Wall clock time and date at job start Mon Mar 8 2021 13:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00362 * 2 1 4 4 C 1.38620 * 120.02383 * 359.97250 * 3 2 1 5 5 C 1.38653 * 119.88716 * 180.02562 * 4 3 2 6 6 O 1.35898 * 120.02526 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00037 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.42898 * 109.46704 * 64.99720 * 8 7 6 10 10 Si 1.63100 * 113.99618 * 179.97438 * 9 8 7 11 11 C 1.86304 * 109.47542 * 300.00276 * 10 9 8 12 12 C 1.86295 * 109.46905 * 60.00714 * 10 9 8 13 13 C 1.86305 * 109.46931 * 180.02562 * 10 9 8 14 14 C 1.52995 * 109.47146 * 60.00262 * 13 10 9 15 15 C 1.53005 * 109.47006 * 180.02562 * 13 10 9 16 16 C 1.53007 * 109.47081 * 300.00077 * 13 10 9 17 17 C 1.38748 * 119.94630 * 0.02562 * 5 4 3 18 18 C 1.38200 * 120.05718 * 359.74072 * 17 5 4 19 19 C 1.38156 * 120.10581 * 0.51689 * 18 17 5 20 20 C 1.50697 * 119.97228 * 179.76717 * 19 18 17 21 21 O 1.42906 * 109.46831 * 254.72329 * 20 19 18 22 22 Si 1.86300 * 109.47007 * 14.71718 * 20 19 18 23 23 H 1.48503 * 109.46942 * 60.00611 * 22 20 19 24 24 H 1.48503 * 109.47276 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47372 * 300.00074 * 22 20 19 26 26 H 1.09004 * 109.47093 * 300.00365 * 1 2 3 27 27 H 1.08996 * 109.46962 * 60.00452 * 1 2 3 28 28 H 1.08995 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.05190 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.47421 * 300.00184 * 7 6 5 31 31 H 1.09003 * 109.47090 * 59.99958 * 7 6 5 32 32 H 1.08993 * 109.47183 * 185.00480 * 8 7 6 33 33 H 1.09002 * 109.47012 * 305.00289 * 8 7 6 34 34 H 1.09002 * 109.46239 * 60.00179 * 11 10 9 35 35 H 1.08995 * 109.46853 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.46799 * 300.00364 * 11 10 9 37 37 H 1.09002 * 109.47489 * 60.00040 * 12 10 9 38 38 H 1.09008 * 109.47013 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47466 * 299.99444 * 12 10 9 40 40 H 1.09003 * 109.47654 * 60.00163 * 14 13 10 41 41 H 1.09006 * 109.47543 * 179.97438 * 14 13 10 42 42 H 1.09002 * 109.47462 * 299.99884 * 14 13 10 43 43 H 1.08998 * 109.47265 * 59.99987 * 15 13 10 44 44 H 1.08997 * 109.46680 * 180.02562 * 15 13 10 45 45 H 1.09002 * 109.46711 * 299.99811 * 15 13 10 46 46 H 1.08995 * 109.46613 * 60.00256 * 16 13 10 47 47 H 1.08993 * 109.46740 * 179.97438 * 16 13 10 48 48 H 1.09001 * 109.46773 * 299.99949 * 16 13 10 49 49 H 1.08006 * 119.97289 * 180.02562 * 17 5 4 50 50 H 1.07998 * 119.94441 * 180.25633 * 18 17 5 51 51 H 1.09000 * 109.47374 * 134.71902 * 20 19 18 52 52 H 0.96693 * 114.00047 * 60.00191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3738 -0.0006 5 6 1.9241 3.6076 -0.0011 6 8 1.1872 4.7495 -0.0012 7 6 1.9053 5.9850 -0.0011 8 6 0.9144 7.1508 -0.0018 9 8 0.1715 7.1452 1.2189 10 14 -0.9225 8.3492 1.3351 11 6 -0.0512 9.9925 1.2293 12 6 -2.1521 8.2074 -0.0572 13 6 -1.8135 8.2233 2.9665 14 6 -0.8033 8.3400 4.1096 15 6 -2.8402 9.3524 3.0753 16 6 -2.5290 6.8737 3.0539 17 6 3.3099 3.6755 -0.0016 18 6 4.0598 2.5147 0.0038 19 6 3.4320 1.2841 -0.0010 20 6 4.2527 0.0202 -0.0003 21 8 4.2193 -0.5700 -1.3014 22 14 6.0139 0.4237 0.4535 23 1 6.0486 1.0371 1.8055 24 1 6.8229 -0.8216 0.4535 25 1 6.5744 1.3773 -0.5373 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2130 2.3187 -0.0006 30 1 2.5321 6.0409 0.8888 31 1 2.5321 6.0409 -0.8911 32 1 1.4591 8.0906 -0.0915 33 1 0.2303 7.0457 -0.8439 34 1 0.4703 10.0663 0.2750 35 1 -0.7824 10.7971 1.3066 36 1 0.6683 10.0754 2.0440 37 1 -2.6620 7.2460 0.0048 38 1 -2.8836 9.0119 0.0208 39 1 -1.6307 8.2814 -1.0114 40 1 -0.2935 9.3014 4.0474 41 1 -1.3246 8.2668 5.0641 42 1 -0.0721 7.5353 4.0320 43 1 -3.5598 9.2689 2.2609 44 1 -3.3611 9.2789 4.0299 45 1 -2.3307 10.3140 3.0128 46 1 -1.7978 6.0691 2.9763 47 1 -3.0499 6.7999 4.0085 48 1 -3.2487 6.7906 2.2395 49 1 3.8030 4.6365 -0.0016 50 1 5.1384 2.5697 0.0076 51 1 3.8414 -0.6798 0.7269 52 1 4.5711 -0.0018 -2.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_197680_10264010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:55:56 Heat of formation + Delta-G solvation = -176.402894 kcal Electronic energy + Delta-G solvation = -28581.743442 eV Core-core repulsion = 24670.671075 eV Total energy + Delta-G solvation = -3911.072367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64803 -40.12735 -38.42233 -37.83918 -36.84436 -36.76971 -32.43366 -31.23895 -30.46309 -29.31606 -29.06523 -28.31966 -27.84570 -27.38880 -26.23018 -24.48520 -22.97955 -22.18677 -20.42559 -19.91690 -18.37442 -18.06340 -17.67790 -17.29938 -16.96385 -16.62060 -16.34748 -16.14346 -15.87065 -15.77484 -15.55521 -15.16763 -14.96344 -14.85663 -14.76255 -14.60430 -14.06927 -13.92141 -13.68797 -13.49985 -13.43232 -13.35436 -13.17561 -12.97045 -12.96647 -12.89770 -12.67528 -12.42991 -12.35968 -12.31492 -12.15665 -11.94570 -11.84192 -11.70413 -11.60198 -11.55831 -11.46692 -11.24409 -10.31606 -10.29879 -10.05916 -9.65872 -9.04996 0.22020 0.34656 1.21700 1.46258 1.52809 1.57222 1.78251 1.94912 2.07914 2.14091 2.37889 2.47903 2.60183 3.63246 3.68140 3.87605 3.95766 4.07625 4.09911 4.11407 4.12990 4.16390 4.26654 4.33328 4.34035 4.39024 4.43049 4.45853 4.53920 4.67751 4.69727 4.74014 4.75741 4.79069 4.79500 4.80157 4.81383 4.82508 4.98686 5.05937 5.07903 5.08212 5.19090 5.26483 5.28621 5.32996 5.39478 5.42291 5.47839 5.54710 5.59804 5.65005 6.27132 6.43928 6.80544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.319 6.319 3 C 0.178 3.822 4 C -0.259 4.259 5 C 0.168 3.832 6 O -0.319 6.319 7 C 0.045 3.955 8 C 0.074 3.926 9 O -0.639 6.639 10 Si 1.317 2.683 11 C -0.514 4.514 12 C -0.519 4.519 13 C -0.385 4.385 14 C -0.136 4.136 15 C -0.140 4.140 16 C -0.136 4.136 17 C -0.243 4.243 18 C -0.051 4.051 19 C -0.204 4.204 20 C -0.070 4.070 21 O -0.554 6.554 22 Si 0.989 3.011 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.237 1.237 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.141 0.859 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.047 0.953 48 H 0.058 0.942 49 H 0.157 0.843 50 H 0.151 0.849 51 H 0.104 0.896 52 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 4.774 -1.649 5.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.232 6.232 3 C 0.132 3.868 4 C -0.278 4.278 5 C 0.121 3.879 6 O -0.232 6.232 7 C -0.029 4.029 8 C -0.001 4.001 9 O -0.598 6.598 10 Si 1.447 2.553 11 C -0.617 4.617 12 C -0.621 4.621 13 C -0.427 4.427 14 C -0.193 4.193 15 C -0.197 4.197 16 C -0.193 4.193 17 C -0.262 4.262 18 C -0.068 4.068 19 C -0.205 4.205 20 C -0.180 4.180 21 O -0.361 6.361 22 Si 0.812 3.188 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.160 1.160 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.158 0.842 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.174 0.826 50 H 0.168 0.832 51 H 0.122 0.878 52 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.613 4.087 -0.956 4.497 hybrid contribution -1.068 0.720 -0.232 1.309 sum 0.545 4.808 -1.188 4.982 Atomic orbital electron populations 1.23328 0.76780 1.05438 1.02116 1.86151 1.23004 1.26284 1.87731 1.18636 0.91668 0.83899 0.92638 1.20562 1.01149 0.89972 1.16117 1.18836 0.90386 0.86131 0.92540 1.86118 1.36306 1.13052 1.87724 1.23360 0.95174 0.80623 1.03751 1.22391 0.94691 0.97556 0.85475 1.85404 1.62022 1.70946 1.41469 0.76183 0.58898 0.56540 0.63729 1.27041 1.09130 1.20543 1.04955 1.27132 1.14199 1.04575 1.16144 1.25963 1.03177 0.97742 1.15818 1.21531 0.98321 1.01884 0.97569 1.21599 0.98439 0.97621 1.02069 1.21523 1.00037 0.96115 1.01629 1.21368 0.92099 1.00670 1.12031 1.20959 1.00621 0.90530 0.94708 1.19724 0.91414 0.96578 1.12826 1.24912 1.09818 0.94425 0.88820 1.86507 1.87296 1.45356 1.16920 0.85192 0.73467 0.79380 0.80795 1.18091 1.20198 1.15981 0.91866 0.91917 0.86507 0.84165 0.90163 0.88134 0.87554 0.90931 0.90505 0.90389 0.90907 0.91724 0.90429 0.90921 0.91772 0.93511 0.92754 0.91924 0.93264 0.91564 0.92965 0.93428 0.92294 0.82558 0.83187 0.87809 0.76636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.12 16 2 O -0.32 -2.36 9.82 -92.41 -0.91 -3.27 16 3 C 0.18 1.26 6.66 22.49 0.15 1.41 16 4 C -0.26 -1.59 8.97 22.46 0.20 -1.39 16 5 C 0.17 0.81 6.68 22.49 0.15 0.96 16 6 O -0.32 -1.34 10.10 -87.75 -0.89 -2.23 16 7 C 0.05 -0.13 5.12 71.98 0.37 0.23 16 8 C 0.07 -0.31 5.51 71.98 0.40 0.08 16 9 O -0.64 -0.03 8.52 -144.34 -1.23 -1.26 16 10 Si 1.32 -3.94 8.45 68.60 0.58 -3.36 16 11 C -0.51 2.12 8.50 113.37 0.96 3.08 16 12 C -0.52 0.95 8.50 113.37 0.96 1.92 16 13 C -0.38 0.07 0.53 -10.79 -0.01 0.07 16 14 C -0.14 -0.08 7.85 71.98 0.56 0.48 16 15 C -0.14 0.18 7.85 71.98 0.56 0.74 16 16 C -0.14 -0.25 7.85 71.98 0.56 0.32 16 17 C -0.24 -0.29 9.04 22.38 0.20 -0.08 16 18 C -0.05 -0.07 8.65 22.24 0.19 0.12 16 19 C -0.20 -0.97 5.28 -19.75 -0.10 -1.07 16 20 C -0.07 -0.24 2.38 71.23 0.17 -0.07 16 21 O -0.55 -2.67 12.88 -148.98 -1.92 -4.59 16 22 Si 0.99 -0.04 25.48 68.60 1.75 1.70 16 23 H -0.26 -0.26 7.11 99.48 0.71 0.44 16 24 H -0.28 -1.00 7.11 99.48 0.71 -0.29 16 25 H -0.24 0.67 6.74 99.48 0.67 1.34 16 26 H 0.06 -0.06 7.66 -2.39 -0.02 -0.08 16 27 H 0.06 -0.05 7.66 -2.39 -0.02 -0.07 16 28 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.14 0.62 6.30 -2.91 -0.02 0.60 16 30 H 0.08 -0.31 7.66 -2.39 -0.02 -0.33 16 31 H 0.10 -0.81 7.66 -2.39 -0.02 -0.83 16 32 H 0.11 -1.09 7.21 -2.39 -0.02 -1.10 16 33 H 0.07 -0.40 7.21 -2.39 -0.02 -0.42 16 34 H 0.08 -0.46 7.48 -2.39 -0.02 -0.48 16 35 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 36 H 0.07 -0.26 7.79 -2.39 -0.02 -0.28 16 37 H 0.06 0.01 7.79 -2.39 -0.02 -0.01 16 38 H 0.08 -0.20 7.79 -2.38 -0.02 -0.22 16 39 H 0.07 -0.23 7.48 -2.39 -0.02 -0.24 16 40 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 41 H 0.05 0.08 8.14 -2.38 -0.02 0.06 16 42 H 0.05 0.09 7.97 -2.39 -0.02 0.07 16 43 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 44 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.07 -0.22 7.79 -2.39 -0.02 -0.24 16 46 H 0.05 0.18 7.96 -2.39 -0.02 0.16 16 47 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.06 0.04 7.80 -2.39 -0.02 0.02 16 49 H 0.16 -0.71 6.29 -2.91 -0.02 -0.73 16 50 H 0.15 -0.49 4.88 -2.91 -0.01 -0.50 16 51 H 0.10 0.50 7.83 -2.39 -0.02 0.48 16 52 H 0.39 -1.02 8.70 -74.06 -0.64 -1.67 16 Total: 0.00 -15.16 410.21 4.80 -10.35 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: 0.96 Total: -5.26 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 6.45 Total: 7.91 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -4.94 Total: -11.35 kcal Atomic # 14 Polarization: -3.99 SS G_CDS: 2.33 Total: -1.66 kcal Total: -15.16 4.80 -10.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_197680_10264010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.049 kcal (2) G-P(sol) polarization free energy of solvation -15.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds