Wall clock time and date at job start Mon Mar 8 2021 14:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46829 * 2 1 4 4 C 1.52995 * 109.46994 * 240.00286 * 2 1 3 5 5 Si 1.86303 * 109.47123 * 119.99997 * 2 1 3 6 6 C 1.86305 * 109.46891 * 299.99971 * 5 2 1 7 7 C 1.86298 * 109.46915 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.46849 * 60.00020 * 5 2 1 9 9 C 1.42903 * 113.99510 * 180.02562 * 8 5 2 10 10 O 1.42898 * 109.46985 * 180.02562 * 9 8 5 11 11 C 1.35974 * 117.00113 * 74.99519 * 10 9 8 12 12 C 1.38652 * 119.98656 * 0.02562 * 11 10 9 13 13 C 1.38534 * 119.98783 * 179.97438 * 12 11 10 14 14 C 1.39257 * 119.88271 * 359.97438 * 13 12 11 15 15 C 1.38527 * 119.92020 * 0.04784 * 14 13 12 16 16 C 1.38218 * 120.09384 * 359.64632 * 15 14 13 17 17 C 1.50710 * 119.95670 * 180.30747 * 16 15 14 18 18 O 1.42901 * 109.47112 * 255.31147 * 17 16 15 19 19 Si 1.86299 * 109.46746 * 15.31208 * 17 16 15 20 20 H 1.48493 * 109.47378 * 59.99868 * 19 17 16 21 21 H 1.48504 * 109.46953 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47159 * 299.99677 * 19 17 16 23 23 O 1.36603 * 108.61749 * 180.02562 * 14 13 12 24 24 C 1.43988 * 105.47439 * 342.70529 * 23 14 13 25 25 O 1.36508 * 131.47153 * 180.02562 * 13 12 11 26 26 H 1.08996 * 109.47397 * 299.99899 * 1 2 3 27 27 H 1.09003 * 109.47056 * 60.00047 * 1 2 3 28 28 H 1.09003 * 109.47089 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47150 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47263 * 299.99825 * 3 2 1 31 31 H 1.08996 * 109.47049 * 59.99888 * 3 2 1 32 32 H 1.09006 * 109.47307 * 299.99691 * 4 2 1 33 33 H 1.08996 * 109.47658 * 59.99629 * 4 2 1 34 34 H 1.09007 * 109.47187 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.46470 * 179.97438 * 6 5 2 36 36 H 1.08994 * 109.47252 * 299.99820 * 6 5 2 37 37 H 1.09004 * 109.46885 * 60.00277 * 6 5 2 38 38 H 1.08996 * 109.46846 * 299.99992 * 7 5 2 39 39 H 1.08997 * 109.47212 * 60.00500 * 7 5 2 40 40 H 1.09003 * 109.46848 * 179.97438 * 7 5 2 41 41 H 1.09002 * 109.47382 * 60.00013 * 9 8 5 42 42 H 1.09001 * 109.46938 * 299.99999 * 9 8 5 43 43 H 1.07994 * 120.00410 * 0.02562 * 12 11 10 44 44 H 1.07994 * 119.95159 * 179.97438 * 15 14 13 45 45 H 1.09002 * 109.46664 * 135.31032 * 17 16 15 46 46 H 0.96697 * 114.00046 * 59.99894 * 18 17 16 47 47 H 1.08999 * 110.57378 * 268.57265 * 24 23 14 48 48 H 1.09002 * 110.57066 * 145.69440 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8775 1.5215 8 8 1.6073 -2.4160 1.5211 9 6 2.0286 -3.1813 2.6520 10 8 1.5011 -4.5058 2.5540 11 6 2.0902 -5.3400 1.6562 12 6 3.1534 -4.8916 0.8876 13 6 3.7540 -5.7417 -0.0267 14 6 3.2882 -7.0460 -0.1711 15 6 2.2253 -7.4894 0.5987 16 6 1.6318 -6.6414 1.5147 17 6 0.4801 -7.1292 2.3556 18 8 -0.7403 -6.5764 1.8586 19 14 0.3973 -8.9887 2.2764 20 1 1.6655 -9.5631 2.7928 21 1 -0.7371 -9.4694 3.1055 22 1 0.1977 -9.4157 0.8682 23 8 4.0388 -7.6741 -1.1241 24 6 4.6991 -6.6200 -1.8494 25 8 4.7959 -5.5524 -0.8881 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 1.8930 -0.5141 3.9322 36 1 1.8933 1.0277 3.0423 37 1 0.4400 0.0000 3.0422 38 1 4.3776 -1.3911 0.6315 39 1 4.3770 0.1502 1.5218 40 1 4.3773 -1.3910 2.4117 41 1 1.6637 -2.7112 3.5652 42 1 3.1174 -3.2251 2.6759 43 1 3.5138 -3.8800 1.0022 44 1 1.8634 -8.5007 0.4868 45 1 0.6267 -6.8157 3.3893 46 1 -0.9354 -6.8145 0.9419 47 1 4.1002 -6.3112 -2.7062 48 1 5.6913 -6.9384 -2.1691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_1880786_14468166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:19:01 Heat of formation + Delta-G solvation = -192.542123 kcal Electronic energy + Delta-G solvation = -29641.270314 eV Core-core repulsion = 25593.665003 eV Total energy + Delta-G solvation = -4047.605311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.27349 -41.12704 -38.82280 -37.36074 -37.17555 -36.85972 -36.61155 -32.33117 -30.74432 -29.46765 -29.09615 -27.85796 -27.46173 -27.41034 -27.08740 -25.88835 -23.72914 -23.09839 -20.50918 -19.96926 -19.29384 -18.77257 -18.41851 -18.15965 -17.24881 -16.97183 -16.68519 -16.16106 -15.98155 -15.89390 -15.47733 -15.25826 -15.13625 -14.95168 -14.88095 -14.75503 -14.51959 -14.16395 -14.05775 -13.93302 -13.70304 -13.47411 -13.40121 -13.21884 -13.18076 -12.98817 -12.93547 -12.81518 -12.42066 -12.21719 -12.11730 -11.95423 -11.79068 -11.71331 -11.60561 -11.54018 -11.34367 -10.42556 -10.34350 -10.10605 -9.98330 -8.89862 -0.13164 0.03924 1.19025 1.29416 1.46652 1.57223 1.62894 1.67680 1.94249 2.05106 2.12644 2.32624 2.38041 2.51795 3.28622 3.52855 3.70806 3.75388 3.79946 3.88952 3.98896 4.05595 4.09359 4.09934 4.15346 4.30338 4.40283 4.43569 4.65245 4.69564 4.70980 4.76548 4.77502 4.79757 4.81693 4.84135 4.86941 4.97828 4.99533 5.07036 5.07304 5.07953 5.16957 5.24901 5.34728 5.38633 5.44220 5.57410 5.63643 5.85857 6.18357 6.78014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.382 4.382 3 C -0.141 4.141 4 C -0.136 4.136 5 Si 1.320 2.680 6 C -0.517 4.517 7 C -0.521 4.521 8 O -0.661 6.661 9 C 0.228 3.772 10 O -0.288 6.288 11 C 0.167 3.833 12 C -0.185 4.185 13 C 0.066 3.934 14 C -0.015 4.015 15 C -0.073 4.073 16 C -0.148 4.148 17 C -0.064 4.064 18 O -0.546 6.546 19 Si 0.978 3.022 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.247 1.247 23 O -0.322 6.322 24 C 0.204 3.796 25 O -0.320 6.320 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.124 0.876 46 H 0.386 0.614 47 H 0.104 0.896 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 1.509 0.466 2.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.424 4.424 3 C -0.198 4.198 4 C -0.193 4.193 5 Si 1.452 2.548 6 C -0.620 4.620 7 C -0.623 4.623 8 O -0.621 6.621 9 C 0.116 3.884 10 O -0.202 6.202 11 C 0.121 3.879 12 C -0.204 4.204 13 C 0.021 3.979 14 C -0.059 4.059 15 C -0.092 4.092 16 C -0.149 4.149 17 C -0.174 4.174 18 O -0.353 6.353 19 Si 0.801 3.199 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.170 1.170 23 O -0.239 6.239 24 C 0.094 3.906 25 O -0.236 6.236 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.155 0.845 42 H 0.098 0.902 43 H 0.172 0.828 44 H 0.172 0.828 45 H 0.142 0.858 46 H 0.235 0.765 47 H 0.122 0.878 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.452 0.573 0.920 1.812 hybrid contribution 0.637 0.934 -1.075 1.560 sum 2.089 1.507 -0.155 2.580 Atomic orbital electron populations 1.21539 0.94289 1.01605 1.01974 1.25924 1.00370 1.03163 1.12970 1.21607 1.01347 0.94464 1.02382 1.21529 1.00969 0.99734 0.97078 0.76072 0.62533 0.51536 0.64698 1.27054 1.07149 1.10153 1.17627 1.27123 1.24752 1.05702 1.04763 1.85324 1.80316 1.47317 1.49173 1.23972 0.97544 0.77767 0.89107 1.86380 1.58158 1.22186 1.53453 1.18281 0.90389 0.89804 0.89422 1.20210 0.98805 1.01146 1.00265 1.19629 0.88999 0.93842 0.95412 1.19709 0.97408 0.91030 0.97794 1.19951 0.92974 1.01208 0.95044 1.19496 1.01982 0.92024 1.01432 1.24878 0.82055 1.10514 0.99925 1.86537 1.37933 1.76762 1.34019 0.85331 0.80490 0.73064 0.81029 1.17989 1.19153 1.17038 1.87368 1.58855 1.32001 1.45646 1.26140 1.01642 0.73761 0.89073 1.87354 1.44671 1.51129 1.40461 0.91824 0.93354 0.92910 0.91674 0.93151 0.91526 0.93107 0.93307 0.92078 0.90307 0.89915 0.90928 0.91288 0.89706 0.90490 0.84512 0.90159 0.82797 0.82804 0.85774 0.76538 0.87833 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.09 7.85 71.98 0.56 0.48 16 2 C -0.38 0.36 0.53 -10.79 -0.01 0.36 16 3 C -0.14 0.31 7.85 71.98 0.56 0.87 16 4 C -0.14 -0.11 7.85 71.98 0.56 0.46 16 5 Si 1.32 -5.11 8.45 68.60 0.58 -4.53 16 6 C -0.52 2.29 8.50 113.37 0.96 3.26 16 7 C -0.52 2.10 8.50 113.37 0.96 3.06 16 8 O -0.66 -0.12 8.03 -126.21 -1.01 -1.13 16 9 C 0.23 -0.45 5.42 113.37 0.61 0.17 16 10 O -0.29 -1.05 9.72 -70.49 -0.69 -1.73 16 11 C 0.17 0.79 6.60 22.48 0.15 0.94 16 12 C -0.19 -0.87 8.79 22.44 0.20 -0.68 16 13 C 0.07 0.44 7.15 22.59 0.16 0.60 16 14 C -0.02 -0.10 7.15 22.58 0.16 0.06 16 15 C -0.07 -0.28 8.67 22.33 0.19 -0.08 16 16 C -0.15 -0.52 5.27 -19.76 -0.10 -0.62 16 17 C -0.06 -0.07 2.37 71.24 0.17 0.10 16 18 O -0.55 -1.45 12.88 -148.98 -1.92 -3.37 16 19 Si 0.98 -0.52 25.50 68.60 1.75 1.23 16 20 H -0.26 -0.21 7.11 99.48 0.71 0.49 16 21 H -0.27 -0.59 7.11 99.48 0.71 0.12 16 22 H -0.25 0.34 6.72 99.48 0.67 1.01 16 23 O -0.32 -1.84 11.41 -77.27 -0.88 -2.72 16 24 C 0.20 -0.05 8.89 113.37 1.01 0.96 16 25 O -0.32 -1.77 11.40 -76.14 -0.87 -2.63 16 26 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 27 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.05 0.12 7.96 -2.39 -0.02 0.10 16 29 H 0.06 -0.25 7.79 -2.38 -0.02 -0.27 16 30 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 32 H 0.05 0.12 7.97 -2.38 -0.02 0.10 16 33 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.06 -0.05 7.79 -2.38 -0.02 -0.07 16 35 H 0.08 -0.51 7.48 -2.39 -0.02 -0.53 16 36 H 0.08 -0.42 7.79 -2.39 -0.02 -0.44 16 37 H 0.07 -0.23 7.79 -2.38 -0.02 -0.25 16 38 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 39 H 0.08 -0.41 7.79 -2.39 -0.02 -0.43 16 40 H 0.08 -0.44 7.48 -2.39 -0.02 -0.46 16 41 H 0.14 -1.05 7.21 -2.39 -0.02 -1.07 16 42 H 0.08 -0.49 5.77 -2.39 -0.01 -0.50 16 43 H 0.15 0.24 5.84 -2.91 -0.02 0.23 16 44 H 0.15 0.07 4.88 -2.91 -0.01 0.05 16 45 H 0.12 0.00 7.82 -2.39 -0.02 -0.02 16 46 H 0.39 -1.48 8.70 -74.06 -0.64 -2.13 16 47 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 48 H 0.16 -1.06 8.14 -2.39 -0.02 -1.08 16 Total: 0.00 -15.20 383.86 4.16 -11.04 By element: Atomic # 1 Polarization: -7.12 SS G_CDS: 1.04 Total: -6.08 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.17 Total: 9.93 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -5.37 Total: -11.59 kcal Atomic # 14 Polarization: -5.63 SS G_CDS: 2.33 Total: -3.30 kcal Total: -15.20 4.16 -11.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_14468166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.503 kcal (2) G-P(sol) polarization free energy of solvation -15.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds