Wall clock time and date at job start Mon Mar 8 2021 14:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46829 * 2 1 4 4 C 1.52995 * 109.46994 * 240.00286 * 2 1 3 5 5 Si 1.86303 * 109.47123 * 119.99997 * 2 1 3 6 6 C 1.86305 * 109.46891 * 299.99971 * 5 2 1 7 7 C 1.86298 * 109.46915 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.46849 * 60.00020 * 5 2 1 9 9 C 1.42903 * 113.99510 * 180.02562 * 8 5 2 10 10 O 1.42898 * 109.46985 * 180.02562 * 9 8 5 11 11 C 1.35974 * 117.00113 * 74.99519 * 10 9 8 12 12 C 1.38652 * 119.98656 * 0.02562 * 11 10 9 13 13 C 1.38534 * 119.98783 * 179.97438 * 12 11 10 14 14 C 1.39257 * 119.88271 * 359.97438 * 13 12 11 15 15 C 1.38527 * 119.92020 * 0.04784 * 14 13 12 16 16 C 1.38218 * 120.09384 * 359.64632 * 15 14 13 17 17 C 1.50710 * 119.95670 * 180.30747 * 16 15 14 18 18 O 1.42901 * 109.47112 * 255.31147 * 17 16 15 19 19 Si 1.86299 * 109.46746 * 15.31208 * 17 16 15 20 20 H 1.48493 * 109.47378 * 59.99868 * 19 17 16 21 21 H 1.48504 * 109.46953 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47159 * 299.99677 * 19 17 16 23 23 O 1.36603 * 108.61749 * 180.02562 * 14 13 12 24 24 C 1.43988 * 105.47439 * 342.70529 * 23 14 13 25 25 O 1.36508 * 131.47153 * 180.02562 * 13 12 11 26 26 H 1.08996 * 109.47397 * 299.99899 * 1 2 3 27 27 H 1.09003 * 109.47056 * 60.00047 * 1 2 3 28 28 H 1.09003 * 109.47089 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47150 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47263 * 299.99825 * 3 2 1 31 31 H 1.08996 * 109.47049 * 59.99888 * 3 2 1 32 32 H 1.09006 * 109.47307 * 299.99691 * 4 2 1 33 33 H 1.08996 * 109.47658 * 59.99629 * 4 2 1 34 34 H 1.09007 * 109.47187 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.46470 * 179.97438 * 6 5 2 36 36 H 1.08994 * 109.47252 * 299.99820 * 6 5 2 37 37 H 1.09004 * 109.46885 * 60.00277 * 6 5 2 38 38 H 1.08996 * 109.46846 * 299.99992 * 7 5 2 39 39 H 1.08997 * 109.47212 * 60.00500 * 7 5 2 40 40 H 1.09003 * 109.46848 * 179.97438 * 7 5 2 41 41 H 1.09002 * 109.47382 * 60.00013 * 9 8 5 42 42 H 1.09001 * 109.46938 * 299.99999 * 9 8 5 43 43 H 1.07994 * 120.00410 * 0.02562 * 12 11 10 44 44 H 1.07994 * 119.95159 * 179.97438 * 15 14 13 45 45 H 1.09002 * 109.46664 * 135.31032 * 17 16 15 46 46 H 0.96697 * 114.00046 * 59.99894 * 18 17 16 47 47 H 1.08999 * 110.57378 * 268.57265 * 24 23 14 48 48 H 1.09002 * 110.57066 * 145.69440 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8775 1.5215 8 8 1.6073 -2.4160 1.5211 9 6 2.0286 -3.1813 2.6520 10 8 1.5011 -4.5058 2.5540 11 6 2.0902 -5.3400 1.6562 12 6 3.1534 -4.8916 0.8876 13 6 3.7540 -5.7417 -0.0267 14 6 3.2882 -7.0460 -0.1711 15 6 2.2253 -7.4894 0.5987 16 6 1.6318 -6.6414 1.5147 17 6 0.4801 -7.1292 2.3556 18 8 -0.7403 -6.5764 1.8586 19 14 0.3973 -8.9887 2.2764 20 1 1.6655 -9.5631 2.7928 21 1 -0.7371 -9.4694 3.1055 22 1 0.1977 -9.4157 0.8682 23 8 4.0388 -7.6741 -1.1241 24 6 4.6991 -6.6200 -1.8494 25 8 4.7959 -5.5524 -0.8881 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 1.8930 -0.5141 3.9322 36 1 1.8933 1.0277 3.0423 37 1 0.4400 0.0000 3.0422 38 1 4.3776 -1.3911 0.6315 39 1 4.3770 0.1502 1.5218 40 1 4.3773 -1.3910 2.4117 41 1 1.6637 -2.7112 3.5652 42 1 3.1174 -3.2251 2.6759 43 1 3.5138 -3.8800 1.0022 44 1 1.8634 -8.5007 0.4868 45 1 0.6267 -6.8157 3.3893 46 1 -0.9354 -6.8145 0.9419 47 1 4.1002 -6.3112 -2.7062 48 1 5.6913 -6.9384 -2.1691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_1880786_14468166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:19:02 Heat of formation + Delta-G solvation = -197.507683 kcal Electronic energy + Delta-G solvation = -29641.485637 eV Core-core repulsion = 25593.665003 eV Total energy + Delta-G solvation = -4047.820634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.19705 -41.09332 -38.80802 -37.26847 -37.15149 -36.90854 -36.59365 -32.24732 -30.67554 -29.61329 -29.20180 -27.93465 -27.47865 -27.46232 -27.11656 -25.83713 -23.66692 -23.01874 -20.55308 -19.92643 -19.22868 -18.72605 -18.46413 -18.14364 -17.20025 -16.99250 -16.65517 -16.15374 -15.97569 -15.89065 -15.44116 -15.24323 -15.07196 -14.94820 -14.90534 -14.78022 -14.52587 -14.19066 -13.99524 -13.92777 -13.77378 -13.56701 -13.52387 -13.37137 -13.21453 -13.00927 -12.99182 -12.77087 -12.46794 -12.19930 -12.10805 -12.06044 -11.83696 -11.70554 -11.65756 -11.59663 -11.32027 -10.56086 -10.31572 -10.17559 -9.88627 -8.79428 -0.02197 0.15295 1.15591 1.18662 1.44647 1.55433 1.56679 1.67607 1.88377 1.95251 2.06170 2.34251 2.43650 2.48122 3.37126 3.53897 3.61540 3.66349 3.78628 3.86764 3.92388 3.98677 4.05164 4.05527 4.11221 4.34360 4.39577 4.43547 4.52760 4.55993 4.59155 4.61578 4.69519 4.74838 4.80202 4.90939 4.94226 4.94359 4.98340 5.04723 5.05347 5.08414 5.16529 5.25267 5.27790 5.34641 5.42046 5.43921 5.50442 5.92542 6.23710 6.67411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.291 2.709 6 C -0.512 4.512 7 C -0.516 4.516 8 O -0.643 6.643 9 C 0.244 3.756 10 O -0.276 6.276 11 C 0.174 3.826 12 C -0.180 4.180 13 C 0.080 3.920 14 C 0.001 3.999 15 C -0.071 4.071 16 C -0.146 4.146 17 C -0.062 4.062 18 O -0.530 6.530 19 Si 0.943 3.057 20 H -0.247 1.247 21 H -0.250 1.250 22 H -0.251 1.251 23 O -0.306 6.306 24 C 0.213 3.787 25 O -0.306 6.306 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.063 0.937 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.374 0.626 47 H 0.087 0.913 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.212 1.288 -0.020 1.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.416 4.416 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.424 2.576 6 C -0.615 4.615 7 C -0.618 4.618 8 O -0.603 6.603 9 C 0.132 3.868 10 O -0.190 6.190 11 C 0.128 3.872 12 C -0.200 4.200 13 C 0.035 3.965 14 C -0.043 4.043 15 C -0.090 4.090 16 C -0.147 4.147 17 C -0.173 4.173 18 O -0.335 6.335 19 Si 0.766 3.234 20 H -0.171 1.171 21 H -0.173 1.173 22 H -0.175 1.175 23 O -0.223 6.223 24 C 0.101 3.899 25 O -0.222 6.222 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.081 0.919 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.139 0.861 46 H 0.220 0.780 47 H 0.105 0.895 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.047 0.338 0.466 1.195 hybrid contribution 0.776 0.966 -0.896 1.529 sum 1.823 1.304 -0.430 2.282 Atomic orbital electron populations 1.21520 0.93600 1.02183 1.01893 1.25743 1.00856 1.02591 1.12370 1.21564 1.00772 0.94814 1.02293 1.21517 1.00564 1.00256 0.96825 0.76586 0.62915 0.52453 0.65680 1.27027 1.07420 1.09737 1.17282 1.27082 1.24782 1.05324 1.04603 1.85334 1.79858 1.46540 1.48609 1.23496 0.96246 0.78658 0.88449 1.86394 1.57796 1.21148 1.53617 1.18113 0.90349 0.89413 0.89287 1.20059 0.98780 1.00696 1.00423 1.19442 0.88605 0.93521 0.94933 1.19484 0.96833 0.90762 0.97262 1.19774 0.93231 1.00640 0.95339 1.19322 1.01829 0.92064 1.01489 1.24767 0.82679 1.09904 0.99959 1.86576 1.37702 1.76358 1.32831 0.85826 0.81906 0.74302 0.81406 1.17058 1.17347 1.17484 1.87408 1.58620 1.30866 1.45379 1.25699 0.99954 0.74694 0.89507 1.87391 1.44636 1.50161 1.39965 0.92614 0.92695 0.92035 0.92498 0.92360 0.92433 0.92212 0.92660 0.92715 0.91361 0.90352 0.90461 0.90667 0.90167 0.91387 0.86939 0.91911 0.83772 0.83958 0.86064 0.77969 0.89519 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 7.85 37.16 0.29 0.30 16 2 C -0.37 0.25 0.53 -90.62 -0.05 0.20 16 3 C -0.14 0.15 7.85 37.16 0.29 0.44 16 4 C -0.13 0.01 7.85 37.15 0.29 0.30 16 5 Si 1.29 -2.27 8.45 -169.99 -1.44 -3.70 16 6 C -0.51 0.88 8.50 101.05 0.86 1.74 16 7 C -0.52 0.85 8.50 101.05 0.86 1.71 16 8 O -0.64 -0.06 8.03 -59.04 -0.47 -0.53 16 9 C 0.24 -0.18 5.42 101.05 0.55 0.36 16 10 O -0.28 -0.49 9.72 -43.47 -0.42 -0.91 16 11 C 0.17 0.37 6.60 -39.26 -0.26 0.11 16 12 C -0.18 -0.37 8.79 -39.32 -0.35 -0.72 16 13 C 0.08 0.23 7.15 -39.09 -0.28 -0.05 16 14 C 0.00 0.00 7.15 -39.10 -0.28 -0.28 16 15 C -0.07 -0.12 8.67 -39.48 -0.34 -0.46 16 16 C -0.15 -0.22 5.27 -104.45 -0.55 -0.77 16 17 C -0.06 -0.03 2.37 36.01 0.09 0.06 16 18 O -0.53 -0.64 12.88 -35.23 -0.45 -1.09 16 19 Si 0.94 -0.26 25.50 -169.99 -4.33 -4.59 16 20 H -0.25 -0.10 7.11 56.52 0.40 0.31 16 21 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 22 H -0.25 0.11 6.72 56.52 0.38 0.49 16 23 O -0.31 -0.81 11.41 -46.03 -0.53 -1.33 16 24 C 0.21 -0.03 8.89 101.05 0.90 0.87 16 25 O -0.31 -0.77 11.40 -45.71 -0.52 -1.29 16 26 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 29 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 30 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.06 -0.10 7.79 -51.93 -0.40 -0.51 16 32 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 33 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 35 H 0.07 -0.17 7.48 -51.93 -0.39 -0.56 16 36 H 0.08 -0.15 7.79 -51.93 -0.40 -0.56 16 37 H 0.08 -0.10 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 39 H 0.08 -0.15 7.79 -51.93 -0.40 -0.56 16 40 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 41 H 0.11 -0.37 7.21 -51.93 -0.37 -0.74 16 42 H 0.06 -0.17 5.77 -51.93 -0.30 -0.47 16 43 H 0.14 0.09 5.84 -52.49 -0.31 -0.22 16 44 H 0.14 0.02 4.88 -52.49 -0.26 -0.23 16 45 H 0.12 -0.02 7.82 -51.93 -0.41 -0.43 16 46 H 0.37 -0.77 8.70 45.56 0.40 -0.37 16 47 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 48 H 0.13 -0.40 8.14 -51.93 -0.42 -0.82 16 LS Contribution 383.86 15.07 5.78 5.78 Total: 0.00 -6.53 383.86 -7.38 -13.91 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: -7.02 Total: -10.08 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 2.02 Total: 3.84 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: -2.40 Total: -5.15 kcal Atomic # 14 Polarization: -2.52 SS G_CDS: -5.77 Total: -8.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -6.53 -7.38 -13.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_14468166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.599 kcal (2) G-P(sol) polarization free energy of solvation -6.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds