Wall clock time and date at job start Mon Mar 8 2021 13:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35892 * 117.00214 * 2 1 4 4 C 1.38754 * 120.02960 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.97270 * 359.97438 * 4 3 2 6 6 O 1.42901 * 109.46892 * 75.00214 * 5 4 3 7 7 Si 1.86301 * 109.47198 * 195.00189 * 5 4 3 8 8 C 1.38198 * 120.05153 * 179.97438 * 4 3 2 9 9 C 1.38150 * 120.11352 * 359.78972 * 8 4 3 10 10 C 1.38793 * 120.05293 * 0.46237 * 9 8 4 11 11 O 1.35901 * 120.02862 * 179.79342 * 10 9 8 12 12 C 1.42902 * 116.99818 * 359.72467 * 11 10 9 13 13 C 1.52999 * 109.47107 * 180.02562 * 12 11 10 14 14 H 1.08993 * 109.47039 * 179.97438 * 13 12 11 15 15 O 1.42973 * 109.46745 * 299.99978 * 13 12 11 16 16 C 1.43090 * 113.76678 * 178.79789 * 15 13 12 17 17 C 1.53287 * 109.02819 * 302.08446 * 16 15 13 18 18 H 1.09002 * 109.49230 * 294.61038 * 17 16 15 19 19 N 1.46494 * 109.67014 * 174.22266 * 17 16 15 20 20 C 1.34532 * 124.46054 * 300.30192 * 19 17 16 21 21 O 1.21443 * 125.70489 * 359.97438 * 20 19 17 22 22 C 1.47809 * 108.58090 * 179.84682 * 20 19 17 23 23 C 1.40948 * 105.87901 * 0.40112 * 22 20 19 24 24 C 1.38567 * 119.81802 * 179.76440 * 23 22 20 25 25 C 1.38613 * 119.72213 * 359.96272 * 24 23 22 26 26 C 1.38227 * 120.46144 * 0.03505 * 25 24 23 27 27 C 1.38570 * 134.29916 * 180.09127 * 22 20 19 28 28 C 1.34524 * 124.46519 * 120.59875 * 19 17 16 29 29 O 1.21453 * 125.70723 * 0.03564 * 28 19 17 30 30 C 1.53259 * 108.82937 * 54.36474 * 17 16 15 31 31 O 1.42967 * 109.47408 * 59.99374 * 13 12 11 32 32 C 1.38610 * 119.94580 * 359.51480 * 10 9 8 33 33 H 1.08998 * 109.46699 * 299.99619 * 1 2 3 34 34 H 1.08998 * 109.47253 * 59.99748 * 1 2 3 35 35 H 1.09006 * 109.47169 * 179.97438 * 1 2 3 36 36 H 1.08999 * 109.47133 * 315.00245 * 5 4 3 37 37 H 0.96698 * 114.00380 * 60.00465 * 6 5 4 38 38 H 1.48502 * 109.99867 * 58.68005 * 7 5 4 39 39 H 1.48502 * 110.00259 * 180.02562 * 7 5 4 40 40 H 1.08007 * 119.94094 * 180.02562 * 8 4 3 41 41 H 1.08001 * 119.97528 * 180.25288 * 9 8 4 42 42 H 1.08998 * 109.47044 * 60.00069 * 12 11 10 43 43 H 1.08998 * 109.46673 * 299.99850 * 12 11 10 44 44 H 1.08996 * 109.56328 * 61.86993 * 16 15 13 45 45 H 1.09006 * 109.55278 * 182.08230 * 16 15 13 46 46 H 1.08003 * 120.14109 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.76642 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.77358 * 180.02562 * 26 25 24 49 49 H 1.07998 * 120.14044 * 0.31760 * 27 22 20 50 50 H 1.09002 * 109.55872 * 185.74276 * 30 17 16 51 51 H 1.09000 * 109.55612 * 65.52687 * 30 17 16 52 52 H 1.07997 * 120.06059 * 180.27347 * 32 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4316 1.2841 -0.0005 5 6 4.2523 0.0202 -0.0005 6 8 4.2188 -0.5694 -1.3018 7 14 6.0136 0.4235 0.4534 8 6 4.0595 2.5152 -0.0011 9 6 3.3099 3.6756 -0.0055 10 6 1.9236 3.6076 0.0004 11 8 1.1867 4.7494 0.0003 12 6 1.9048 5.9849 0.0002 13 6 0.9139 7.1507 0.0007 14 1 1.4616 8.0930 0.0011 15 8 0.0913 7.0774 -1.1663 16 6 -0.8917 8.1143 -1.2450 17 6 -1.7813 8.0552 0.0019 18 1 -2.3474 7.1238 0.0011 19 7 -2.7038 9.1932 0.0038 20 6 -2.3216 10.4831 0.0047 21 8 -1.1747 10.8824 0.0045 22 6 -3.5310 11.3328 0.0028 23 6 -4.6259 10.4451 0.0103 24 6 -5.9182 10.9451 0.0155 25 6 -6.1248 12.3158 0.0141 26 6 -5.0511 13.1863 0.0068 27 6 -3.7528 12.7006 0.0011 28 6 -4.0448 9.0861 0.0106 29 8 -4.6728 8.0466 0.0168 30 6 -0.8909 8.1139 1.2479 31 8 0.0921 7.0772 1.1683 32 6 1.2914 2.3741 0.0004 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 -0.3634 -1.0277 -0.0005 36 1 3.8410 -0.6801 0.7264 37 1 4.5705 -0.0009 -2.0005 38 1 6.0588 1.0665 1.7912 39 1 6.8337 -0.8145 0.4563 40 1 5.1382 2.5701 -0.0019 41 1 3.8029 4.6365 -0.0100 42 1 2.5315 6.0408 -0.8898 43 1 2.5315 6.0409 0.8901 44 1 -0.3964 9.0840 -1.2924 45 1 -1.5014 7.9720 -2.1374 46 1 -6.7610 10.2697 0.0209 47 1 -7.1317 12.7063 0.0177 48 1 -5.2249 14.2522 0.0062 49 1 -2.9177 13.3854 -0.0042 50 1 -1.5012 7.9704 2.1396 51 1 -0.3954 9.0836 1.2970 52 1 0.2128 2.3190 0.0005 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_197680_13594088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:39:34 Heat of formation + Delta-G solvation = -153.512786 kcal Electronic energy + Delta-G solvation = -41312.043984 eV Core-core repulsion = 35790.426937 eV Total energy + Delta-G solvation = -5521.617048 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.149 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.73184 -41.77640 -41.24782 -40.05625 -39.94602 -39.45101 -38.34880 -37.27046 -37.09951 -36.92686 -34.58106 -32.52106 -32.18028 -31.37872 -31.26292 -29.72330 -28.38718 -27.51829 -26.37519 -26.29437 -25.48211 -24.42252 -23.50816 -23.09051 -22.58837 -22.12725 -21.03523 -19.96662 -19.15142 -19.00262 -18.83604 -18.38051 -17.93199 -17.70919 -17.67604 -17.37110 -17.05929 -17.01154 -16.79443 -16.53964 -16.44094 -16.29449 -16.16489 -15.93119 -15.67804 -15.50914 -15.40890 -15.35413 -15.11377 -15.08343 -14.79774 -14.69921 -14.44185 -14.22064 -13.83040 -13.79011 -13.60514 -13.51409 -13.30058 -12.79257 -12.74147 -12.69966 -12.64318 -12.34986 -12.25744 -12.24105 -12.06810 -11.83911 -11.72508 -11.65390 -11.61894 -10.97782 -10.88267 -10.35079 -10.27621 -10.26380 -9.69920 -9.09420 -5.00227 -1.13625 -0.07867 0.20560 0.31301 0.84895 0.86559 1.34338 1.59121 1.67989 1.92497 2.00067 2.18864 2.28354 2.30601 2.42430 2.55473 2.57780 3.04682 3.13037 3.19973 3.46037 3.52028 3.59600 3.65842 3.69546 3.81671 3.86037 3.90289 4.02454 4.02467 4.05111 4.09881 4.13097 4.13276 4.17278 4.18939 4.22180 4.25314 4.30770 4.38350 4.39990 4.43363 4.46489 4.56276 4.60173 4.64849 4.78821 4.85949 5.02545 5.16733 5.23022 5.23508 5.26667 5.31966 5.39750 5.52479 5.63767 5.72569 5.89556 6.19036 6.31843 6.36261 6.85443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.323 6.323 3 C 0.172 3.828 4 C -0.205 4.205 5 C -0.066 4.066 6 O -0.558 6.558 7 Si 0.792 3.208 8 C -0.030 4.030 9 C -0.239 4.239 10 C 0.165 3.835 11 O -0.315 6.315 12 C 0.069 3.931 13 C 0.235 3.765 14 H 0.110 0.890 15 O -0.385 6.385 16 C 0.052 3.948 17 C 0.076 3.924 18 H 0.113 0.887 19 N -0.569 5.569 20 C 0.577 3.423 21 O -0.479 6.479 22 C -0.159 4.159 23 C -0.160 4.160 24 C -0.045 4.045 25 C -0.084 4.084 26 C -0.083 4.083 27 C -0.041 4.041 28 C 0.575 3.425 29 O -0.491 6.491 30 C 0.052 3.948 31 O -0.387 6.387 32 C -0.260 4.260 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.392 0.608 38 H -0.282 1.282 39 H -0.300 1.300 40 H 0.171 0.829 41 H 0.165 0.835 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.152 0.848 47 H 0.176 0.824 48 H 0.177 0.823 49 H 0.157 0.843 50 H 0.110 0.890 51 H 0.078 0.922 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 11.931 -1.383 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.236 6.236 3 C 0.126 3.874 4 C -0.207 4.207 5 C -0.174 4.174 6 O -0.366 6.366 7 Si 0.697 3.303 8 C -0.047 4.047 9 C -0.257 4.257 10 C 0.119 3.881 11 O -0.229 6.229 12 C -0.006 4.006 13 C 0.141 3.859 14 H 0.127 0.873 15 O -0.305 6.305 16 C -0.025 4.025 17 C -0.026 4.026 18 H 0.131 0.869 19 N -0.314 5.314 20 C 0.368 3.632 21 O -0.352 6.352 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.064 4.064 25 C -0.102 4.102 26 C -0.101 4.101 27 C -0.060 4.060 28 C 0.366 3.634 29 O -0.364 6.364 30 C -0.025 4.025 31 O -0.306 6.306 32 C -0.279 4.279 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.241 0.759 38 H -0.209 1.209 39 H -0.228 1.228 40 H 0.187 0.813 41 H 0.183 0.817 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.096 0.904 45 H 0.130 0.870 46 H 0.170 0.830 47 H 0.193 0.807 48 H 0.195 0.805 49 H 0.175 0.825 50 H 0.128 0.872 51 H 0.096 0.904 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.958 10.406 -0.496 10.462 hybrid contribution -1.173 -0.339 0.310 1.260 sum -2.131 10.067 -0.186 10.291 Atomic orbital electron populations 1.23305 0.76837 1.05367 1.02022 1.86140 1.22991 1.26623 1.87877 1.18710 0.91944 0.83700 0.93044 1.19807 0.91054 0.96912 1.12894 1.25128 1.10218 0.93541 0.88547 1.86488 1.87496 1.45595 1.16971 0.93987 0.72730 0.80989 0.82600 1.20904 1.00553 0.89643 0.93625 1.21434 0.91485 1.01185 1.11630 1.18850 0.90716 0.85616 0.92909 1.86179 1.35915 1.12809 1.87958 1.23225 0.92891 0.78920 1.05548 1.24025 0.87556 0.98879 0.75441 0.87294 1.88238 1.47818 1.51785 1.42625 1.22994 0.90186 0.92145 0.97167 1.22554 0.91849 0.89193 0.99047 0.86901 1.46462 1.08427 1.08247 1.68217 1.18715 0.89098 0.81769 0.73593 1.90787 1.21843 1.77648 1.44873 1.20450 0.91897 0.95843 1.08036 1.20422 0.96274 0.91469 1.08183 1.21160 0.94329 0.97070 0.93818 1.21957 1.02040 0.91322 0.94832 1.21977 0.90595 1.02809 0.94727 1.21175 0.99592 0.91684 0.93550 1.18818 0.81256 0.89823 0.73477 1.90827 1.65391 1.34965 1.45176 1.22991 0.90190 0.92142 0.97208 1.88236 1.47891 1.51794 1.42693 1.20498 1.00906 0.90177 1.16314 0.92061 0.91985 0.86503 0.89481 0.75878 1.20921 1.22809 0.81267 0.81732 0.86743 0.87075 0.90431 0.87040 0.83017 0.80676 0.80536 0.82492 0.87183 0.90417 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.18 16 2 O -0.32 -3.26 9.82 -92.33 -0.91 -4.17 16 3 C 0.17 1.54 6.66 22.49 0.15 1.69 16 4 C -0.21 -1.08 5.27 -19.75 -0.10 -1.18 16 5 C -0.07 -0.32 2.37 71.23 0.17 -0.15 16 6 O -0.56 -3.25 12.88 -148.98 -1.92 -5.17 16 7 Si 0.79 -0.22 29.91 68.60 2.05 1.84 16 8 C -0.03 0.01 8.65 22.24 0.19 0.20 16 9 C -0.24 -0.05 9.04 22.38 0.20 0.16 16 10 C 0.17 0.99 6.68 22.49 0.15 1.14 16 11 O -0.32 -2.18 9.92 -72.85 -0.72 -2.91 16 12 C 0.07 -0.05 4.83 71.98 0.35 0.29 16 13 C 0.24 0.43 3.59 71.98 0.26 0.69 16 14 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 15 O -0.39 -2.08 10.43 -121.89 -1.27 -3.35 16 16 C 0.05 0.16 6.33 72.08 0.46 0.62 16 17 C 0.08 0.32 3.07 45.18 0.14 0.46 16 18 H 0.11 0.82 7.60 -2.39 -0.02 0.80 16 19 N -0.57 -2.19 2.53 -739.53 -1.87 -4.06 16 20 C 0.58 1.78 7.35 86.81 0.64 2.42 16 21 O -0.48 -2.82 15.17 -3.54 -0.05 -2.88 16 22 C -0.16 0.09 6.40 -20.00 -0.13 -0.04 16 23 C -0.16 -0.07 6.40 -20.00 -0.13 -0.19 16 24 C -0.05 0.22 10.09 22.44 0.23 0.45 16 25 C -0.08 0.86 10.04 22.36 0.22 1.08 16 26 C -0.08 0.90 10.04 22.36 0.22 1.12 16 27 C -0.04 0.26 10.09 22.44 0.23 0.49 16 28 C 0.57 3.19 8.02 86.81 0.70 3.88 16 29 O -0.49 -5.62 17.44 -3.57 -0.06 -5.68 16 30 C 0.05 0.17 6.32 72.07 0.46 0.63 16 31 O -0.39 -2.19 10.43 -121.89 -1.27 -3.46 16 32 C -0.26 -2.17 8.97 22.46 0.20 -1.96 16 33 H 0.06 0.13 7.66 -2.39 -0.02 0.11 16 34 H 0.06 0.14 7.66 -2.39 -0.02 0.12 16 35 H 0.12 -0.04 8.14 -2.38 -0.02 -0.06 16 36 H 0.09 0.78 7.82 -2.39 -0.02 0.76 16 37 H 0.39 -1.32 8.70 -74.06 -0.64 -1.96 16 38 H -0.28 -1.13 7.11 99.48 0.71 -0.42 16 39 H -0.30 -2.16 7.11 99.48 0.71 -1.45 16 40 H 0.17 -1.30 5.12 -2.91 -0.01 -1.32 16 41 H 0.17 -1.11 6.29 -2.91 -0.02 -1.13 16 42 H 0.11 -0.65 7.65 -2.39 -0.02 -0.67 16 43 H 0.11 -0.57 7.67 -2.39 -0.02 -0.59 16 44 H 0.08 0.19 6.67 -2.39 -0.02 0.17 16 45 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 46 H 0.15 -1.05 8.06 -2.91 -0.02 -1.08 16 47 H 0.18 -2.85 8.06 -2.91 -0.02 -2.87 16 48 H 0.18 -2.99 8.06 -2.91 -0.02 -3.01 16 49 H 0.16 -1.44 8.06 -2.91 -0.02 -1.47 16 50 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 51 H 0.08 0.20 6.67 -2.39 -0.02 0.19 16 52 H 0.13 1.06 6.30 -2.91 -0.02 1.04 16 Total: 0.00 -29.73 433.42 0.09 -29.65 By element: Atomic # 1 Polarization: -13.18 SS G_CDS: 0.40 Total: -12.78 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 5.71 Total: 12.97 kcal Atomic # 7 Polarization: -2.19 SS G_CDS: -1.87 Total: -4.06 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -6.21 Total: -27.62 kcal Atomic # 14 Polarization: -0.22 SS G_CDS: 2.05 Total: 1.84 kcal Total: -29.73 0.09 -29.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_197680_13594088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.864 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds