Wall clock time and date at job start Mon Mar 8 2021 16:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99842 * 2 1 4 4 C 1.53008 * 112.84805 * 294.01515 * 3 2 1 5 5 F 1.39901 * 109.46800 * 195.94625 * 4 3 2 6 6 F 1.39901 * 109.47058 * 315.94706 * 4 3 2 7 7 F 1.39897 * 109.46873 * 75.94651 * 4 3 2 8 8 C 1.54053 * 113.68986 * 162.74203 * 3 2 1 9 9 C 1.53779 * 86.98289 * 270.87145 * 8 3 2 10 10 H 1.09005 * 113.61241 * 219.98040 * 9 8 3 11 11 C 1.52998 * 113.61313 * 89.16390 * 9 8 3 12 12 O 1.42900 * 109.47126 * 85.86129 * 11 9 8 13 13 C 1.35982 * 116.99972 * 180.02562 * 12 11 9 14 14 C 1.38658 * 119.98834 * 179.97438 * 13 12 11 15 15 C 1.50700 * 119.95530 * 359.97438 * 14 13 12 16 16 O 1.42899 * 109.47120 * 284.99989 * 15 14 13 17 17 Si 1.86301 * 109.47127 * 165.00079 * 15 14 13 18 18 C 1.38262 * 120.08744 * 179.97438 * 14 13 12 19 19 C 1.38486 * 120.09478 * 0.03986 * 18 14 13 20 20 O 1.36607 * 131.46996 * 179.97438 * 19 18 14 21 21 C 1.43978 * 105.47558 * 162.71459 * 20 19 18 22 22 O 1.43983 * 103.74833 * 27.13718 * 21 20 19 23 23 C 1.36512 * 105.49881 * 332.84855 * 22 21 20 24 24 C 1.38490 * 131.47250 * 197.30683 * 23 22 21 25 25 C 1.53776 * 87.17555 * 334.57072 * 9 8 3 26 26 H 1.09002 * 109.47266 * 184.83004 * 1 2 3 27 27 H 1.09006 * 109.47447 * 304.82755 * 1 2 3 28 28 H 1.08996 * 109.47580 * 64.83385 * 1 2 3 29 29 H 1.08999 * 113.61361 * 156.36645 * 8 3 2 30 30 H 1.09002 * 113.69663 * 25.39268 * 8 3 2 31 31 H 1.09000 * 109.47151 * 325.86045 * 11 9 8 32 32 H 1.08998 * 109.46991 * 205.86112 * 11 9 8 33 33 H 1.08995 * 109.47374 * 44.99739 * 15 14 13 34 34 H 0.96699 * 114.00220 * 180.02562 * 16 15 14 35 35 H 1.48496 * 110.00033 * 298.67781 * 17 15 14 36 36 H 1.48502 * 109.99739 * 59.99919 * 17 15 14 37 37 H 1.07997 * 119.95021 * 180.02562 * 18 14 13 38 38 H 1.08999 * 110.57283 * 145.70503 * 21 20 19 39 39 H 1.09004 * 110.56760 * 268.57277 * 21 20 19 40 40 H 1.07999 * 120.00745 * 0.02562 * 24 23 22 41 41 H 1.09000 * 113.61099 * 140.02341 * 25 9 8 42 42 H 1.09004 * 113.61488 * 270.84040 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7275 2.0816 -1.2880 5 9 2.6022 3.1697 -1.3781 6 9 1.9146 1.2403 -2.3900 7 9 0.4074 2.5444 -1.2733 8 6 3.4926 1.3230 0.4185 9 6 2.9981 1.4842 1.8657 10 1 3.5936 2.1810 2.4556 11 6 2.7567 0.1543 2.5825 12 8 3.9806 -0.3046 3.1600 13 6 3.9398 -1.4826 3.8380 14 6 5.0919 -1.9860 4.4227 15 6 6.3886 -1.2271 4.3055 16 8 6.9135 -1.3818 2.9855 17 14 7.6121 -1.8934 5.5424 18 6 5.0527 -3.1833 5.1130 19 6 3.8628 -3.8835 5.2217 20 8 3.5618 -5.0657 5.8365 21 6 2.1281 -5.0756 5.9690 22 8 1.6782 -4.2459 4.8817 23 6 2.7042 -3.3799 4.6349 24 6 2.7457 -2.1800 3.9447 25 6 1.7210 2.1086 1.2792 26 1 -0.3634 -1.0240 0.0865 27 1 -0.3634 0.5869 0.8436 28 1 -0.3634 0.4370 -0.9301 29 1 4.0413 2.1879 0.0457 30 1 4.0104 0.3813 0.2363 31 1 2.3934 -0.5834 1.8670 32 1 2.0143 0.2946 3.3682 33 1 6.2103 -0.1703 4.5040 34 1 7.7496 -0.9190 2.8379 35 1 7.0919 -1.7094 6.9211 36 1 7.8638 -3.3336 5.2825 37 1 5.9513 -3.5731 5.5679 38 1 1.7407 -6.0889 5.8632 39 1 1.8291 -4.6482 6.9261 40 1 1.8484 -1.7874 3.4895 41 1 0.8095 1.8006 1.7914 42 1 1.7857 3.1881 1.1427 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_1880786_17321600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:17:41 Heat of formation + Delta-G solvation = -246.880654 kcal Electronic energy + Delta-G solvation = -34430.790663 eV Core-core repulsion = 29124.447711 eV Total energy + Delta-G solvation = -5306.342952 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.111 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -51.24715 -48.77892 -48.72451 -43.38501 -41.68674 -40.69694 -38.39717 -37.46735 -37.20043 -36.85438 -32.56091 -31.29957 -30.12361 -28.20616 -27.56974 -27.32184 -26.74634 -25.98336 -24.26280 -23.32851 -22.86872 -20.63652 -20.08462 -19.64432 -19.52113 -19.29313 -18.82655 -18.70009 -18.36228 -17.94645 -17.28067 -16.92321 -16.73215 -16.49193 -16.21176 -16.07620 -15.74023 -15.64369 -15.57550 -15.48143 -15.37727 -15.17628 -15.01699 -14.89421 -14.77257 -14.63418 -14.31621 -14.18375 -14.04272 -13.96265 -13.55502 -13.42595 -13.21756 -13.15127 -12.73397 -12.58958 -12.20055 -12.08583 -12.00717 -11.86598 -11.58160 -11.31423 -10.79373 -10.22293 -10.11737 -8.97118 -4.95013 -0.26815 -0.07738 1.30887 1.51914 1.54366 1.65192 1.89703 1.97542 2.09699 2.17171 2.30146 2.57741 2.64175 2.90733 3.13504 3.32297 3.37943 3.43771 3.50351 3.57959 3.67201 3.78108 3.85407 3.96419 4.00840 4.15597 4.19866 4.22396 4.26212 4.30371 4.37823 4.49810 4.51029 4.54149 4.64336 4.72386 4.72729 4.74742 4.81656 4.85876 4.91456 5.03515 5.08170 5.71813 5.76822 6.16848 6.99216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.347 6.347 3 C 0.033 3.967 4 C 0.432 3.568 5 F -0.175 7.175 6 F -0.190 7.190 7 F -0.185 7.185 8 C -0.112 4.112 9 C -0.088 4.088 10 H 0.121 0.879 11 C 0.058 3.942 12 O -0.292 6.292 13 C 0.173 3.827 14 C -0.117 4.117 15 C -0.059 4.059 16 O -0.559 6.559 17 Si 0.772 3.228 18 C -0.080 4.080 19 C -0.021 4.021 20 O -0.326 6.326 21 C 0.204 3.796 22 O -0.316 6.316 23 C 0.072 3.928 24 C -0.191 4.191 25 C -0.133 4.133 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.402 0.598 35 H -0.287 1.287 36 H -0.295 1.295 37 H 0.137 0.863 38 H 0.163 0.837 39 H 0.108 0.892 40 H 0.164 0.836 41 H 0.107 0.893 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 4.579 3.576 5.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.265 6.265 3 C -0.010 4.010 4 C 0.378 3.622 5 F -0.157 7.157 6 F -0.171 7.171 7 F -0.166 7.166 8 C -0.149 4.149 9 C -0.107 4.107 10 H 0.139 0.861 11 C -0.016 4.016 12 O -0.205 6.205 13 C 0.126 3.874 14 C -0.118 4.118 15 C -0.169 4.169 16 O -0.369 6.369 17 Si 0.679 3.321 18 C -0.099 4.099 19 C -0.065 4.065 20 O -0.243 6.243 21 C 0.094 3.906 22 O -0.233 6.233 23 C 0.027 3.973 24 C -0.210 4.210 25 C -0.170 4.170 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.145 0.855 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.253 0.747 35 H -0.214 1.214 36 H -0.223 1.223 37 H 0.154 0.846 38 H 0.180 0.820 39 H 0.126 0.874 40 H 0.181 0.819 41 H 0.125 0.875 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.156 3.430 4.042 5.303 hybrid contribution -1.400 -0.344 -0.606 1.564 sum -1.556 3.085 3.436 4.873 Atomic orbital electron populations 1.23275 0.78815 1.05192 1.01847 1.88085 1.21997 1.22610 1.93841 1.24311 1.00758 0.86208 0.89683 1.21545 0.74126 0.78719 0.87854 1.93172 1.69300 1.56568 1.96631 1.93187 1.94887 1.71338 1.57714 1.93180 1.36893 1.89700 1.96855 1.23372 0.90345 1.05639 0.95578 1.21988 0.97893 0.95759 0.95028 0.86090 1.23026 0.84823 0.96229 0.97554 1.86131 1.35782 1.33165 1.65428 1.18176 0.91584 0.86285 0.91371 1.18625 0.94860 0.95693 1.02599 1.24520 0.95949 1.03006 0.93404 1.86470 1.44378 1.77234 1.28829 0.94438 0.84629 0.78933 0.74150 1.19787 0.95734 0.93261 1.01073 1.19646 0.95706 0.88470 1.02718 1.87365 1.25607 1.34148 1.77196 1.26186 0.75126 0.98890 0.90393 1.87352 1.37819 1.45083 1.53001 1.19619 0.86204 0.92346 0.99120 1.20271 0.99787 0.93785 1.07150 1.23634 0.99804 1.01569 0.91970 0.87225 0.90840 0.93758 0.85534 0.89498 0.90366 0.89739 0.88640 0.74680 1.21385 1.22306 0.84608 0.81995 0.87402 0.81899 0.87491 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.30 113.37 1.17 1.15 16 2 O -0.35 -0.18 8.35 -148.98 -1.24 -1.42 16 3 C 0.03 -0.06 0.85 -10.17 -0.01 -0.07 16 4 C 0.43 0.88 2.52 71.98 0.18 1.06 16 5 F -0.18 -0.30 15.82 44.97 0.71 0.41 16 6 F -0.19 -1.28 17.10 44.97 0.77 -0.51 16 7 F -0.18 -0.44 15.39 44.97 0.69 0.25 16 8 C -0.11 0.36 6.92 31.21 0.22 0.58 16 9 C -0.09 0.53 4.19 -10.27 -0.04 0.49 16 10 H 0.12 -1.00 8.14 -2.38 -0.02 -1.02 16 11 C 0.06 -0.17 4.34 71.98 0.31 0.14 16 12 O -0.29 -0.63 9.46 -93.35 -0.88 -1.51 16 13 C 0.17 0.94 6.66 22.48 0.15 1.09 16 14 C -0.12 -0.78 5.31 -19.76 -0.10 -0.88 16 15 C -0.06 -0.05 2.36 71.24 0.17 0.12 16 16 O -0.56 -0.59 12.86 -148.98 -1.92 -2.51 16 17 Si 0.77 -0.86 30.19 68.60 2.07 1.21 16 18 C -0.08 -0.73 8.67 22.33 0.19 -0.54 16 19 C -0.02 -0.22 7.15 22.58 0.16 -0.05 16 20 O -0.33 -2.90 11.41 -77.31 -0.88 -3.78 16 21 C 0.20 0.23 8.89 113.37 1.01 1.24 16 22 O -0.32 -2.08 11.40 -76.20 -0.87 -2.95 16 23 C 0.07 0.59 7.15 22.58 0.16 0.76 16 24 C -0.19 -0.96 9.05 22.44 0.20 -0.76 16 25 C -0.13 0.96 6.51 31.12 0.20 1.16 16 26 H 0.11 -0.59 8.14 -2.39 -0.02 -0.60 16 27 H 0.07 -0.53 6.55 -2.38 -0.02 -0.55 16 28 H 0.04 -0.06 6.69 -2.39 -0.02 -0.07 16 29 H 0.13 -0.69 7.02 -2.39 -0.02 -0.71 16 30 H 0.09 0.00 8.10 -2.39 -0.02 -0.02 16 31 H 0.08 -0.07 5.61 -2.39 -0.01 -0.08 16 32 H 0.08 -0.52 7.66 -2.39 -0.02 -0.54 16 33 H 0.10 -0.28 7.82 -2.39 -0.02 -0.30 16 34 H 0.40 -3.91 8.74 -74.06 -0.65 -4.56 16 35 H -0.29 -1.21 7.11 99.48 0.71 -0.51 16 36 H -0.29 -1.86 6.74 99.48 0.67 -1.18 16 37 H 0.14 1.16 4.89 -2.91 -0.01 1.14 16 38 H 0.16 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.16 0.05 6.29 -2.91 -0.02 0.03 16 41 H 0.11 -1.02 6.63 -2.39 -0.02 -1.04 16 42 H 0.13 -1.19 8.05 -2.39 -0.02 -1.21 16 Total: 0.00 -20.71 353.28 2.89 -17.82 By element: Atomic # 1 Polarization: -12.98 SS G_CDS: 0.47 Total: -12.51 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 3.97 Total: 5.49 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -5.79 Total: -12.17 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 2.17 Total: 0.16 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: 2.07 Total: 1.21 kcal Total: -20.71 2.89 -17.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_17321600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.061 kcal (2) G-P(sol) polarization free energy of solvation -20.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds