Wall clock time and date at job start Mon Mar 8 2021 15:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47029 * 2 1 4 4 C 1.52997 * 109.47549 * 239.99879 * 2 1 3 5 5 O 1.45198 * 109.46967 * 119.99614 * 2 1 3 6 6 C 1.34638 * 117.00009 * 60.00432 * 5 2 1 7 7 O 1.21515 * 119.99687 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00305 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00170 * 180.02562 * 8 6 5 10 10 H 1.08994 * 112.90436 * 336.24550 * 9 8 6 11 11 C 1.53777 * 113.61726 * 107.50148 * 9 8 6 12 12 C 1.53783 * 87.08231 * 89.11340 * 11 9 8 13 13 H 1.08996 * 113.69156 * 270.87620 * 12 11 9 14 14 C 1.53007 * 113.61254 * 139.97922 * 12 11 9 15 15 O 1.42899 * 109.46699 * 87.50510 * 14 12 11 16 16 C 1.35978 * 116.99807 * 179.97438 * 15 14 12 17 17 C 1.38648 * 119.98792 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.95861 * 359.95898 * 17 16 15 19 19 O 1.42899 * 109.47104 * 75.01708 * 18 17 16 20 20 Si 1.86299 * 109.47000 * 195.02014 * 18 17 16 21 21 C 1.38263 * 120.08689 * 179.97438 * 17 16 15 22 22 C 1.38488 * 120.09780 * 359.97438 * 21 17 16 23 23 O 1.36600 * 131.46956 * 180.02562 * 22 21 17 24 24 C 1.43991 * 105.47342 * 197.27119 * 23 22 21 25 25 O 1.43988 * 103.74510 * 332.86174 * 24 23 22 26 26 C 1.36501 * 105.50127 * 27.15080 * 25 24 23 27 27 C 1.38485 * 131.47796 * 162.99058 * 26 25 24 28 28 C 1.53782 * 87.08088 * 25.43229 * 12 11 9 29 29 H 1.08995 * 109.47128 * 300.00102 * 1 2 3 30 30 H 1.09004 * 109.46613 * 60.00277 * 1 2 3 31 31 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47138 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46867 * 299.99418 * 3 2 1 34 34 H 1.09000 * 109.47073 * 59.99522 * 3 2 1 35 35 H 1.09001 * 109.46897 * 299.99894 * 4 2 1 36 36 H 1.09007 * 109.46957 * 59.99872 * 4 2 1 37 37 H 1.08997 * 109.47109 * 180.02562 * 4 2 1 38 38 H 0.97001 * 119.99768 * 359.97438 * 8 6 5 39 39 H 1.09002 * 113.61101 * 334.56936 * 11 9 8 40 40 H 1.09005 * 113.61263 * 203.66318 * 11 9 8 41 41 H 1.09004 * 109.46865 * 327.50459 * 14 12 11 42 42 H 1.08999 * 109.47131 * 207.50499 * 14 12 11 43 43 H 1.08996 * 109.46863 * 315.02090 * 18 17 16 44 44 H 0.96697 * 114.00324 * 179.97438 * 19 18 17 45 45 H 1.48500 * 110.00215 * 299.99791 * 20 18 17 46 46 H 1.48495 * 110.00172 * 61.31943 * 20 18 17 47 47 H 1.08001 * 119.95454 * 179.97438 * 21 17 16 48 48 H 1.09005 * 110.56835 * 91.42465 * 24 23 22 49 49 H 1.08995 * 110.56947 * 214.14798 * 24 23 22 50 50 H 1.08005 * 120.00399 * 359.68246 * 27 26 25 51 51 H 1.09004 * 113.61454 * 89.11381 * 28 12 11 52 52 H 1.08992 * 113.61644 * 220.01610 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0671 -2.6653 2.4172 9 6 1.6740 -4.0668 2.5832 10 1 0.7607 -4.3179 2.0439 11 6 2.8228 -5.0612 2.3458 12 6 3.1493 -4.9200 3.8420 13 1 3.8451 -4.1110 4.0640 14 6 3.5390 -6.2396 4.5114 15 8 4.9447 -6.4507 4.3653 16 6 5.4581 -7.5866 4.9087 17 6 6.8144 -7.8537 4.8029 18 6 7.7185 -6.8851 4.0849 19 8 7.9430 -5.7410 4.9112 20 14 9.3460 -7.7126 3.7145 21 6 7.3387 -9.0078 5.3551 22 6 6.5106 -9.8999 6.0158 23 8 6.7731 -11.0877 6.6371 24 6 5.4975 -11.7425 6.7688 25 8 4.5567 -10.6533 6.8120 26 6 5.1476 -9.6334 6.1236 27 6 4.6255 -8.4745 5.5737 28 6 1.6740 -4.5373 4.0473 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2491 36 1 1.6768 -0.2074 -2.1392 37 1 3.1301 -0.7216 -1.2489 38 1 2.6267 -2.2364 3.0834 39 1 3.6043 -4.6769 1.6903 40 1 2.4855 -6.0589 2.0647 41 1 2.9974 -7.0598 4.0401 42 1 3.2858 -6.1982 5.5707 43 1 7.2489 -6.5731 3.1521 44 1 8.5181 -5.0741 4.5118 45 1 9.9964 -8.1428 4.9783 46 1 9.1297 -8.8855 2.8298 47 1 8.3955 -9.2140 5.2711 48 1 5.3043 -12.3816 5.9072 49 1 5.4581 -12.3224 7.6909 50 1 3.5690 -8.2660 5.6561 51 1 1.0228 -5.3918 4.2313 52 1 1.5281 -3.7304 4.7653 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_1880786_15734082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:16:42 Heat of formation + Delta-G solvation = -146.615354 kcal Electronic energy + Delta-G solvation = -35356.304824 eV Core-core repulsion = 30483.724528 eV Total energy + Delta-G solvation = -4872.580296 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -43.38931 -41.96440 -41.20570 -40.23066 -38.40198 -37.79242 -37.45880 -37.05222 -35.35781 -34.09097 -32.56180 -31.04159 -29.27217 -28.36882 -28.30024 -27.48501 -26.72899 -26.02354 -25.10129 -23.87260 -23.26254 -22.71187 -21.16956 -20.40259 -19.81974 -19.35020 -18.89753 -18.74931 -18.39408 -17.97143 -17.60310 -17.23882 -17.06160 -16.67888 -16.53209 -16.28930 -16.21858 -15.68507 -15.49990 -15.44979 -15.40018 -15.05926 -14.79942 -14.62987 -14.40227 -14.24489 -14.18527 -13.94297 -13.69160 -13.49443 -13.36638 -13.28848 -13.19407 -13.07622 -12.92094 -12.86775 -12.61603 -12.43245 -12.32613 -12.18018 -12.03808 -11.87738 -11.63914 -11.42956 -11.39614 -11.13800 -11.11217 -10.25375 -10.18838 -10.12525 -8.97757 -4.97617 -0.27708 -0.08284 1.13071 1.28196 1.51447 1.62545 1.72105 1.94582 1.97445 2.16598 2.29985 3.10827 3.13260 3.40001 3.42393 3.48853 3.58598 3.68662 3.74082 3.76772 3.79980 3.81319 3.85797 3.94392 3.95275 3.99303 4.15824 4.19348 4.24431 4.41767 4.43103 4.48210 4.50630 4.61214 4.61644 4.72034 4.74042 4.74794 4.76261 4.76583 4.83096 4.87763 4.88262 4.90005 4.99463 5.04893 5.06020 5.07867 5.17845 5.27054 5.31883 5.48103 5.61506 5.76790 6.19180 6.37529 6.95254 7.32779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.684 5.684 9 C 0.130 3.870 10 H 0.096 0.904 11 C -0.145 4.145 12 C -0.101 4.101 13 H 0.104 0.896 14 C 0.055 3.945 15 O -0.296 6.296 16 C 0.172 3.828 17 C -0.119 4.119 18 C -0.059 4.059 19 O -0.559 6.559 20 Si 0.772 3.228 21 C -0.080 4.080 22 C -0.022 4.022 23 O -0.326 6.326 24 C 0.204 3.796 25 O -0.316 6.316 26 C 0.073 3.927 27 C -0.191 4.191 28 C -0.120 4.120 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.417 0.583 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.402 0.598 45 H -0.292 1.292 46 H -0.288 1.288 47 H 0.136 0.864 48 H 0.107 0.893 49 H 0.164 0.836 50 H 0.168 0.832 51 H 0.118 0.882 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 2.987 -1.252 3.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.400 3.600 7 O -0.484 6.484 8 N -0.343 5.343 9 C 0.026 3.974 10 H 0.114 0.886 11 C -0.183 4.183 12 C -0.119 4.119 13 H 0.122 0.878 14 C -0.019 4.019 15 O -0.209 6.209 16 C 0.125 3.875 17 C -0.120 4.120 18 C -0.169 4.169 19 O -0.368 6.368 20 Si 0.678 3.322 21 C -0.098 4.098 22 C -0.066 4.066 23 O -0.243 6.243 24 C 0.094 3.906 25 O -0.232 6.232 26 C 0.027 3.973 27 C -0.210 4.210 28 C -0.158 4.158 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.254 0.746 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.253 0.747 45 H -0.220 1.220 46 H -0.215 1.215 47 H 0.153 0.847 48 H 0.125 0.875 49 H 0.181 0.819 50 H 0.185 0.815 51 H 0.136 0.864 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.175 1.798 -1.177 2.156 hybrid contribution -0.450 -0.636 0.632 1.003 sum -0.625 1.163 -0.545 1.428 Atomic orbital electron populations 1.22476 0.94040 1.03705 1.03517 1.22354 0.94457 0.92576 0.81480 1.21894 1.02496 0.90862 1.04245 1.22473 1.01663 1.02232 0.97351 1.86312 1.71518 1.23260 1.47301 1.18313 0.78557 0.80721 0.82443 1.90907 1.42241 1.71051 1.44159 1.44374 1.54951 1.11862 1.23109 1.21837 0.98634 0.78149 0.98817 0.88601 1.23567 0.98155 1.00255 0.96350 1.22588 0.97549 0.96326 0.95432 0.87751 1.23224 0.77971 0.98763 1.01963 1.86194 1.26465 1.35949 1.72313 1.18208 0.91216 0.85967 0.92130 1.18621 0.92240 0.96137 1.05010 1.24507 1.06557 0.90637 0.95163 1.86456 1.73454 1.31433 1.45502 0.94423 0.78148 0.81302 0.78351 1.19776 0.99312 0.93336 0.97424 1.19648 0.93578 0.91122 1.02293 1.87366 1.32443 1.29412 1.75119 1.26181 0.69876 0.87446 1.07111 1.87350 1.43054 1.22840 1.69922 1.19636 0.90071 0.92503 0.95060 1.20294 1.02306 0.93817 1.04591 1.23339 0.94912 1.02850 0.94698 0.91922 0.89496 0.91762 0.91135 0.88327 0.91178 0.91801 0.89484 0.91907 0.74625 0.91720 0.87960 0.90120 0.90421 0.89103 0.74720 1.22000 1.21531 0.84683 0.87528 0.81891 0.81475 0.86351 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 2 C 0.13 0.32 1.13 -10.79 -0.01 0.30 16 3 C -0.14 0.35 8.85 71.98 0.64 0.98 16 4 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 5 O -0.37 -1.82 9.94 -55.47 -0.55 -2.37 16 6 C 0.65 3.86 8.06 129.79 1.05 4.90 16 7 O -0.59 -6.72 11.48 19.79 0.23 -6.49 16 8 N -0.68 0.40 5.27 -567.61 -2.99 -2.59 16 9 C 0.13 -0.36 4.32 45.52 0.20 -0.16 16 10 H 0.10 0.07 7.46 -2.39 -0.02 0.05 16 11 C -0.14 0.53 7.43 31.12 0.23 0.76 16 12 C -0.10 0.61 3.89 -10.26 -0.04 0.57 16 13 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 14 C 0.06 -0.24 4.58 71.98 0.33 0.09 16 15 O -0.30 -0.64 9.46 -93.30 -0.88 -1.52 16 16 C 0.17 0.90 6.66 22.48 0.15 1.05 16 17 C -0.12 -0.82 5.31 -19.76 -0.10 -0.93 16 18 C -0.06 -0.09 2.36 71.24 0.17 0.08 16 19 O -0.56 -0.74 12.86 -148.98 -1.92 -2.65 16 20 Si 0.77 -0.40 30.19 68.60 2.07 1.67 16 21 C -0.08 -0.74 8.67 22.34 0.19 -0.55 16 22 C -0.02 -0.22 7.15 22.59 0.16 -0.06 16 23 O -0.33 -2.90 11.41 -77.24 -0.88 -3.78 16 24 C 0.20 0.23 8.89 113.37 1.01 1.24 16 25 O -0.32 -1.99 11.40 -76.07 -0.87 -2.86 16 26 C 0.07 0.57 7.15 22.59 0.16 0.73 16 27 C -0.19 -0.83 9.05 22.44 0.20 -0.63 16 28 C -0.12 0.97 7.39 31.12 0.23 1.20 16 29 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 31 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 36 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 37 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.42 -1.98 8.81 -92.71 -0.82 -2.80 16 39 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.10 -0.50 7.90 -2.38 -0.02 -0.52 16 41 H 0.08 -0.53 7.37 -2.39 -0.02 -0.55 16 42 H 0.08 -0.45 7.65 -2.39 -0.02 -0.47 16 43 H 0.09 -0.13 7.82 -2.39 -0.02 -0.14 16 44 H 0.40 -3.74 8.74 -74.06 -0.65 -4.39 16 45 H -0.29 -1.88 6.74 99.48 0.67 -1.21 16 46 H -0.29 -1.46 7.11 99.48 0.71 -0.76 16 47 H 0.14 1.18 4.89 -2.91 -0.01 1.17 16 48 H 0.11 -0.36 8.14 -2.38 -0.02 -0.38 16 49 H 0.16 -0.90 8.14 -2.39 -0.02 -0.92 16 50 H 0.17 -0.20 6.29 -2.91 -0.02 -0.22 16 51 H 0.12 -1.26 8.10 -2.38 -0.02 -1.28 16 52 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 Total: 0.00 -24.13 417.96 -0.51 -24.64 By element: Atomic # 1 Polarization: -13.34 SS G_CDS: -0.49 Total: -13.83 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.76 Total: 9.78 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -2.99 Total: -2.59 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -4.87 Total: -19.67 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.07 Total: 1.67 kcal Total: -24.13 -0.51 -24.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_15734082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.975 kcal (2) G-P(sol) polarization free energy of solvation -24.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds