Wall clock time and date at job start Mon Mar 8 2021 13:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00362 * 2 1 4 4 C 1.38620 * 120.02383 * 359.97250 * 3 2 1 5 5 C 1.38653 * 119.88716 * 180.02562 * 4 3 2 6 6 O 1.35898 * 120.02526 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00037 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.42898 * 109.46704 * 64.99720 * 8 7 6 10 10 Si 1.63100 * 113.99618 * 179.97438 * 9 8 7 11 11 C 1.86304 * 109.47542 * 300.00276 * 10 9 8 12 12 C 1.86295 * 109.46905 * 60.00714 * 10 9 8 13 13 C 1.86305 * 109.46931 * 180.02562 * 10 9 8 14 14 C 1.52995 * 109.47146 * 60.00262 * 13 10 9 15 15 C 1.53005 * 109.47006 * 180.02562 * 13 10 9 16 16 C 1.53007 * 109.47081 * 300.00077 * 13 10 9 17 17 C 1.38748 * 119.94630 * 0.02562 * 5 4 3 18 18 C 1.38200 * 120.05718 * 359.74072 * 17 5 4 19 19 C 1.38156 * 120.10581 * 0.51689 * 18 17 5 20 20 C 1.50697 * 119.97228 * 179.76717 * 19 18 17 21 21 O 1.42906 * 109.46831 * 254.72329 * 20 19 18 22 22 Si 1.86300 * 109.47007 * 14.71718 * 20 19 18 23 23 H 1.48503 * 109.46942 * 60.00611 * 22 20 19 24 24 H 1.48503 * 109.47276 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47372 * 300.00074 * 22 20 19 26 26 H 1.09004 * 109.47093 * 300.00365 * 1 2 3 27 27 H 1.08996 * 109.46962 * 60.00452 * 1 2 3 28 28 H 1.08995 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.05190 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.47421 * 300.00184 * 7 6 5 31 31 H 1.09003 * 109.47090 * 59.99958 * 7 6 5 32 32 H 1.08993 * 109.47183 * 185.00480 * 8 7 6 33 33 H 1.09002 * 109.47012 * 305.00289 * 8 7 6 34 34 H 1.09002 * 109.46239 * 60.00179 * 11 10 9 35 35 H 1.08995 * 109.46853 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.46799 * 300.00364 * 11 10 9 37 37 H 1.09002 * 109.47489 * 60.00040 * 12 10 9 38 38 H 1.09008 * 109.47013 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47466 * 299.99444 * 12 10 9 40 40 H 1.09003 * 109.47654 * 60.00163 * 14 13 10 41 41 H 1.09006 * 109.47543 * 179.97438 * 14 13 10 42 42 H 1.09002 * 109.47462 * 299.99884 * 14 13 10 43 43 H 1.08998 * 109.47265 * 59.99987 * 15 13 10 44 44 H 1.08997 * 109.46680 * 180.02562 * 15 13 10 45 45 H 1.09002 * 109.46711 * 299.99811 * 15 13 10 46 46 H 1.08995 * 109.46613 * 60.00256 * 16 13 10 47 47 H 1.08993 * 109.46740 * 179.97438 * 16 13 10 48 48 H 1.09001 * 109.46773 * 299.99949 * 16 13 10 49 49 H 1.08006 * 119.97289 * 180.02562 * 17 5 4 50 50 H 1.07998 * 119.94441 * 180.25633 * 18 17 5 51 51 H 1.09000 * 109.47374 * 134.71902 * 20 19 18 52 52 H 0.96693 * 114.00047 * 60.00191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3738 -0.0006 5 6 1.9241 3.6076 -0.0011 6 8 1.1872 4.7495 -0.0012 7 6 1.9053 5.9850 -0.0011 8 6 0.9144 7.1508 -0.0018 9 8 0.1715 7.1452 1.2189 10 14 -0.9225 8.3492 1.3351 11 6 -0.0512 9.9925 1.2293 12 6 -2.1521 8.2074 -0.0572 13 6 -1.8135 8.2233 2.9665 14 6 -0.8033 8.3400 4.1096 15 6 -2.8402 9.3524 3.0753 16 6 -2.5290 6.8737 3.0539 17 6 3.3099 3.6755 -0.0016 18 6 4.0598 2.5147 0.0038 19 6 3.4320 1.2841 -0.0010 20 6 4.2527 0.0202 -0.0003 21 8 4.2193 -0.5700 -1.3014 22 14 6.0139 0.4237 0.4535 23 1 6.0486 1.0371 1.8055 24 1 6.8229 -0.8216 0.4535 25 1 6.5744 1.3773 -0.5373 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2130 2.3187 -0.0006 30 1 2.5321 6.0409 0.8888 31 1 2.5321 6.0409 -0.8911 32 1 1.4591 8.0906 -0.0915 33 1 0.2303 7.0457 -0.8439 34 1 0.4703 10.0663 0.2750 35 1 -0.7824 10.7971 1.3066 36 1 0.6683 10.0754 2.0440 37 1 -2.6620 7.2460 0.0048 38 1 -2.8836 9.0119 0.0208 39 1 -1.6307 8.2814 -1.0114 40 1 -0.2935 9.3014 4.0474 41 1 -1.3246 8.2668 5.0641 42 1 -0.0721 7.5353 4.0320 43 1 -3.5598 9.2689 2.2609 44 1 -3.3611 9.2789 4.0299 45 1 -2.3307 10.3140 3.0128 46 1 -1.7978 6.0691 2.9763 47 1 -3.0499 6.7999 4.0085 48 1 -3.2487 6.7906 2.2395 49 1 3.8030 4.6365 -0.0016 50 1 5.1384 2.5697 0.0076 51 1 3.8414 -0.6798 0.7269 52 1 4.5711 -0.0018 -2.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_197680_10264010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:55:56 Heat of formation + Delta-G solvation = -182.360116 kcal Electronic energy + Delta-G solvation = -28582.001767 eV Core-core repulsion = 24670.671075 eV Total energy + Delta-G solvation = -3911.330692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58599 -40.09424 -38.38290 -37.87701 -36.86706 -36.71441 -32.40148 -31.18135 -30.53135 -29.42213 -29.13512 -28.31143 -27.89226 -27.41854 -26.16210 -24.55118 -22.94687 -22.15642 -20.45357 -19.87542 -18.31852 -18.16743 -17.62187 -17.26085 -16.90493 -16.58060 -16.38185 -16.16481 -15.92239 -15.71185 -15.61757 -15.14538 -14.93130 -14.89004 -14.75633 -14.60450 -14.09665 -13.96033 -13.70281 -13.55758 -13.49915 -13.40911 -13.29546 -13.03176 -12.96300 -12.94574 -12.67365 -12.46198 -12.39697 -12.32456 -12.10209 -11.93385 -11.90714 -11.72463 -11.62430 -11.53431 -11.49970 -11.34203 -10.43114 -10.23027 -10.11027 -9.56260 -8.97017 0.30733 0.44063 1.24869 1.37665 1.46286 1.58931 1.68623 1.98181 1.99675 2.06559 2.36564 2.40265 2.68888 3.65383 3.66946 3.84318 3.90263 3.94378 4.05535 4.08985 4.09608 4.11496 4.15092 4.21035 4.29125 4.29724 4.42903 4.45119 4.50751 4.60349 4.63206 4.65285 4.67119 4.68306 4.70000 4.77969 4.79610 4.83120 4.97256 5.07734 5.08289 5.11602 5.14074 5.28470 5.31706 5.33954 5.35083 5.38563 5.46589 5.48654 5.55586 5.58540 6.30765 6.48733 6.73478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.299 6.299 3 C 0.195 3.805 4 C -0.246 4.246 5 C 0.179 3.821 6 O -0.301 6.301 7 C 0.056 3.944 8 C 0.086 3.914 9 O -0.619 6.619 10 Si 1.286 2.714 11 C -0.512 4.512 12 C -0.511 4.511 13 C -0.374 4.374 14 C -0.134 4.134 15 C -0.137 4.137 16 C -0.134 4.134 17 C -0.244 4.244 18 C -0.049 4.049 19 C -0.193 4.193 20 C -0.063 4.063 21 O -0.535 6.535 22 Si 0.948 3.052 23 H -0.250 1.250 24 H -0.254 1.254 25 H -0.253 1.253 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.132 0.868 50 H 0.131 0.869 51 H 0.115 0.885 52 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 3.308 -0.958 3.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.211 6.211 3 C 0.148 3.852 4 C -0.265 4.265 5 C 0.132 3.868 6 O -0.214 6.214 7 C -0.019 4.019 8 C 0.011 3.989 9 O -0.578 6.578 10 Si 1.418 2.582 11 C -0.614 4.614 12 C -0.613 4.613 13 C -0.418 4.418 14 C -0.191 4.191 15 C -0.194 4.194 16 C -0.191 4.191 17 C -0.263 4.263 18 C -0.067 4.067 19 C -0.194 4.194 20 C -0.174 4.174 21 O -0.340 6.340 22 Si 0.771 3.229 23 H -0.173 1.173 24 H -0.178 1.178 25 H -0.177 1.177 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.157 0.843 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.150 0.850 50 H 0.149 0.851 51 H 0.133 0.867 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.647 2.609 -0.256 2.701 hybrid contribution -0.702 1.194 -0.453 1.457 sum -0.055 3.803 -0.709 3.869 Atomic orbital electron populations 1.23153 0.78041 1.04357 1.01640 1.86188 1.21525 1.25871 1.87524 1.18409 0.91061 0.83807 0.91886 1.20436 1.00869 0.89589 1.15595 1.18672 0.89694 0.86080 0.92311 1.86135 1.35239 1.12289 1.87728 1.23052 0.94718 0.81685 1.02464 1.22093 0.94367 0.96531 0.85957 1.85410 1.61504 1.70300 1.40576 0.76737 0.59646 0.56617 0.65239 1.27045 1.09011 1.20915 1.04395 1.27028 1.13842 1.04983 1.15401 1.25774 1.02986 0.98203 1.14796 1.21511 0.98308 1.01590 0.97698 1.21558 0.98320 0.97282 1.02224 1.21507 1.00111 0.95703 1.01783 1.21074 0.92548 0.99558 1.13076 1.20713 0.99625 0.90996 0.95346 1.19506 0.91494 0.95811 1.12615 1.24732 1.08515 0.94881 0.89235 1.86554 1.86900 1.44382 1.16154 0.85778 0.75620 0.80431 0.81087 1.17318 1.17757 1.17740 0.92367 0.92360 0.87882 0.84313 0.90510 0.90460 0.90356 0.91415 0.91510 0.90621 0.90833 0.90790 0.90741 0.91511 0.92729 0.92789 0.92180 0.92512 0.92494 0.92540 0.92099 0.92829 0.92715 0.84980 0.85111 0.86722 0.78220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.30 -0.86 9.82 -19.42 -0.19 -1.05 16 3 C 0.20 0.56 6.66 -39.24 -0.26 0.30 16 4 C -0.25 -0.60 8.97 -39.29 -0.35 -0.95 16 5 C 0.18 0.40 6.68 -39.24 -0.26 0.14 16 6 O -0.30 -0.61 10.10 -24.28 -0.25 -0.86 16 7 C 0.06 -0.06 5.12 37.16 0.19 0.13 16 8 C 0.09 -0.14 5.51 37.16 0.20 0.07 16 9 O -0.62 -0.10 8.52 -40.09 -0.34 -0.44 16 10 Si 1.29 -1.68 8.45 -169.99 -1.44 -3.12 16 11 C -0.51 0.71 8.50 101.05 0.86 1.56 16 12 C -0.51 0.41 8.50 101.05 0.86 1.27 16 13 C -0.37 0.12 0.53 -90.62 -0.05 0.07 16 14 C -0.13 0.00 7.85 37.15 0.29 0.29 16 15 C -0.14 0.10 7.85 37.16 0.29 0.39 16 16 C -0.13 -0.04 7.85 37.16 0.29 0.25 16 17 C -0.24 -0.23 9.04 -39.41 -0.36 -0.59 16 18 C -0.05 -0.05 8.65 -39.63 -0.34 -0.39 16 19 C -0.19 -0.40 5.28 -104.45 -0.55 -0.95 16 20 C -0.06 -0.08 2.38 36.00 0.09 0.00 16 21 O -0.54 -1.09 12.88 -35.23 -0.45 -1.55 16 22 Si 0.95 0.16 25.48 -169.99 -4.33 -4.17 16 23 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 24 H -0.25 -0.41 7.11 56.52 0.40 0.00 16 25 H -0.25 0.10 6.74 56.52 0.38 0.48 16 26 H 0.06 -0.07 7.66 -51.93 -0.40 -0.47 16 27 H 0.06 -0.06 7.66 -51.93 -0.40 -0.46 16 28 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 29 H 0.14 0.18 6.30 -52.49 -0.33 -0.15 16 30 H 0.08 -0.11 7.66 -51.93 -0.40 -0.51 16 31 H 0.08 -0.24 7.66 -51.93 -0.40 -0.64 16 32 H 0.08 -0.32 7.21 -51.93 -0.37 -0.69 16 33 H 0.07 -0.16 7.21 -51.93 -0.37 -0.53 16 34 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 35 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 36 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 37 H 0.07 -0.01 7.79 -51.93 -0.40 -0.42 16 38 H 0.07 -0.08 7.79 -51.92 -0.40 -0.49 16 39 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 40 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 41 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 42 H 0.06 0.02 7.97 -51.93 -0.41 -0.39 16 43 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 44 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 45 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 46 H 0.06 0.05 7.96 -51.93 -0.41 -0.36 16 47 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 48 H 0.05 -0.01 7.80 -51.93 -0.40 -0.42 16 49 H 0.13 -0.18 6.29 -52.48 -0.33 -0.51 16 50 H 0.13 -0.10 4.88 -52.49 -0.26 -0.36 16 51 H 0.11 0.17 7.83 -51.93 -0.41 -0.23 16 52 H 0.37 -0.54 8.70 45.56 0.40 -0.15 16 LS Contribution 410.21 15.07 6.18 6.18 Total: 0.00 -6.24 410.21 -7.54 -13.78 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: -8.61 Total: -11.35 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 1.89 Total: 2.56 kcal Atomic # 8 Polarization: -2.66 SS G_CDS: -1.23 Total: -3.89 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: -5.77 Total: -7.29 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -6.24 -7.54 -13.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_197680_10264010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.575 kcal (2) G-P(sol) polarization free energy of solvation -6.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds