Wall clock time and date at job start Mon Mar 8 2021 15:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 C 1.53007 * 109.46794 * 240.00561 * 2 1 3 5 5 Si 1.86295 * 109.47498 * 120.00396 * 2 1 3 6 6 C 1.86302 * 109.46843 * 299.99836 * 5 2 1 7 7 C 1.86300 * 109.47148 * 179.97438 * 5 2 1 8 8 O 1.63100 * 109.47170 * 59.99892 * 5 2 1 9 9 C 1.42900 * 114.00257 * 180.02562 * 8 5 2 10 10 C 1.52995 * 109.47569 * 180.02562 * 9 8 5 11 11 C 1.52996 * 109.47266 * 179.97438 * 10 9 8 12 12 O 1.42904 * 109.47191 * 179.97438 * 11 10 9 13 13 C 1.35924 * 117.00161 * 179.97438 * 12 11 10 14 14 C 1.38666 * 120.05984 * 0.02562 * 13 12 11 15 15 C 1.38191 * 119.96042 * 180.02562 * 14 13 12 16 16 C 1.38236 * 120.07105 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.93469 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.46938 * 299.99527 * 17 16 15 19 19 Si 1.86299 * 109.46748 * 179.97438 * 17 16 15 20 20 H 1.48503 * 109.47188 * 60.00070 * 19 17 16 21 21 H 1.48506 * 109.47139 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47505 * 299.99883 * 19 17 16 23 23 C 1.38288 * 120.12567 * 0.22877 * 16 15 14 24 24 C 1.38217 * 120.03547 * 359.49507 * 23 16 15 25 25 Cl 1.73601 * 120.03754 * 180.23016 * 24 23 16 26 26 H 1.09009 * 109.47058 * 299.99481 * 1 2 3 27 27 H 1.09003 * 109.47617 * 59.99703 * 1 2 3 28 28 H 1.09000 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46911 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47138 * 300.00590 * 3 2 1 31 31 H 1.08994 * 109.46866 * 59.99935 * 3 2 1 32 32 H 1.09005 * 109.46680 * 299.99441 * 4 2 1 33 33 H 1.08993 * 109.47315 * 59.99408 * 4 2 1 34 34 H 1.08993 * 109.47184 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.46612 * 179.97438 * 6 5 2 36 36 H 1.09000 * 109.47144 * 299.99733 * 6 5 2 37 37 H 1.08998 * 109.46936 * 60.00069 * 6 5 2 38 38 H 1.08999 * 109.47170 * 299.99543 * 7 5 2 39 39 H 1.09000 * 109.47380 * 59.99936 * 7 5 2 40 40 H 1.09000 * 109.47007 * 180.02562 * 7 5 2 41 41 H 1.09000 * 109.47083 * 59.99602 * 9 8 5 42 42 H 1.09007 * 109.46858 * 299.99795 * 9 8 5 43 43 H 1.09003 * 109.46996 * 59.99233 * 10 9 8 44 44 H 1.09007 * 109.46803 * 299.99755 * 10 9 8 45 45 H 1.09000 * 109.46982 * 59.99775 * 11 10 9 46 46 H 1.08993 * 109.47433 * 299.99591 * 11 10 9 47 47 H 1.08007 * 120.01714 * 359.97438 * 14 13 12 48 48 H 1.08000 * 119.96298 * 179.97438 * 15 14 13 49 49 H 1.09000 * 109.47161 * 59.99793 * 17 16 15 50 50 H 0.96709 * 113.99981 * 180.02562 * 18 17 16 51 51 H 1.07998 * 119.98221 * 179.72428 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1511 -0.8783 1.5210 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8789 1.5205 8 8 1.6074 -2.4160 1.5209 9 6 2.0287 -3.1815 2.6517 10 6 1.4640 -4.5996 2.5467 11 6 1.9155 -5.4193 3.7571 12 8 1.3876 -6.7436 3.6593 13 6 1.6973 -7.6070 4.6623 14 6 2.4922 -7.1883 5.7186 15 6 2.8063 -8.0680 6.7370 16 6 2.3294 -9.3651 6.7035 17 6 2.6743 -10.3221 7.8155 18 8 4.0931 -10.4768 7.8877 19 14 1.8850 -11.9756 7.4787 20 1 2.3903 -12.5120 6.1894 21 1 2.2254 -12.9189 8.5741 22 1 0.4106 -11.8144 7.4039 23 6 1.5408 -9.7876 5.6491 24 6 1.2189 -8.9102 4.6309 25 17 0.2239 -9.4389 3.3102 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6766 -1.7489 -1.2493 33 1 1.6765 -0.2074 -2.1393 34 1 3.1298 -0.7208 -1.2497 35 1 1.8932 -0.5143 3.9321 36 1 1.8935 1.0276 3.0422 37 1 0.4401 -0.0001 3.0422 38 1 4.3770 -1.3930 0.6305 39 1 4.3778 0.1486 1.5203 40 1 4.3774 -1.3932 2.4102 41 1 1.6639 -2.7114 3.5650 42 1 3.1176 -3.2254 2.6755 43 1 1.8291 -5.0693 1.6334 44 1 0.3750 -4.5561 2.5227 45 1 1.5507 -4.9496 4.6705 46 1 3.0043 -5.4627 3.7807 47 1 2.8663 -6.1754 5.7449 48 1 3.4258 -7.7421 7.5594 49 1 2.3031 -9.9286 8.7618 50 1 4.3879 -11.0810 8.5829 51 1 1.1731 -10.8028 5.6231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2162996_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:19:11 Heat of formation + Delta-G solvation = -152.069646 kcal Electronic energy + Delta-G solvation = -27464.756258 eV Core-core repulsion = 23513.621459 eV Total energy + Delta-G solvation = -3951.134799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.148 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40514 -39.34029 -38.17250 -37.68862 -37.06059 -36.82489 -33.65018 -32.15406 -31.57500 -29.36407 -29.05095 -27.83883 -27.37363 -27.18901 -25.95011 -24.19368 -22.55523 -22.12434 -20.41802 -19.47778 -18.47460 -17.85786 -17.48744 -17.27791 -17.04564 -16.34030 -16.17728 -15.96499 -15.72885 -15.27125 -14.92162 -14.86491 -14.79988 -14.69010 -14.52367 -14.27511 -13.93569 -13.92204 -13.63283 -13.36413 -13.25327 -13.12312 -13.04326 -12.95399 -12.92210 -12.69051 -12.59350 -12.41019 -12.37053 -12.16058 -12.09174 -11.90785 -11.81987 -11.74820 -11.69170 -11.64792 -11.33636 -11.27931 -10.32221 -10.29076 -10.04887 -10.02326 -9.23108 0.01914 0.10344 1.07326 1.16167 1.42120 1.44597 1.47798 1.79534 1.90559 2.07403 2.14957 2.42179 2.53537 3.38852 3.63008 3.79941 3.87737 3.91305 4.04245 4.09911 4.11512 4.12797 4.13474 4.33657 4.38457 4.41115 4.44214 4.46757 4.49870 4.68001 4.76603 4.76700 4.79830 4.81436 4.82578 4.83077 4.83597 5.00190 5.07538 5.07999 5.09290 5.09318 5.09870 5.22190 5.33184 5.35185 5.40961 5.45219 5.51685 5.56892 5.62709 5.66404 6.22782 6.84146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.318 2.682 6 C -0.517 4.517 7 C -0.517 4.517 8 O -0.642 6.642 9 C 0.081 3.919 10 C -0.121 4.121 11 C 0.051 3.949 12 O -0.319 6.319 13 C 0.135 3.865 14 C -0.193 4.193 15 C -0.042 4.042 16 C -0.113 4.113 17 C -0.065 4.065 18 O -0.560 6.560 19 Si 0.953 3.047 20 H -0.275 1.275 21 H -0.247 1.247 22 H -0.260 1.260 23 C -0.090 4.090 24 C -0.086 4.086 25 Cl -0.068 7.068 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.169 0.831 48 H 0.159 0.841 49 H 0.107 0.893 50 H 0.400 0.600 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 2.537 6.048 7.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.429 4.429 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.448 2.552 6 C -0.619 4.619 7 C -0.619 4.619 8 O -0.602 6.602 9 C 0.006 3.994 10 C -0.159 4.159 11 C -0.024 4.024 12 O -0.232 6.232 13 C 0.089 3.911 14 C -0.212 4.212 15 C -0.060 4.060 16 C -0.113 4.113 17 C -0.176 4.176 18 O -0.369 6.369 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.171 1.171 22 H -0.184 1.184 23 C -0.109 4.109 24 C -0.113 4.113 25 Cl -0.039 7.039 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.186 0.814 48 H 0.176 0.824 49 H 0.125 0.875 50 H 0.251 0.749 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.166 1.889 4.937 5.713 hybrid contribution 0.117 0.300 0.021 0.323 sum 2.283 2.190 4.957 5.881 Atomic orbital electron populations 1.21542 0.94398 1.01661 1.01819 1.25986 1.00325 1.03153 1.13403 1.21597 1.01309 0.94640 1.02190 1.21541 1.01042 0.99936 0.96911 0.76158 0.62567 0.52550 0.63955 1.27076 1.06817 1.09866 1.18096 1.27088 1.25106 1.05056 1.04666 1.85323 1.79784 1.46774 1.48322 1.22005 0.99239 0.90767 0.87422 1.21480 1.02729 0.93919 0.97757 1.22997 0.99815 0.79302 1.00241 1.86127 1.70987 1.23094 1.43040 1.18817 0.94792 0.88523 0.89006 1.21600 1.02068 1.03001 0.94487 1.21185 0.95451 0.91348 0.98012 1.19365 1.00060 0.95931 0.95961 1.24463 0.87274 1.06137 0.99718 1.86447 1.19173 1.70512 1.60768 0.85656 0.79338 0.76780 0.80372 1.20014 1.17115 1.18424 1.20840 0.98646 0.98987 0.92407 1.20222 1.03728 0.93203 0.94184 1.98371 1.68313 1.90236 1.46960 0.91981 0.93494 0.92701 0.91735 0.93311 0.91697 0.92707 0.93487 0.92027 0.90610 0.90372 0.91268 0.91331 0.90377 0.90642 0.90492 0.90615 0.90866 0.90736 0.89396 0.89627 0.81403 0.82389 0.87517 0.74928 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 7.85 71.98 0.56 0.45 16 2 C -0.39 0.19 0.53 -10.79 -0.01 0.18 16 3 C -0.14 0.21 7.85 71.98 0.56 0.77 16 4 C -0.14 -0.13 7.85 71.98 0.56 0.44 16 5 Si 1.32 -4.47 8.45 68.60 0.58 -3.89 16 6 C -0.52 1.84 8.50 113.37 0.96 2.80 16 7 C -0.52 1.73 8.50 113.37 0.96 2.70 16 8 O -0.64 0.28 8.56 -148.98 -1.28 -1.00 16 9 C 0.08 -0.36 5.12 71.98 0.37 0.01 16 10 C -0.12 0.22 5.95 30.59 0.18 0.40 16 11 C 0.05 -0.18 4.74 71.98 0.34 0.16 16 12 O -0.32 -1.33 9.60 -92.70 -0.89 -2.21 16 13 C 0.14 0.58 6.68 22.52 0.15 0.73 16 14 C -0.19 0.20 9.04 22.36 0.20 0.40 16 15 C -0.04 0.04 9.60 22.26 0.21 0.26 16 16 C -0.11 -0.17 5.42 -19.85 -0.11 -0.28 16 17 C -0.06 0.19 2.81 71.24 0.20 0.39 16 18 O -0.56 1.48 12.74 -148.98 -1.90 -0.42 16 19 Si 0.95 -0.88 25.07 68.60 1.72 0.84 16 20 H -0.28 -1.08 7.11 99.48 0.71 -0.38 16 21 H -0.25 0.49 7.11 99.48 0.71 1.20 16 22 H -0.26 -0.26 7.11 99.48 0.71 0.44 16 23 C -0.09 -0.44 8.45 22.28 0.19 -0.25 16 24 C -0.09 -0.60 6.33 22.41 0.14 -0.46 16 25 Cl -0.07 -0.58 28.51 -2.72 -0.08 -0.66 16 26 H 0.06 -0.06 7.79 -2.38 -0.02 -0.07 16 27 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.05 0.10 7.97 -2.39 -0.02 0.08 16 29 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 30 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 32 H 0.05 0.10 7.97 -2.38 -0.02 0.08 16 33 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 35 H 0.07 -0.40 7.48 -2.39 -0.02 -0.42 16 36 H 0.08 -0.31 7.79 -2.39 -0.02 -0.33 16 37 H 0.07 -0.17 7.79 -2.39 -0.02 -0.18 16 38 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 39 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 40 H 0.07 -0.38 7.48 -2.39 -0.02 -0.40 16 41 H 0.08 -0.64 7.21 -2.39 -0.02 -0.66 16 42 H 0.08 -0.61 7.21 -2.38 -0.02 -0.63 16 43 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 45 H 0.09 -0.66 7.66 -2.39 -0.02 -0.68 16 46 H 0.09 -0.60 7.66 -2.39 -0.02 -0.62 16 47 H 0.17 -1.24 6.30 -2.91 -0.02 -1.26 16 48 H 0.16 -0.87 8.06 -2.91 -0.02 -0.90 16 49 H 0.11 -0.88 7.96 -2.39 -0.02 -0.90 16 50 H 0.40 -4.58 8.74 -74.05 -0.65 -5.22 16 51 H 0.13 0.52 4.87 -2.91 -0.01 0.51 16 Total: 0.00 -14.45 419.08 4.66 -9.79 By element: Atomic # 1 Polarization: -12.17 SS G_CDS: 1.01 Total: -11.17 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.50 Total: 8.72 kcal Atomic # 8 Polarization: 0.43 SS G_CDS: -4.06 Total: -3.63 kcal Atomic # 14 Polarization: -5.34 SS G_CDS: 2.30 Total: -3.05 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -14.45 4.66 -9.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2162996_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.283 kcal (2) G-P(sol) polarization free energy of solvation -14.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds