Wall clock time and date at job start Mon Mar 8 2021 14:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35898 * 117.00071 * 2 1 4 4 C 1.38613 * 120.02513 * 0.23478 * 3 2 1 5 5 C 1.38658 * 119.88962 * 180.27737 * 4 3 2 6 6 O 1.35902 * 120.02365 * 179.76802 * 5 4 3 7 7 C 1.42906 * 116.99507 * 179.71806 * 6 5 4 8 8 O 1.42905 * 109.46854 * 75.00277 * 7 6 5 9 9 Si 1.63101 * 113.99905 * 179.97438 * 8 7 6 10 10 C 1.86306 * 109.46968 * 299.99867 * 9 8 7 11 11 C 1.86297 * 109.47197 * 59.99753 * 9 8 7 12 12 C 1.86302 * 109.47016 * 179.97438 * 9 8 7 13 13 C 1.53000 * 109.46869 * 60.00213 * 12 9 8 14 14 C 1.52998 * 109.46788 * 179.97438 * 12 9 8 15 15 C 1.52998 * 109.46886 * 299.99828 * 12 9 8 16 16 C 1.38748 * 119.94766 * 359.48508 * 5 4 3 17 17 C 1.38197 * 120.05143 * 0.26164 * 16 5 4 18 18 C 1.38158 * 120.11025 * 359.97438 * 17 16 5 19 19 C 1.50702 * 119.97006 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.47142 * 105.00149 * 19 18 17 21 21 Si 1.86293 * 109.47479 * 344.99906 * 19 18 17 22 22 H 1.48500 * 109.46837 * 60.00128 * 21 19 18 23 23 H 1.48501 * 109.47323 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47394 * 300.00395 * 21 19 18 25 25 H 1.09008 * 109.47005 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47456 * 299.99479 * 1 2 3 27 27 H 1.09000 * 109.47333 * 60.00165 * 1 2 3 28 28 H 1.08000 * 120.05922 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47490 * 315.00136 * 7 6 5 30 30 H 1.09001 * 109.47232 * 194.99490 * 7 6 5 31 31 H 1.08998 * 109.46973 * 59.99630 * 10 9 8 32 32 H 1.09001 * 109.46903 * 180.02562 * 10 9 8 33 33 H 1.08999 * 109.46903 * 299.99734 * 10 9 8 34 34 H 1.09005 * 109.47355 * 60.00017 * 11 9 8 35 35 H 1.08997 * 109.47216 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.47207 * 300.00013 * 11 9 8 37 37 H 1.08997 * 109.47412 * 59.99882 * 13 12 9 38 38 H 1.08999 * 109.46454 * 180.02562 * 13 12 9 39 39 H 1.09006 * 109.47253 * 299.99285 * 13 12 9 40 40 H 1.08997 * 109.47329 * 60.00309 * 14 12 9 41 41 H 1.08999 * 109.46825 * 180.02562 * 14 12 9 42 42 H 1.08997 * 109.47384 * 300.00052 * 14 12 9 43 43 H 1.08997 * 109.47329 * 60.00388 * 15 12 9 44 44 H 1.09009 * 109.46785 * 180.02562 * 15 12 9 45 45 H 1.08997 * 109.47366 * 299.99774 * 15 12 9 46 46 H 1.08000 * 119.97610 * 180.27870 * 16 5 4 47 47 H 1.08001 * 119.94682 * 179.97438 * 17 16 5 48 48 H 1.08999 * 109.46898 * 224.99832 * 19 18 17 49 49 H 0.96698 * 113.99963 * 300.00149 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3737 0.0049 5 6 1.9239 3.6076 -0.0009 6 8 1.1869 4.7495 -0.0009 7 6 1.9049 5.9850 -0.0008 8 8 2.4457 6.2217 -1.3022 9 14 3.2910 7.6110 -1.4268 10 6 2.1809 9.0516 -1.0224 11 6 4.7222 7.5762 -0.2347 12 6 3.9358 7.7919 -3.1653 13 6 2.7607 7.8203 -4.1446 14 6 4.7281 9.0955 -3.2822 15 6 4.8475 6.6088 -3.4966 16 6 3.3097 3.6757 -0.0009 17 6 4.0596 2.5149 -0.0004 18 6 3.4318 1.2842 0.0004 19 6 4.2527 0.0204 0.0015 20 8 4.2196 -0.5680 1.3033 21 14 6.0138 0.4233 -0.4533 22 1 6.5743 1.3784 0.5361 23 1 6.8225 -0.8222 -0.4529 24 1 6.0483 1.0348 -1.8061 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2129 2.3188 0.0092 29 1 2.7158 5.9340 0.7259 30 1 1.2292 6.7980 0.2651 31 1 1.8040 8.9455 -0.0052 32 1 2.7457 9.9801 -1.1061 33 1 1.3436 9.0720 -1.7199 34 1 5.3717 6.7333 -0.4712 35 1 5.2868 8.5048 -0.3176 36 1 4.3453 7.4701 0.7826 37 1 2.1111 8.6632 -3.9085 38 1 3.1380 7.9257 -5.1618 39 1 2.1958 6.8918 -4.0615 40 1 5.5653 9.0757 -2.5844 41 1 5.1050 9.2015 -4.2994 42 1 4.0783 9.9381 -3.0462 43 1 4.2827 5.6803 -3.4134 44 1 5.2252 6.7149 -4.5137 45 1 5.6847 6.5886 -2.7989 46 1 3.8027 4.6366 -0.0008 47 1 5.1382 2.5699 -0.0008 48 1 3.8413 -0.6806 -0.7247 49 1 4.5714 0.0013 2.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_197680_14468166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:04:27 Heat of formation + Delta-G solvation = -174.361093 kcal Electronic energy + Delta-G solvation = -27381.658938 eV Core-core repulsion = 23626.212729 eV Total energy + Delta-G solvation = -3755.446209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71287 -40.27198 -38.40602 -37.44063 -36.85451 -36.55273 -32.14516 -31.24664 -29.45689 -29.09430 -28.32150 -27.85411 -27.40682 -27.29967 -25.89609 -23.35990 -22.42941 -20.49760 -19.95505 -18.57123 -18.34546 -17.85508 -17.34144 -16.98367 -16.75466 -16.36647 -15.95121 -15.78127 -15.37696 -15.20199 -15.01236 -14.87255 -14.79792 -14.69844 -14.35112 -14.14714 -13.84473 -13.53643 -13.51490 -13.38264 -13.19769 -12.98188 -12.95038 -12.92252 -12.72765 -12.49254 -12.40764 -12.17841 -12.04235 -11.90690 -11.80819 -11.72766 -11.61287 -11.59813 -11.43861 -10.41831 -10.31008 -10.10078 -9.71532 -9.08521 0.19266 0.32600 1.20017 1.31541 1.44144 1.55598 1.67952 1.93361 2.05482 2.08575 2.33162 2.51112 2.59806 3.62446 3.68421 3.77187 3.89391 4.04291 4.08873 4.10394 4.11649 4.17450 4.28386 4.36013 4.40732 4.43669 4.51928 4.69042 4.72009 4.73060 4.73691 4.77243 4.77553 4.80255 4.81800 4.98417 5.03465 5.06977 5.07746 5.08049 5.23011 5.26453 5.27511 5.35517 5.38822 5.44626 5.49671 5.58960 5.64282 6.17390 6.38135 6.80012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.318 6.318 3 C 0.178 3.822 4 C -0.253 4.253 5 C 0.165 3.835 6 O -0.312 6.312 7 C 0.233 3.767 8 O -0.663 6.663 9 Si 1.319 2.681 10 C -0.519 4.519 11 C -0.519 4.519 12 C -0.383 4.383 13 C -0.138 4.138 14 C -0.141 4.141 15 C -0.138 4.138 16 C -0.231 4.231 17 C -0.055 4.055 18 C -0.200 4.200 19 C -0.068 4.068 20 O -0.553 6.553 21 Si 0.981 3.019 22 H -0.236 1.236 23 H -0.274 1.274 24 H -0.257 1.257 25 H 0.117 0.883 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.145 0.855 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.151 0.849 47 H 0.150 0.850 48 H 0.106 0.894 49 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 4.215 1.969 4.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.231 6.231 3 C 0.131 3.869 4 C -0.272 4.272 5 C 0.120 3.880 6 O -0.226 6.226 7 C 0.121 3.879 8 O -0.623 6.623 9 Si 1.451 2.549 10 C -0.622 4.622 11 C -0.622 4.622 12 C -0.425 4.425 13 C -0.195 4.195 14 C -0.198 4.198 15 C -0.195 4.195 16 C -0.250 4.250 17 C -0.072 4.072 18 C -0.201 4.201 19 C -0.178 4.178 20 O -0.359 6.359 21 Si 0.804 3.196 22 H -0.159 1.159 23 H -0.199 1.199 24 H -0.181 1.181 25 H 0.135 0.865 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.163 0.837 29 H 0.103 0.897 30 H 0.150 0.850 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.168 0.832 47 H 0.167 0.833 48 H 0.124 0.876 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.844 3.515 1.261 3.829 hybrid contribution -0.375 0.896 0.067 0.974 sum 0.469 4.411 1.328 4.631 Atomic orbital electron populations 1.23348 0.76694 1.05497 1.02211 1.86155 1.23086 1.26149 1.87724 1.18599 0.91590 0.83951 0.92739 1.20593 1.01339 0.89743 1.15566 1.18799 0.90371 0.86014 0.92814 1.86232 1.36214 1.13275 1.86888 1.23918 0.96162 0.84497 0.83339 1.85320 1.75178 1.65540 1.36251 0.76082 0.61191 0.53087 0.64527 1.27088 1.11787 1.17451 1.05836 1.27071 1.16777 1.05655 1.12659 1.25946 1.00492 0.98246 1.17843 1.21546 0.97352 1.01675 0.98910 1.21603 1.00078 0.95851 1.02250 1.21551 0.99217 0.97097 1.01636 1.21309 0.92275 1.00374 1.11020 1.20948 1.00602 0.90546 0.95152 1.19722 0.91514 0.96459 1.12380 1.24870 1.09569 0.94451 0.88901 1.86509 1.87273 1.45319 1.16837 0.85300 0.73830 0.79553 0.80904 1.15920 1.19919 1.18109 0.86514 0.91738 0.91813 0.83687 0.89699 0.84953 0.90390 0.89935 0.91166 0.90639 0.89724 0.90346 0.91929 0.93427 0.93028 0.91443 0.93266 0.91674 0.92969 0.93468 0.91601 0.83192 0.83288 0.87638 0.76610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.11 16 2 O -0.32 -2.19 9.82 -92.41 -0.91 -3.10 16 3 C 0.18 1.21 6.66 22.49 0.15 1.36 16 4 C -0.25 -1.46 8.97 22.46 0.20 -1.26 16 5 C 0.17 0.86 6.62 22.49 0.15 1.01 16 6 O -0.31 -1.26 10.40 -69.68 -0.72 -1.98 16 7 C 0.23 -0.59 5.42 113.37 0.61 0.03 16 8 O -0.66 0.39 8.03 -126.21 -1.01 -0.62 16 9 Si 1.32 -6.50 8.45 68.60 0.58 -5.92 16 10 C -0.52 2.58 8.50 113.37 0.96 3.55 16 11 C -0.52 3.18 8.50 113.37 0.96 4.14 16 12 C -0.38 0.65 0.53 -10.79 -0.01 0.65 16 13 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 14 C -0.14 0.41 7.85 71.98 0.56 0.97 16 15 C -0.14 0.03 7.85 71.98 0.56 0.60 16 16 C -0.23 -0.59 8.78 22.38 0.20 -0.39 16 17 C -0.05 -0.12 8.65 22.24 0.19 0.07 16 18 C -0.20 -0.98 5.27 -19.75 -0.10 -1.08 16 19 C -0.07 -0.24 2.38 71.24 0.17 -0.07 16 20 O -0.55 -2.54 12.88 -148.98 -1.92 -4.46 16 21 Si 0.98 0.42 25.49 68.60 1.75 2.17 16 22 H -0.24 0.56 6.73 99.48 0.67 1.23 16 23 H -0.27 -1.04 7.11 99.48 0.71 -0.33 16 24 H -0.26 -0.44 7.11 99.48 0.71 0.27 16 25 H 0.12 -0.43 8.14 -2.38 -0.02 -0.45 16 26 H 0.06 -0.12 7.65 -2.39 -0.02 -0.14 16 27 H 0.06 -0.11 7.67 -2.39 -0.02 -0.13 16 28 H 0.15 0.47 6.30 -2.91 -0.02 0.45 16 29 H 0.09 -0.61 5.77 -2.39 -0.01 -0.62 16 30 H 0.13 -1.06 7.21 -2.39 -0.02 -1.08 16 31 H 0.08 -0.54 7.48 -2.39 -0.02 -0.56 16 32 H 0.08 -0.46 7.79 -2.39 -0.02 -0.48 16 33 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 34 H 0.07 -0.43 7.79 -2.38 -0.02 -0.45 16 35 H 0.08 -0.56 7.79 -2.39 -0.02 -0.58 16 36 H 0.08 -0.62 7.48 -2.39 -0.02 -0.64 16 37 H 0.06 -0.09 7.80 -2.39 -0.02 -0.11 16 38 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.05 0.10 7.97 -2.38 -0.02 0.08 16 40 H 0.07 -0.34 7.79 -2.39 -0.02 -0.36 16 41 H 0.05 -0.06 8.14 -2.39 -0.02 -0.07 16 42 H 0.06 -0.30 7.79 -2.39 -0.02 -0.32 16 43 H 0.05 0.07 7.96 -2.39 -0.02 0.05 16 44 H 0.05 0.05 8.14 -2.38 -0.02 0.03 16 45 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 46 H 0.15 -0.28 5.85 -2.91 -0.02 -0.30 16 47 H 0.15 -0.34 4.88 -2.91 -0.01 -0.36 16 48 H 0.11 0.49 7.82 -2.39 -0.02 0.47 16 49 H 0.39 -1.10 8.70 -74.06 -0.64 -1.75 16 Total: 0.00 -14.29 387.29 5.06 -9.23 By element: Atomic # 1 Polarization: -7.52 SS G_CDS: 1.00 Total: -6.52 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 6.30 Total: 11.21 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -4.56 Total: -10.17 kcal Atomic # 14 Polarization: -6.08 SS G_CDS: 2.33 Total: -3.75 kcal Total: -14.29 5.06 -9.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_197680_14468166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.133 kcal (2) G-P(sol) polarization free energy of solvation -14.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds