Wall clock time and date at job start Mon Mar 8 2021 14:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99817 * 2 1 4 4 C 1.38746 * 120.02575 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.97779 * 359.97438 * 4 3 2 6 6 O 1.42905 * 109.47271 * 75.02026 * 5 4 3 7 7 Si 1.86294 * 109.47350 * 195.02269 * 5 4 3 8 8 C 1.38205 * 120.05454 * 180.02562 * 4 3 2 9 9 C 1.38155 * 120.10454 * 359.97438 * 8 4 3 10 10 C 1.38793 * 120.05991 * 0.02562 * 9 8 4 11 11 O 1.35891 * 120.02935 * 180.02562 * 10 9 8 12 12 C 1.42896 * 117.00195 * 359.97438 * 11 10 9 13 13 C 1.52997 * 109.47563 * 180.02562 * 12 11 10 14 14 H 1.09008 * 112.84798 * 45.32915 * 13 12 11 15 15 C 1.53775 * 113.61869 * 176.52505 * 13 12 11 16 16 C 1.53785 * 87.08133 * 139.98300 * 15 13 12 17 17 H 1.09004 * 113.61298 * 89.12102 * 16 15 13 18 18 O 1.42900 * 113.61699 * 219.93877 * 16 15 13 19 19 C 1.53782 * 113.61779 * 274.13869 * 13 12 11 20 20 C 1.38619 * 119.94068 * 359.97438 * 10 9 8 21 21 H 1.08993 * 109.47619 * 300.00146 * 1 2 3 22 22 H 1.09002 * 109.47029 * 60.00284 * 1 2 3 23 23 H 1.09004 * 109.46666 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47226 * 315.02568 * 5 4 3 25 25 H 0.96699 * 113.99409 * 59.99891 * 6 5 4 26 26 H 1.48502 * 109.99967 * 58.68378 * 7 5 4 27 27 H 1.48508 * 110.00062 * 180.02562 * 7 5 4 28 28 H 1.07995 * 119.94706 * 179.72255 * 8 4 3 29 29 H 1.08005 * 119.97145 * 180.02562 * 9 8 4 30 30 H 1.09006 * 109.47119 * 300.00176 * 12 11 10 31 31 H 1.08998 * 109.47126 * 60.00316 * 12 11 10 32 32 H 1.09003 * 113.62011 * 254.52927 * 15 13 12 33 33 H 1.09006 * 113.61141 * 25.43727 * 15 13 12 34 34 H 0.96691 * 114.00384 * 180.02562 * 18 16 15 35 35 H 1.09003 * 113.60687 * 334.56702 * 19 13 12 36 36 H 1.09002 * 113.61355 * 105.46312 * 19 13 12 37 37 H 1.07999 * 120.05250 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4315 1.2842 -0.0005 5 6 4.2524 0.0204 -0.0005 6 8 4.2193 -0.5691 -1.3019 7 14 6.0134 0.4237 0.4540 8 6 4.0595 2.5153 0.0000 9 6 3.3097 3.6757 0.0005 10 6 1.9234 3.6077 0.0011 11 8 1.1866 4.7495 0.0011 12 6 1.9045 5.9850 0.0011 13 6 0.9136 7.1507 0.0017 14 1 0.1017 7.0157 0.7164 15 6 1.5862 8.5310 0.0872 16 6 0.5408 9.0162 -0.9310 17 1 -0.3740 9.3917 -0.4723 18 8 1.0713 9.9033 -1.9177 19 6 0.4366 7.5546 -1.4033 20 6 1.2913 2.3741 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.8409 -0.6801 0.7261 25 1 4.5711 -0.0003 -2.0003 26 1 6.0582 1.0663 1.7920 27 1 6.8335 -0.8143 0.4569 28 1 5.1380 2.5704 0.0041 29 1 3.8027 4.6367 0.0005 30 1 2.5314 6.0410 0.8911 31 1 2.5312 6.0410 -0.8889 32 1 1.4939 9.0019 1.0658 33 1 2.6069 8.5437 -0.2953 34 1 0.4186 10.2122 -2.5607 35 1 1.1424 7.2998 -2.1940 36 1 -0.5825 7.2384 -1.6262 37 1 0.2127 2.3190 0.0005 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_197680_11354858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:30:06 Heat of formation + Delta-G solvation = -101.158926 kcal Electronic energy + Delta-G solvation = -20256.815163 eV Core-core repulsion = 16967.599058 eV Total energy + Delta-G solvation = -3289.216106 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73395 -40.64880 -39.63775 -38.33569 -36.98145 -35.97140 -32.28657 -31.27558 -29.33916 -28.35915 -26.74966 -26.19492 -24.18239 -22.97543 -22.25839 -20.62080 -19.79380 -18.66155 -18.20997 -17.60805 -17.26997 -17.14108 -16.79680 -16.46606 -16.22384 -15.99014 -15.64120 -15.16523 -14.94891 -14.55496 -14.35538 -14.06310 -13.71929 -13.45383 -13.42027 -12.84249 -12.74671 -12.56584 -12.46304 -12.24132 -12.03928 -11.86670 -11.83397 -11.58224 -11.20169 -10.73734 -10.36142 -9.70095 -9.10194 -5.01161 0.19364 0.30351 1.33227 1.66342 1.96804 1.98851 2.31750 2.56572 3.30252 3.46696 3.55845 3.60108 3.69620 3.79919 3.85321 3.94759 4.04626 4.10283 4.15384 4.25529 4.28097 4.30247 4.36467 4.40971 4.53002 4.60334 4.65218 4.71129 4.76574 4.80391 4.98795 5.02059 5.13075 5.23231 5.26301 5.37203 5.51098 6.20900 6.37683 6.84060 6.87062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.173 3.827 4 C -0.205 4.205 5 C -0.064 4.064 6 O -0.557 6.557 7 Si 0.788 3.212 8 C -0.032 4.032 9 C -0.242 4.242 10 C 0.166 3.834 11 O -0.324 6.324 12 C 0.066 3.934 13 C -0.106 4.106 14 H 0.106 0.894 15 C -0.119 4.119 16 C 0.073 3.927 17 H 0.096 0.904 18 O -0.581 6.581 19 C -0.163 4.163 20 C -0.258 4.258 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.115 0.885 24 H 0.089 0.911 25 H 0.392 0.608 26 H -0.283 1.283 27 H -0.299 1.299 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 4.796 -1.096 4.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.237 6.237 3 C 0.126 3.874 4 C -0.207 4.207 5 C -0.173 4.173 6 O -0.365 6.365 7 Si 0.693 3.307 8 C -0.049 4.049 9 C -0.260 4.260 10 C 0.119 3.881 11 O -0.238 6.238 12 C -0.008 4.008 13 C -0.124 4.124 14 H 0.124 0.876 15 C -0.156 4.156 16 C 0.014 3.986 17 H 0.114 0.886 18 O -0.389 6.389 19 C -0.201 4.201 20 C -0.278 4.278 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.134 0.866 24 H 0.107 0.893 25 H 0.241 0.759 26 H -0.210 1.210 27 H -0.228 1.228 28 H 0.184 0.816 29 H 0.175 0.825 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.245 0.755 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.179 3.915 0.120 3.921 hybrid contribution -1.543 -0.181 -0.045 1.554 sum -1.364 3.734 0.076 3.976 Atomic orbital electron populations 1.23329 0.76695 1.05411 1.02204 1.86153 1.23153 1.26553 1.87836 1.18701 0.91857 0.83864 0.92935 1.19786 0.91255 0.96722 1.12902 1.25084 1.10013 0.93590 0.88593 1.86490 1.87464 1.45575 1.16943 0.93992 0.73027 0.81005 0.82705 1.20883 1.00454 0.89770 0.93795 1.21407 0.91995 1.00852 1.11780 1.18822 0.90514 0.85871 0.92861 1.86042 1.36635 1.13169 1.87917 1.23037 0.94846 0.80140 1.02822 1.22299 0.98994 0.92224 0.98923 0.87629 1.23067 0.99555 0.93389 0.99636 1.23442 0.97343 0.87910 0.89925 0.88590 1.86474 1.41703 1.66260 1.44481 1.23775 1.02486 0.97016 0.96820 1.20535 1.01136 0.89898 1.16208 0.91786 0.91761 0.86648 0.89329 0.75901 1.21010 1.22758 0.81627 0.82544 0.90256 0.90626 0.89305 0.89063 0.75522 0.89748 0.90806 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.12 16 2 O -0.32 -2.60 9.82 -92.47 -0.91 -3.51 16 3 C 0.17 1.22 6.66 22.49 0.15 1.37 16 4 C -0.21 -0.87 5.27 -19.75 -0.10 -0.97 16 5 C -0.06 -0.26 2.37 71.24 0.17 -0.09 16 6 O -0.56 -2.76 12.88 -148.98 -1.92 -4.68 16 7 Si 0.79 -0.46 29.91 68.60 2.05 1.60 16 8 C -0.03 0.02 8.65 22.24 0.19 0.21 16 9 C -0.24 -0.01 9.04 22.38 0.20 0.19 16 10 C 0.17 0.66 6.68 22.49 0.15 0.81 16 11 O -0.32 -1.06 10.13 -92.32 -0.94 -1.99 16 12 C 0.07 -0.16 4.56 71.98 0.33 0.17 16 13 C -0.11 0.34 4.00 -10.27 -0.04 0.30 16 14 H 0.11 -0.35 8.14 -2.38 -0.02 -0.37 16 15 C -0.12 0.42 7.48 31.12 0.23 0.66 16 16 C 0.07 -0.20 5.21 31.18 0.16 -0.04 16 17 H 0.10 -0.52 8.14 -2.38 -0.02 -0.54 16 18 O -0.58 0.00 13.68 -148.98 -2.04 -2.03 16 19 C -0.16 0.40 7.48 31.18 0.23 0.64 16 20 C -0.26 -1.43 8.97 22.46 0.20 -1.23 16 21 H 0.06 -0.07 7.66 -2.39 -0.02 -0.09 16 22 H 0.06 -0.06 7.66 -2.39 -0.02 -0.08 16 23 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 24 H 0.09 0.70 7.82 -2.39 -0.02 0.68 16 25 H 0.39 -1.60 8.70 -74.06 -0.64 -2.24 16 26 H -0.28 -1.07 7.11 99.48 0.71 -0.37 16 27 H -0.30 -2.06 7.11 99.48 0.71 -1.35 16 28 H 0.17 -1.22 5.11 -2.91 -0.01 -1.24 16 29 H 0.16 -0.80 6.29 -2.91 -0.02 -0.82 16 30 H 0.08 -0.37 7.66 -2.38 -0.02 -0.39 16 31 H 0.08 -0.29 7.39 -2.39 -0.02 -0.31 16 32 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.09 -0.25 8.10 -2.38 -0.02 -0.27 16 34 H 0.39 -3.05 9.12 -74.06 -0.68 -3.72 16 35 H 0.08 -0.08 7.92 -2.39 -0.02 -0.10 16 36 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.14 0.51 6.30 -2.91 -0.02 0.49 16 Total: 0.00 -18.29 307.28 -0.94 -19.23 By element: Atomic # 1 Polarization: -11.56 SS G_CDS: -0.18 Total: -11.74 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 2.99 Total: 3.13 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -5.80 Total: -12.21 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.05 Total: 1.60 kcal Total: -18.29 -0.94 -19.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_197680_11354858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.931 kcal (2) G-P(sol) polarization free energy of solvation -18.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds