Wall clock time and date at job start Mon Mar 8 2021 15:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00009 * 2 1 4 4 C 1.38758 * 120.02928 * 0.02562 * 3 2 1 5 5 C 1.38193 * 120.05814 * 179.97438 * 4 3 2 6 6 C 1.38148 * 120.11053 * 359.97438 * 5 4 3 7 7 C 1.38802 * 120.05369 * 0.02562 * 6 5 4 8 8 O 1.35895 * 120.02795 * 180.02562 * 7 6 5 9 9 C 1.42906 * 116.99890 * 353.84267 * 8 7 6 10 10 Si 1.86291 * 109.47464 * 282.06833 * 9 8 7 11 11 C 1.86303 * 109.47125 * 66.17148 * 10 9 8 12 12 C 1.86300 * 109.47374 * 186.16997 * 10 9 8 13 13 C 1.86304 * 109.47253 * 306.17154 * 10 9 8 14 14 C 1.38611 * 119.94406 * 359.74455 * 7 6 5 15 15 C 1.50702 * 120.05291 * 180.25104 * 14 7 6 16 16 O 1.42903 * 109.47063 * 236.54084 * 15 14 7 17 17 Si 1.86306 * 109.46550 * 116.54882 * 15 14 7 18 18 H 1.48499 * 109.47364 * 65.39268 * 17 15 14 19 19 H 1.48505 * 109.46838 * 185.38987 * 17 15 14 20 20 H 1.48494 * 109.47097 * 305.38717 * 17 15 14 21 21 H 1.08995 * 109.47352 * 300.00021 * 1 2 3 22 22 H 1.09002 * 109.46772 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46900 * 60.00204 * 1 2 3 24 24 H 1.08007 * 119.96793 * 359.95153 * 4 3 2 25 25 H 1.08002 * 119.94445 * 179.97438 * 5 4 3 26 26 H 1.07997 * 119.97939 * 180.02562 * 6 5 4 27 27 H 1.09003 * 109.47102 * 42.07205 * 9 8 7 28 28 H 1.09005 * 109.46614 * 162.06432 * 9 8 7 29 29 H 1.08994 * 109.47117 * 55.72433 * 11 10 9 30 30 H 1.09007 * 109.47292 * 175.72804 * 11 10 9 31 31 H 1.09002 * 109.47057 * 295.72195 * 11 10 9 32 32 H 1.08998 * 109.46895 * 60.00211 * 12 10 9 33 33 H 1.08996 * 109.46934 * 179.97438 * 12 10 9 34 34 H 1.08997 * 109.46948 * 300.00212 * 12 10 9 35 35 H 1.09001 * 109.46730 * 65.00643 * 13 10 9 36 36 H 1.08992 * 109.47168 * 185.00758 * 13 10 9 37 37 H 1.08995 * 109.47084 * 305.01191 * 13 10 9 38 38 H 1.08987 * 109.47358 * 356.54781 * 15 14 7 39 39 H 0.96698 * 113.99425 * 65.50065 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9176 3.6066 0.0011 6 6 3.2970 3.6822 0.0016 7 6 4.0569 2.5207 0.0011 8 8 5.4138 2.5957 0.0021 9 6 5.9917 3.8957 -0.1328 10 14 5.9185 4.4258 -1.9172 11 6 4.1406 4.6557 -2.4243 12 6 6.8366 6.0334 -2.1257 13 6 6.7050 3.1183 -2.9863 14 6 3.4306 1.2841 0.0054 15 6 4.2532 0.0215 0.0105 16 8 3.8914 -0.7873 -1.1107 17 14 3.9335 -0.9214 1.5852 18 1 2.5219 -1.3819 1.6086 19 1 4.8387 -2.0969 1.6508 20 1 4.1852 -0.0372 2.7514 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 0.2122 2.3184 0.0002 25 1 1.3280 4.5115 0.0011 26 1 3.7846 4.6458 0.0024 27 1 5.4364 4.6056 0.4802 28 1 7.0308 3.8671 0.1955 29 1 3.6595 5.3648 -1.7507 30 1 4.1002 5.0385 -3.4441 31 1 3.6220 3.6983 -2.3748 32 1 7.8767 5.8988 -1.8291 33 1 6.7941 6.3432 -3.1699 34 1 6.3764 6.7983 -1.5003 35 1 6.1159 2.2028 -2.9331 36 1 6.7424 3.4669 -4.0182 37 1 7.7168 2.9202 -2.6327 38 1 5.3110 0.2767 -0.0518 39 1 4.1092 -0.3932 -1.9665 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_215219_3095236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:18:50 Heat of formation + Delta-G solvation = -112.423499 kcal Electronic energy + Delta-G solvation = -20014.231606 eV Core-core repulsion = 17046.766261 eV Total energy + Delta-G solvation = -2967.465344 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.125 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.66729 -39.95269 -37.57826 -37.08130 -32.61590 -30.68952 -29.78673 -28.70258 -28.52633 -28.12982 -27.51322 -26.40111 -22.63231 -22.48189 -19.50943 -18.37333 -17.53302 -17.36171 -17.03633 -16.49343 -16.42785 -15.81692 -15.70667 -15.04506 -14.40515 -14.27992 -14.24671 -14.07624 -13.89623 -13.73705 -13.60071 -13.38454 -13.33089 -13.19650 -13.01076 -12.86850 -12.38380 -12.26299 -11.97388 -11.93162 -11.55832 -11.07195 -11.00737 -10.91494 -10.73914 -10.68988 -9.18218 -8.91860 0.31802 0.49095 1.41264 1.49689 1.58467 1.69498 1.76643 1.83829 2.12287 2.30860 2.43483 2.78595 2.80348 3.71188 3.93248 4.00724 4.05489 4.13580 4.21301 4.29409 4.35824 4.42743 4.57860 4.59264 4.59803 4.63606 4.65105 4.69738 4.72587 4.73920 4.76462 4.95219 5.24010 5.33583 5.35605 5.47301 5.50989 5.51787 5.54557 6.35613 6.48325 6.83446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.294 6.294 3 C 0.178 3.822 4 C -0.247 4.247 5 C -0.037 4.037 6 C -0.242 4.242 7 C 0.170 3.830 8 O -0.289 6.289 9 C -0.246 4.246 10 Si 0.989 3.011 11 C -0.447 4.447 12 C -0.448 4.448 13 C -0.442 4.442 14 C -0.195 4.195 15 C -0.068 4.068 16 O -0.532 6.532 17 Si 1.006 2.994 18 H -0.238 1.238 19 H -0.258 1.258 20 H -0.258 1.258 21 H 0.056 0.944 22 H 0.102 0.898 23 H 0.057 0.943 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 3.563 -0.882 3.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.206 6.206 3 C 0.132 3.868 4 C -0.266 4.266 5 C -0.055 4.055 6 C -0.261 4.261 7 C 0.124 3.876 8 O -0.201 6.201 9 C -0.367 4.367 10 Si 1.186 2.814 11 C -0.555 4.555 12 C -0.556 4.556 13 C -0.551 4.551 14 C -0.197 4.197 15 C -0.176 4.176 16 O -0.337 6.337 17 Si 0.825 3.175 18 H -0.160 1.160 19 H -0.182 1.182 20 H -0.182 1.182 21 H 0.074 0.926 22 H 0.120 0.880 23 H 0.076 0.924 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.154 0.846 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.791 2.341 0.405 2.504 hybrid contribution -0.017 1.328 -0.880 1.594 sum -0.808 3.670 -0.475 3.788 Atomic orbital electron populations 1.23129 0.78360 1.04283 1.01403 1.86285 1.21161 1.25670 1.87453 1.18442 0.90769 0.84776 0.92836 1.21165 1.00283 0.92093 1.13056 1.20713 0.93707 0.97195 0.93923 1.21215 0.94859 0.97733 1.12266 1.18396 0.82900 0.92583 0.93755 1.85987 1.16529 1.30288 1.87295 1.28228 1.01479 0.86666 1.20278 0.79836 0.68584 0.67525 0.65499 1.26438 1.18208 1.05197 1.05662 1.26069 1.08428 1.15989 1.05154 1.25997 1.07364 1.12296 1.09400 1.18743 0.91263 0.94122 1.15577 1.24837 0.99142 0.93329 1.00316 1.86742 1.85895 1.45570 1.15456 0.84556 0.81922 0.78306 0.72677 1.16046 1.18227 1.18201 0.92571 0.87992 0.92420 0.85148 0.85403 0.84612 0.90745 0.87231 0.90935 0.91218 0.90629 0.90986 0.90697 0.91060 0.90933 0.91105 0.91081 0.90367 0.79135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.29 -0.90 7.25 -29.94 -0.22 -1.12 16 3 C 0.18 0.51 6.11 -39.24 -0.24 0.27 16 4 C -0.25 -0.29 9.04 -39.41 -0.36 -0.65 16 5 C -0.04 -0.01 10.03 -39.63 -0.40 -0.41 16 6 C -0.24 -0.13 5.63 -39.41 -0.22 -0.35 16 7 C 0.17 0.33 5.74 -39.23 -0.23 0.11 16 8 O -0.29 -0.38 8.56 -19.41 -0.17 -0.54 16 9 C -0.25 0.38 5.30 101.05 0.54 0.92 16 10 Si 0.99 -2.82 11.68 -169.99 -1.99 -4.81 16 11 C -0.45 0.73 7.03 101.05 0.71 1.44 16 12 C -0.45 1.12 8.65 101.05 0.87 1.99 16 13 C -0.44 0.58 8.65 101.05 0.87 1.45 16 14 C -0.20 -0.58 4.51 -104.33 -0.47 -1.05 16 15 C -0.07 -0.19 2.63 36.01 0.09 -0.10 16 16 O -0.53 -1.59 11.91 -45.76 -0.54 -2.13 16 17 Si 1.01 3.45 26.93 -169.99 -4.58 -1.13 16 18 H -0.24 -1.01 6.36 56.52 0.36 -0.65 16 19 H -0.26 -0.99 7.11 56.52 0.40 -0.59 16 20 H -0.26 -0.94 7.11 56.52 0.40 -0.54 16 21 H 0.06 -0.08 7.66 -51.93 -0.40 -0.48 16 22 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 23 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 24 H 0.13 -0.09 6.29 -52.48 -0.33 -0.42 16 25 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 26 H 0.14 -0.21 4.25 -52.49 -0.22 -0.44 16 27 H 0.07 -0.17 6.06 -51.93 -0.31 -0.49 16 28 H 0.11 -0.30 7.96 -51.93 -0.41 -0.71 16 29 H 0.07 -0.16 6.49 -51.93 -0.34 -0.49 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.02 6.55 -51.93 -0.34 -0.36 16 32 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 33 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 35 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 38 H 0.08 0.15 6.82 -51.94 -0.35 -0.21 16 39 H 0.36 -0.03 9.11 45.56 0.42 0.39 16 LS Contribution 310.85 15.07 4.68 4.68 Total: 0.00 -5.07 310.85 -5.91 -10.97 By element: Atomic # 1 Polarization: -5.24 SS G_CDS: -5.27 Total: -10.51 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 2.17 Total: 4.59 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: -0.93 Total: -3.80 kcal Atomic # 14 Polarization: 0.62 SS G_CDS: -6.56 Total: -5.94 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -5.07 -5.91 -10.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_3095236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.452 kcal (2) G-P(sol) polarization free energy of solvation -5.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds