52.49 -0.33 -0.20 16 34 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 35 H 0.14 -0.30 8.14 -51.93 -0.42 -0.72 16 36 H 0.14 0.46 4.89 -52.49 -0.26 0.21 16 LS Contribution 303.52 15.07 4.57 4.57 Total: 0.00 -8.45 303.52 -8.07 -16.52 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: -3.54 Total: -8.23 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.80 Total: -1.60 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -2.17 Total: -5.78 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: -5.13 Total: -5.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -8.45 -8.07 -16.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_11354858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.310 kcal (2) G-P(sol) polarization free energy of solvation -8.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds