Wall clock time and date at job start Mon Mar 8 2021 14:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86300 * 109.47054 * 2 1 4 4 C 1.50707 * 109.46803 * 119.99760 * 2 1 3 5 5 C 1.38648 * 119.95843 * 74.98284 * 4 2 1 6 6 O 1.35983 * 119.98800 * 359.97438 * 5 4 2 7 7 C 1.42893 * 117.00232 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47334 * 180.02562 * 7 6 5 9 9 H 1.08997 * 112.84447 * 316.19742 * 8 7 6 10 10 C 1.53776 * 113.61237 * 87.50385 * 8 7 6 11 11 C 1.53779 * 87.08041 * 139.98519 * 10 8 7 12 12 H 1.08998 * 113.61979 * 89.11240 * 11 10 8 13 13 O 1.42907 * 113.68869 * 220.00807 * 11 10 8 14 14 C 1.53774 * 113.61363 * 185.00211 * 8 7 6 15 15 C 1.38699 * 120.02748 * 180.02562 * 5 4 2 16 16 C 1.38485 * 119.99095 * 0.02562 * 15 5 4 17 17 O 1.36499 * 131.48187 * 180.02562 * 16 15 5 18 18 C 1.43985 * 105.50352 * 197.26827 * 17 16 15 19 19 O 1.43975 * 103.74444 * 332.84766 * 18 17 16 20 20 C 1.36603 * 105.47604 * 27.14433 * 19 18 17 21 21 C 1.38261 * 119.95514 * 254.99845 * 4 2 1 22 22 H 0.96704 * 113.99666 * 60.00242 * 1 2 3 23 23 H 1.08992 * 109.47854 * 239.99725 * 2 1 3 24 24 H 1.48505 * 110.00129 * 59.99649 * 3 2 1 25 25 H 1.48500 * 109.99932 * 181.31421 * 3 2 1 26 26 H 1.08998 * 109.47457 * 300.00561 * 7 6 5 27 27 H 1.09007 * 109.46814 * 60.00190 * 7 6 5 28 28 H 1.09005 * 113.61446 * 254.53039 * 10 8 7 29 29 H 1.09005 * 113.61735 * 25.43380 * 10 8 7 30 30 H 0.96693 * 113.99690 * 277.53107 * 13 11 10 31 31 H 1.09001 * 113.61960 * 334.56292 * 14 8 7 32 32 H 1.09005 * 113.61924 * 105.38847 * 14 8 7 33 33 H 1.08002 * 120.00433 * 180.02562 * 15 5 4 34 34 H 1.09001 * 110.56743 * 91.41405 * 18 17 16 35 35 H 1.08993 * 110.56872 * 214.13343 * 18 17 16 36 36 H 1.08000 * 119.95375 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.8685 -2.0934 1.3057 6 8 1.3535 -2.8077 0.2695 7 6 1.3201 -4.2289 0.4144 8 6 0.7128 -4.8556 -0.8424 9 1 -0.1720 -4.3253 -1.1944 10 6 1.7430 -5.1408 -1.9478 11 6 0.9897 -6.4573 -2.2013 12 1 0.1810 -6.3651 -2.9262 13 8 1.8485 -7.5684 -2.4661 14 6 0.5187 -6.3776 -0.7395 15 6 2.3299 -2.7487 2.4377 16 6 2.8529 -2.0213 3.4937 17 8 3.3646 -2.4141 4.6966 18 6 3.3625 -1.2330 5.5201 19 8 3.4652 -0.1546 4.5716 20 6 2.9144 -0.6317 3.4162 21 6 2.4537 0.0179 2.2833 22 1 -0.3933 0.4417 -0.7651 23 1 1.7924 -0.5138 -0.8899 24 1 1.5613 2.4680 1.2085 25 1 3.5345 1.7703 -0.0320 26 1 2.3341 -4.6039 0.5534 27 1 0.7136 -4.4916 1.2812 28 1 1.6929 -4.4414 -2.7824 29 1 2.7570 -5.2829 -1.5737 30 1 2.1481 -7.6238 -3.3838 31 1 1.1978 -6.8578 -0.0351 32 1 -0.5198 -6.6767 -0.5971 33 1 2.2812 -3.8260 2.4957 34 1 2.4321 -1.1604 6.0833 35 1 4.2183 -1.2352 6.1950 36 1 2.5016 1.0952 2.2224 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_1880786_11354858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:21:49 Heat of formation + Delta-G solvation = -116.512703 kcal Electronic energy + Delta-G solvation = -22242.329420 eV Core-core repulsion = 18661.076811 eV Total energy + Delta-G solvation = -3581.252609 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.41588 -41.28103 -40.14094 -38.33126 -37.48745 -37.10172 -35.98268 -32.59370 -31.09124 -29.23665 -27.50019 -26.73465 -26.03563 -24.66600 -23.32657 -22.77074 -20.67940 -19.85621 -19.05519 -18.80611 -18.46177 -18.29499 -17.99248 -17.04200 -16.82694 -16.33658 -16.23166 -16.05659 -15.51880 -15.43023 -15.09891 -14.67136 -14.56293 -14.24152 -14.17597 -13.84729 -13.58500 -13.46004 -13.21581 -12.76383 -12.61993 -12.44801 -12.10606 -11.98498 -11.83713 -11.42653 -11.16308 -10.73831 -10.25943 -10.16235 -9.00668 -4.97716 -0.30266 -0.11384 1.27845 1.44353 1.63986 1.92434 1.95261 2.15707 2.27340 3.09262 3.29528 3.38801 3.43893 3.53684 3.58203 3.68104 3.78486 3.82675 3.91873 3.94622 3.97270 4.12555 4.17593 4.21019 4.26063 4.38673 4.47726 4.66140 4.69332 4.73344 4.76140 4.80661 4.87334 4.98191 5.01371 5.13513 5.38100 5.73788 6.13298 6.88038 6.95776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.060 4.060 3 Si 0.776 3.224 4 C -0.117 4.117 5 C 0.169 3.831 6 O -0.294 6.294 7 C 0.060 3.940 8 C -0.101 4.101 9 H 0.113 0.887 10 C -0.162 4.162 11 C 0.074 3.926 12 H 0.101 0.899 13 O -0.583 6.583 14 C -0.123 4.123 15 C -0.193 4.193 16 C 0.072 3.928 17 O -0.317 6.317 18 C 0.204 3.796 19 O -0.324 6.324 20 C -0.020 4.020 21 C -0.079 4.079 22 H 0.402 0.598 23 H 0.092 0.908 24 H -0.290 1.290 25 H -0.291 1.291 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.395 0.605 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.106 0.894 35 H 0.165 0.835 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 0.021 -4.352 4.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.170 4.170 3 Si 0.682 3.318 4 C -0.118 4.118 5 C 0.122 3.878 6 O -0.207 6.207 7 C -0.015 4.015 8 C -0.119 4.119 9 H 0.131 0.869 10 C -0.200 4.200 11 C 0.015 3.985 12 H 0.118 0.882 13 O -0.391 6.391 14 C -0.161 4.161 15 C -0.213 4.213 16 C 0.026 3.974 17 O -0.233 6.233 18 C 0.094 3.906 19 O -0.242 6.242 20 C -0.064 4.064 21 C -0.097 4.097 22 H 0.254 0.746 23 H 0.110 0.890 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.245 0.755 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.180 0.820 34 H 0.124 0.876 35 H 0.183 0.817 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.666 0.228 -2.808 3.273 hybrid contribution 0.483 -0.521 0.411 0.821 sum -1.183 -0.294 -2.396 2.689 Atomic orbital electron populations 1.86457 1.16807 1.82443 1.51124 1.24539 0.86223 1.10385 0.95813 0.94419 0.77457 0.75358 0.84582 1.18647 1.05388 0.90797 0.96946 1.18237 0.92558 0.90448 0.86551 1.86176 1.76606 1.20699 1.37227 1.23111 1.01607 0.76885 0.99852 1.22272 1.00185 0.95310 0.94148 0.86919 1.23745 0.98731 0.98188 0.99292 1.23405 0.92801 0.84999 0.97249 0.88168 1.86481 1.68155 1.49138 1.35339 1.23096 1.02891 0.93703 0.96389 1.20279 1.06682 1.01856 0.92438 1.19612 0.97218 0.91458 0.89067 1.87353 1.78856 1.35406 1.21650 1.26183 1.07017 0.68961 0.88433 1.87358 1.77214 1.39411 1.20179 1.19643 1.03813 0.91630 0.91340 1.19787 0.99317 0.99870 0.90709 0.74638 0.89045 1.21792 1.21778 0.91099 0.90685 0.90064 0.90075 0.75478 0.89628 0.89267 0.82023 0.87599 0.81742 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.67 12.86 -148.98 -1.92 -2.59 16 2 C -0.06 -0.10 2.36 71.24 0.17 0.07 16 3 Si 0.78 -0.48 30.19 68.60 2.07 1.59 16 4 C -0.12 -0.89 5.31 -19.76 -0.10 -1.00 16 5 C 0.17 1.16 6.66 22.48 0.15 1.31 16 6 O -0.29 -1.22 9.46 -93.35 -0.88 -2.11 16 7 C 0.06 -0.03 4.58 71.98 0.33 0.30 16 8 C -0.10 0.28 4.01 -10.27 -0.04 0.24 16 9 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 10 C -0.16 0.43 7.46 31.12 0.23 0.66 16 11 C 0.07 -0.19 5.21 31.12 0.16 -0.03 16 12 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 13 O -0.58 -0.30 13.67 -148.98 -2.04 -2.34 16 14 C -0.12 0.31 7.47 31.12 0.23 0.54 16 15 C -0.19 -1.24 9.05 22.44 0.20 -1.04 16 16 C 0.07 0.66 7.15 22.59 0.16 0.83 16 17 O -0.32 -2.39 11.40 -76.04 -0.87 -3.26 16 18 C 0.20 0.40 8.89 113.37 1.01 1.40 16 19 O -0.32 -3.04 11.41 -77.27 -0.88 -3.92 16 20 C -0.02 -0.22 7.15 22.59 0.16 -0.06 16 21 C -0.08 -0.76 8.67 22.33 0.19 -0.57 16 22 H 0.40 -3.89 8.74 -74.05 -0.65 -4.54 16 23 H 0.09 -0.12 7.82 -2.39 -0.02 -0.13 16 24 H -0.29 -1.74 6.75 99.48 0.67 -1.06 16 25 H -0.29 -1.58 7.11 99.48 0.71 -0.87 16 26 H 0.07 -0.09 7.36 -2.39 -0.02 -0.11 16 27 H 0.07 -0.14 7.66 -2.38 -0.02 -0.16 16 28 H 0.08 -0.31 8.14 -2.38 -0.02 -0.33 16 29 H 0.08 -0.04 7.90 -2.38 -0.02 -0.06 16 30 H 0.40 -2.95 9.12 -74.06 -0.68 -3.62 16 31 H 0.09 -0.07 8.10 -2.39 -0.02 -0.09 16 32 H 0.09 -0.37 8.14 -2.38 -0.02 -0.39 16 33 H 0.16 0.32 6.29 -2.91 -0.02 0.30 16 34 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.17 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.14 1.21 4.89 -2.91 -0.01 1.19 16 Total: 0.00 -20.13 303.52 -1.84 -21.98 By element: Atomic # 1 Polarization: -11.83 SS G_CDS: -0.19 Total: -12.02 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 2.86 Total: 2.65 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -6.58 Total: -14.20 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: 2.07 Total: 1.59 kcal Total: -20.13 -1.84 -21.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_11354858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.535 kcal (2) G-P(sol) polarization free energy of solvation -20.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds