Wall clock time and date at job start Mon Mar 8 2021 14:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35899 * 117.00008 * 2 1 4 4 C 1.38610 * 120.02701 * 179.72426 * 3 2 1 5 5 C 1.50698 * 120.05634 * 0.02562 * 4 3 2 6 6 O 1.42903 * 109.47265 * 54.93366 * 5 4 3 7 7 Si 1.86296 * 109.47083 * 294.93224 * 5 4 3 8 8 H 1.48493 * 109.47296 * 65.62149 * 7 5 4 9 9 H 1.48511 * 109.47050 * 185.61772 * 7 5 4 10 10 H 1.48496 * 109.47273 * 305.61717 * 7 5 4 11 11 C 1.38655 * 119.89091 * 179.81136 * 4 3 2 12 12 O 1.35898 * 120.03334 * 180.18330 * 11 4 3 13 13 C 1.42898 * 117.00243 * 180.23480 * 12 11 4 14 14 C 1.53006 * 109.46772 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46995 * 180.02562 * 14 13 12 16 16 O 1.42896 * 109.47144 * 180.02562 * 15 14 13 17 17 Si 1.63100 * 114.00079 * 179.97438 * 16 15 14 18 18 C 1.86303 * 109.47340 * 300.00465 * 17 16 15 19 19 C 1.86304 * 109.46836 * 60.00132 * 17 16 15 20 20 C 1.86299 * 109.47383 * 179.97438 * 17 16 15 21 21 C 1.53006 * 109.46702 * 60.00041 * 20 17 16 22 22 C 1.52992 * 109.47206 * 180.02562 * 20 17 16 23 23 C 1.52996 * 109.47201 * 300.00443 * 20 17 16 24 24 C 1.38752 * 119.94406 * 0.42234 * 11 4 3 25 25 C 1.38204 * 120.05619 * 359.80738 * 24 11 4 26 26 C 1.38153 * 120.10620 * 0.02562 * 25 24 11 27 27 H 1.09007 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47408 * 60.00045 * 1 2 3 29 29 H 1.09004 * 109.47482 * 299.99861 * 1 2 3 30 30 H 1.09002 * 109.47347 * 174.93317 * 5 4 3 31 31 H 0.96698 * 113.99862 * 65.39561 * 6 5 4 32 32 H 1.08993 * 109.47505 * 299.99718 * 13 12 11 33 33 H 1.09001 * 109.46747 * 60.00603 * 13 12 11 34 34 H 1.09002 * 109.47383 * 300.00118 * 14 13 12 35 35 H 1.09000 * 109.47204 * 59.99951 * 14 13 12 36 36 H 1.09002 * 109.47060 * 300.00204 * 15 14 13 37 37 H 1.09000 * 109.47277 * 59.99883 * 15 14 13 38 38 H 1.08996 * 109.47032 * 59.99544 * 18 17 16 39 39 H 1.08998 * 109.47278 * 180.02562 * 18 17 16 40 40 H 1.09002 * 109.46621 * 299.99550 * 18 17 16 41 41 H 1.09004 * 109.47241 * 59.99861 * 19 17 16 42 42 H 1.08997 * 109.47184 * 180.02562 * 19 17 16 43 43 H 1.08996 * 109.47209 * 300.00255 * 19 17 16 44 44 H 1.08995 * 109.47101 * 60.00620 * 21 20 17 45 45 H 1.09000 * 109.46514 * 180.02562 * 21 20 17 46 46 H 1.08997 * 109.47516 * 299.99946 * 21 20 17 47 47 H 1.08994 * 109.47562 * 59.99974 * 22 20 17 48 48 H 1.09004 * 109.47171 * 180.02562 * 22 20 17 49 49 H 1.09004 * 109.47050 * 299.99779 * 22 20 17 50 50 H 1.09008 * 109.47303 * 59.99432 * 23 20 17 51 51 H 1.08999 * 109.47645 * 179.97438 * 23 20 17 52 52 H 1.09003 * 109.47434 * 300.00118 * 23 20 17 53 53 H 1.08001 * 119.97279 * 179.78798 * 24 11 4 54 54 H 1.07994 * 119.95001 * 179.97438 * 25 24 11 55 55 H 1.07995 * 119.97479 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4301 1.2841 0.0058 5 6 4.2526 0.0214 0.0115 6 8 3.8688 -0.8022 -1.0915 7 14 3.9644 -0.9003 1.6046 8 1 2.5551 -1.3649 1.6597 9 1 4.8747 -2.0719 1.6703 10 1 4.2339 0.0009 2.7536 11 6 4.0566 2.5210 0.0018 12 8 5.4135 2.5961 0.0037 13 6 5.9910 3.9032 0.0046 14 6 7.5166 3.7867 0.0060 15 6 8.1349 5.1863 0.0076 16 8 9.5597 5.0775 0.0084 17 14 10.3346 6.5127 0.0094 18 6 9.8576 7.4771 -1.5115 19 6 9.8559 7.4757 1.5308 20 6 12.1752 6.2248 0.0111 21 6 12.5687 5.4336 -1.2380 22 6 12.9020 7.5710 0.0127 23 6 12.5664 5.4330 1.2605 24 6 3.2971 3.6821 0.0009 25 6 1.9171 3.6065 0.0000 26 6 1.2905 2.3753 0.0004 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 5.3091 0.2755 -0.0752 31 1 4.0681 -0.4189 -1.9566 32 1 5.6691 4.4433 -0.8858 33 1 5.6666 4.4430 0.8942 34 1 7.8389 3.2465 0.8962 35 1 7.8406 3.2470 -0.8838 36 1 7.8126 5.7269 -0.8823 37 1 7.8108 5.7257 0.8976 38 1 8.7807 7.6456 -1.5120 39 1 10.3758 8.4361 -1.5110 40 1 10.1377 6.9137 -2.4016 41 1 10.1349 6.9114 2.4207 42 1 10.3734 8.4350 1.5313 43 1 8.7791 7.6441 1.5303 44 1 12.2901 5.9976 -2.1281 45 1 13.6455 5.2647 -1.2368 46 1 12.0509 4.4745 -1.2388 47 1 12.6216 8.1343 0.9027 48 1 13.9789 7.4025 0.0133 49 1 12.6234 8.1354 -0.8772 50 1 12.0485 4.4738 1.2598 51 1 13.6432 5.2641 1.2613 52 1 12.2860 5.9965 2.1504 53 1 3.7846 4.6458 0.0013 54 1 1.3276 4.5114 -0.0003 55 1 0.2120 2.3187 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_215219_18527724.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:25:07 Heat of formation + Delta-G solvation = -183.297689 kcal Electronic energy + Delta-G solvation = -30222.853717 eV Core-core repulsion = 26155.944750 eV Total energy + Delta-G solvation = -4066.908967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.202 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69932 -40.12312 -38.31059 -37.70023 -37.18221 -36.82009 -33.63913 -32.31410 -30.35764 -29.36345 -29.04899 -28.35764 -27.83406 -27.36963 -26.73397 -26.40732 -23.26968 -22.70992 -21.98397 -20.41066 -19.62942 -18.49081 -17.93684 -17.50367 -17.36589 -17.12481 -16.87980 -16.55740 -16.07644 -15.95232 -15.91602 -15.61952 -15.19860 -14.99946 -14.85574 -14.71663 -14.54854 -14.04789 -13.94864 -13.88111 -13.49473 -13.43421 -13.33335 -13.18035 -13.05521 -12.96099 -12.94601 -12.92940 -12.79181 -12.39796 -12.36377 -12.26734 -12.18782 -12.14138 -11.91933 -11.71793 -11.69144 -11.54413 -11.32869 -11.27973 -11.23466 -10.90770 -10.29172 -10.04594 -9.35404 -9.11553 0.23123 0.40827 1.25470 1.42663 1.48130 1.55008 1.79715 1.95310 2.03373 2.14672 2.47475 2.68594 2.73170 3.64148 3.83589 3.91343 3.93384 4.04590 4.12000 4.12735 4.13306 4.15208 4.20171 4.28634 4.39592 4.40110 4.42182 4.47176 4.47874 4.48923 4.53172 4.74391 4.76127 4.76839 4.79731 4.81141 4.83285 4.83393 4.85280 5.00725 5.08216 5.09382 5.09859 5.10192 5.21701 5.24285 5.27370 5.35726 5.41621 5.44471 5.45647 5.53078 5.57127 5.62745 5.66189 6.33579 6.43005 6.76814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.316 6.316 3 C 0.165 3.835 4 C -0.216 4.216 5 C -0.064 4.064 6 O -0.546 6.546 7 Si 1.021 2.979 8 H -0.254 1.254 9 H -0.268 1.268 10 H -0.260 1.260 11 C 0.170 3.830 12 O -0.322 6.322 13 C 0.053 3.947 14 C -0.122 4.122 15 C 0.080 3.920 16 O -0.641 6.641 17 Si 1.318 2.682 18 C -0.517 4.517 19 C -0.518 4.518 20 C -0.386 4.386 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.250 4.250 25 C -0.036 4.036 26 C -0.253 4.253 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.374 0.626 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.063 0.937 50 H 0.055 0.945 51 H 0.046 0.954 52 H 0.060 0.940 53 H 0.154 0.846 54 H 0.155 0.845 55 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 5.803 -0.472 6.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.229 6.229 3 C 0.118 3.882 4 C -0.218 4.218 5 C -0.173 4.173 6 O -0.352 6.352 7 Si 0.842 3.158 8 H -0.178 1.178 9 H -0.192 1.192 10 H -0.185 1.185 11 C 0.124 3.876 12 O -0.236 6.236 13 C -0.021 4.021 14 C -0.160 4.160 15 C 0.005 3.995 16 O -0.601 6.601 17 Si 1.448 2.552 18 C -0.619 4.619 19 C -0.620 4.620 20 C -0.428 4.428 21 C -0.194 4.194 22 C -0.198 4.198 23 C -0.194 4.194 24 C -0.268 4.268 25 C -0.054 4.054 26 C -0.272 4.272 27 H 0.128 0.872 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.222 0.778 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.074 0.926 51 H 0.065 0.935 52 H 0.079 0.921 53 H 0.172 0.828 54 H 0.173 0.827 55 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.598 4.329 0.766 5.106 hybrid contribution 0.337 1.301 -0.953 1.647 sum -2.261 5.629 -0.186 6.069 Atomic orbital electron populations 1.23352 0.76833 1.05277 1.02440 1.86233 1.22889 1.26212 1.87570 1.18663 0.90959 0.85311 0.93241 1.18905 0.91712 0.94509 1.16656 1.24722 0.99173 0.92937 1.00457 1.86688 1.86109 1.45925 1.16473 0.84346 0.80522 0.77862 0.73036 1.17769 1.19235 1.18455 1.18462 0.82606 0.92861 0.93691 1.85984 1.16914 1.32594 1.88086 1.22940 0.93400 0.82258 1.03515 1.21501 0.91600 0.98192 1.04665 1.22005 0.78593 0.96422 1.02513 1.85322 1.22337 1.60720 1.91690 0.76145 0.61789 0.52457 0.64785 1.27088 1.06112 1.10560 1.18160 1.27095 1.06120 1.10545 1.18194 1.25974 1.20691 0.98461 0.97675 1.21541 1.01177 0.99881 0.96822 1.21598 1.00284 0.95557 1.02319 1.21542 1.01181 0.99879 0.96828 1.21452 0.95176 0.97833 1.12379 1.21118 0.93930 0.97913 0.92430 1.21455 1.01260 0.91902 1.12563 0.87167 0.91281 0.91544 0.90018 0.77770 0.89854 0.89929 0.90543 0.90481 0.90679 0.90714 0.90697 0.90419 0.91247 0.91274 0.90421 0.90715 0.92031 0.93483 0.92608 0.91761 0.93290 0.91752 0.92617 0.93479 0.92055 0.82845 0.82697 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.32 -2.13 7.35 -80.69 -0.59 -2.73 16 3 C 0.16 0.98 6.11 22.49 0.14 1.11 16 4 C -0.22 -1.42 4.49 -19.68 -0.09 -1.51 16 5 C -0.06 -0.44 2.63 71.24 0.19 -0.25 16 6 O -0.55 -4.00 11.83 -137.26 -1.62 -5.63 16 7 Si 1.02 8.15 26.99 68.60 1.85 10.00 16 8 H -0.25 -2.57 6.46 99.48 0.64 -1.93 16 9 H -0.27 -2.43 7.11 99.48 0.71 -1.72 16 10 H -0.26 -2.07 7.11 99.48 0.71 -1.36 16 11 C 0.17 0.67 6.66 22.49 0.15 0.82 16 12 O -0.32 -0.90 8.91 -92.41 -0.82 -1.72 16 13 C 0.05 -0.21 4.74 71.98 0.34 0.14 16 14 C -0.12 0.35 5.95 30.60 0.18 0.53 16 15 C 0.08 -0.38 5.12 71.98 0.37 -0.01 16 16 O -0.64 0.63 8.56 -148.98 -1.28 -0.64 16 17 Si 1.32 -4.83 8.45 68.60 0.58 -4.25 16 18 C -0.52 1.87 8.50 113.37 0.96 2.84 16 19 C -0.52 1.82 8.50 113.37 0.96 2.78 16 20 C -0.39 0.33 0.53 -10.80 -0.01 0.33 16 21 C -0.14 -0.05 7.85 71.98 0.56 0.51 16 22 C -0.14 0.24 7.85 71.98 0.56 0.81 16 23 C -0.14 -0.06 7.84 71.98 0.56 0.50 16 24 C -0.25 0.05 9.04 22.38 0.20 0.25 16 25 C -0.04 0.04 10.04 22.24 0.22 0.26 16 26 C -0.25 -0.37 9.04 22.38 0.20 -0.17 16 27 H 0.11 -0.37 8.14 -2.38 -0.02 -0.39 16 28 H 0.07 -0.26 7.66 -2.39 -0.02 -0.28 16 29 H 0.07 -0.24 7.66 -2.38 -0.02 -0.26 16 30 H 0.08 0.43 6.83 -2.39 -0.02 0.42 16 31 H 0.37 0.49 9.11 -74.06 -0.67 -0.19 16 32 H 0.08 -0.59 7.66 -2.39 -0.02 -0.61 16 33 H 0.08 -0.57 7.66 -2.39 -0.02 -0.58 16 34 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.08 -0.63 7.21 -2.39 -0.02 -0.64 16 37 H 0.07 -0.61 7.22 -2.39 -0.02 -0.63 16 38 H 0.07 -0.39 7.48 -2.39 -0.02 -0.41 16 39 H 0.08 -0.31 7.79 -2.39 -0.02 -0.33 16 40 H 0.07 -0.18 7.79 -2.39 -0.02 -0.19 16 41 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 42 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 43 H 0.07 -0.38 7.48 -2.39 -0.02 -0.40 16 44 H 0.06 -0.08 7.80 -2.39 -0.02 -0.09 16 45 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.05 0.07 7.96 -2.39 -0.02 0.05 16 47 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 48 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 49 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 50 H 0.05 0.07 7.97 -2.38 -0.02 0.05 16 51 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 52 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 53 H 0.15 -0.86 6.29 -2.91 -0.02 -0.88 16 54 H 0.16 -1.04 8.06 -2.91 -0.02 -1.06 16 55 H 0.15 -0.42 6.29 -2.91 -0.02 -0.43 16 Total: 0.00 -13.62 431.17 5.61 -8.01 By element: Atomic # 1 Polarization: -13.92 SS G_CDS: 0.86 Total: -13.07 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.63 Total: 10.02 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -4.31 Total: -10.72 kcal Atomic # 14 Polarization: 3.32 SS G_CDS: 2.43 Total: 5.75 kcal Total: -13.62 5.61 -8.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_18527724.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.289 kcal (2) G-P(sol) polarization free energy of solvation -13.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds