Wall clock time and date at job start Mon Mar 8 2021 14:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47003 * 2 1 4 4 C 1.50701 * 109.47472 * 240.00456 * 2 1 3 5 5 C 1.38243 * 119.97496 * 119.99850 * 4 2 1 6 6 C 1.38286 * 120.11138 * 180.02562 * 5 4 2 7 7 C 1.38130 * 120.05232 * 0.02562 * 6 5 4 8 8 N 1.48009 * 120.02567 * 179.97438 * 7 6 5 9 9 O 1.21801 * 119.99870 * 359.97438 * 8 7 6 10 10 O 1.21793 * 119.99999 * 179.97438 * 8 7 6 11 11 C 1.38745 * 119.94803 * 359.97438 * 7 6 5 12 12 O 1.35902 * 120.05854 * 179.97438 * 11 7 6 13 13 C 1.42900 * 117.00143 * 180.02562 * 12 11 7 14 14 C 1.52998 * 109.46923 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.47655 * 54.99345 * 14 13 12 16 16 C 1.52998 * 109.47106 * 174.99961 * 14 13 12 17 17 C 1.52998 * 109.47429 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46788 * 299.99799 * 17 16 14 19 19 H 1.09008 * 109.47201 * 299.99563 * 18 17 16 20 20 O 1.42903 * 109.47256 * 180.02562 * 18 17 16 21 21 C 1.53001 * 109.47329 * 59.99953 * 18 17 16 22 22 C 1.52998 * 109.46901 * 299.99578 * 21 18 17 23 23 C 1.38172 * 119.96797 * 300.25301 * 4 2 1 24 24 H 0.96698 * 113.99972 * 299.99432 * 1 2 3 25 25 H 1.09002 * 109.47231 * 119.99851 * 2 1 3 26 26 H 1.48496 * 110.00224 * 300.00261 * 3 2 1 27 27 H 1.48502 * 110.00285 * 61.31930 * 3 2 1 28 28 H 1.07990 * 119.94811 * 359.97438 * 5 4 2 29 29 H 1.07998 * 119.97819 * 179.97438 * 6 5 4 30 30 H 1.08993 * 109.47628 * 59.99737 * 13 12 11 31 31 H 1.09006 * 109.46786 * 299.99875 * 13 12 11 32 32 H 1.08997 * 109.47366 * 59.99207 * 16 14 13 33 33 H 1.09009 * 109.46785 * 299.99476 * 16 14 13 34 34 H 1.08997 * 109.47384 * 179.97438 * 17 16 14 35 35 H 1.08997 * 109.47329 * 59.99386 * 17 16 14 36 36 H 0.96700 * 114.00311 * 180.02562 * 20 18 17 37 37 H 1.08997 * 109.47215 * 60.00152 * 21 18 17 38 38 H 1.08999 * 109.47164 * 180.02562 * 21 18 17 39 39 H 1.08997 * 109.47655 * 300.00305 * 22 21 18 40 40 H 1.09005 * 109.46908 * 179.97438 * 22 21 18 41 41 H 1.08002 * 120.02862 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7262 -0.0379 -2.1401 6 6 3.1883 -0.6867 -3.2704 7 6 2.8562 -2.0088 -3.4935 8 7 3.3507 -2.7026 -4.7038 9 8 4.0504 -2.1075 -5.5038 10 8 3.0580 -3.8685 -4.8998 11 6 2.0587 -2.6859 -2.5822 12 8 1.7302 -3.9866 -2.7997 13 6 0.9054 -4.6201 -1.8196 14 6 0.6445 -6.0699 -2.2328 15 1 1.5949 -6.5782 -2.3953 16 6 -0.1329 -6.7838 -1.1252 17 6 -0.3944 -8.2335 -1.5386 18 6 -1.2126 -8.2554 -2.8313 19 1 -2.1629 -7.7469 -2.6685 20 8 -1.4574 -9.6094 -3.2172 21 6 -0.4353 -7.5415 -3.9390 22 6 -0.1738 -6.0918 -3.5256 23 6 1.5930 -2.0316 -1.4513 24 1 -0.3933 0.4416 0.7651 25 1 1.7924 -0.5138 0.8900 26 1 1.5614 2.4679 -1.2084 27 1 1.5879 2.4586 1.2242 28 1 2.9859 0.9961 -1.9681 29 1 3.8087 -0.1592 -3.9798 30 1 -0.0424 -4.0875 -1.7431 31 1 1.4107 -4.6032 -0.8539 32 1 -1.0833 -6.2756 -0.9627 33 1 0.4499 -6.7679 -0.2041 34 1 -0.9478 -8.7422 -0.7493 35 1 0.5558 -8.7420 -1.7014 36 1 -1.9720 -9.6996 -4.0309 37 1 0.5150 -8.0500 -4.1018 38 1 -1.0183 -7.5567 -4.8598 39 1 -1.1240 -5.5833 -3.3627 40 1 0.3804 -5.5833 -4.3145 41 1 0.9690 -2.5554 -0.7422 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2392260_16737254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:28:47 Heat of formation + Delta-G solvation = -101.807179 kcal Electronic energy + Delta-G solvation = -26244.332584 eV Core-core repulsion = 22287.216506 eV Total energy + Delta-G solvation = -3957.116078 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.26790 -41.65161 -40.25684 -39.25255 -37.78805 -37.54817 -36.71626 -33.70552 -32.28277 -31.84273 -31.23438 -28.86117 -27.05255 -25.52943 -24.08800 -23.78209 -22.81175 -22.17766 -20.97666 -20.50852 -19.74733 -18.87233 -18.63746 -18.53291 -18.20606 -17.49129 -17.23782 -16.65185 -16.40331 -16.01649 -15.72389 -15.51139 -15.22284 -14.83536 -14.47580 -14.28763 -14.07902 -13.96154 -13.58590 -13.31005 -13.22495 -12.98173 -12.81423 -12.67020 -12.61535 -12.24920 -12.19456 -12.12979 -12.06470 -11.96201 -11.64993 -11.62527 -11.11912 -10.89199 -10.73730 -10.46700 -9.83474 -4.94091 -1.29654 -0.15198 0.15682 0.37705 1.18603 1.59238 1.67448 1.94214 2.03294 2.99642 3.13982 3.22529 3.34620 3.55402 3.60020 3.70638 3.72314 3.79106 3.82095 4.01174 4.09292 4.17899 4.25715 4.29084 4.32360 4.35682 4.43786 4.46979 4.50384 4.53992 4.59789 4.79114 4.90557 4.95134 5.04248 5.06241 5.07947 5.13798 5.16160 5.25669 5.32042 5.41203 5.88245 6.49289 6.50318 6.83497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.092 4.092 3 Si 0.764 3.236 4 C 0.022 3.978 5 C -0.149 4.149 6 C -0.011 4.011 7 C -0.105 4.105 8 N 0.039 4.961 9 O -0.194 6.194 10 O -0.175 6.175 11 C 0.193 3.807 12 O -0.296 6.296 13 C 0.050 3.950 14 C -0.083 4.083 15 H 0.075 0.925 16 C -0.101 4.101 17 C -0.114 4.114 18 C 0.102 3.898 19 H 0.064 0.936 20 O -0.590 6.590 21 C -0.147 4.147 22 C -0.110 4.110 23 C -0.187 4.187 24 H 0.403 0.597 25 H 0.118 0.882 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.176 0.824 29 H 0.177 0.823 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.393 0.607 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 4.456 8.452 9.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.200 4.200 3 Si 0.668 3.332 4 C 0.021 3.979 5 C -0.167 4.167 6 C -0.030 4.030 7 C -0.191 4.191 8 N 0.550 4.450 9 O -0.402 6.402 10 O -0.389 6.389 11 C 0.144 3.856 12 O -0.207 6.207 13 C -0.024 4.024 14 C -0.101 4.101 15 H 0.093 0.907 16 C -0.138 4.138 17 C -0.151 4.151 18 C 0.043 3.957 19 H 0.082 0.918 20 O -0.399 6.399 21 C -0.185 4.185 22 C -0.148 4.148 23 C -0.206 4.206 24 H 0.255 0.745 25 H 0.136 0.864 26 H -0.220 1.220 27 H -0.210 1.210 28 H 0.192 0.808 29 H 0.195 0.805 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.242 0.758 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.578 5.018 8.840 10.287 hybrid contribution -1.318 -0.362 -0.668 1.521 sum -2.895 4.656 8.172 9.841 Atomic orbital electron populations 1.86520 1.17398 1.80941 1.51619 1.25098 0.85027 1.12123 0.97742 0.94063 0.90191 0.71714 0.77228 1.19837 0.91340 0.92609 0.94122 1.21164 1.00676 1.01794 0.93079 1.21139 0.94943 0.89228 0.97701 1.20863 1.12228 0.95939 0.90042 1.43692 0.98436 1.00860 1.01993 1.94508 1.35774 1.67796 1.42170 1.94585 1.61732 1.00709 1.81848 1.18831 0.90140 0.84852 0.91823 1.86403 1.65329 1.20030 1.48948 1.23383 0.94370 0.93617 0.90997 1.21184 1.00088 0.92571 0.96274 0.90697 1.21431 1.01095 0.93817 0.97457 1.21467 1.00183 0.97277 0.96196 1.21922 0.97571 0.81893 0.94302 0.91795 1.86477 1.77909 1.27184 1.48299 1.22211 1.01188 0.96161 0.98949 1.21485 1.00095 0.96072 0.97123 1.21361 1.05264 0.96225 0.97782 0.74538 0.86405 1.22004 1.20963 0.80759 0.80519 0.89769 0.89030 0.89989 0.89352 0.90839 0.92129 0.75778 0.92285 0.91058 0.91010 0.92349 0.81024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.20 12.74 -148.98 -1.90 1.30 16 2 C -0.09 0.79 2.81 71.24 0.20 0.99 16 3 Si 0.76 -6.58 29.79 68.60 2.04 -4.53 16 4 C 0.02 -0.10 5.42 -19.88 -0.11 -0.20 16 5 C -0.15 0.72 8.67 22.28 0.19 0.91 16 6 C -0.01 0.00 9.55 22.26 0.21 0.22 16 7 C -0.11 -0.63 6.87 36.47 0.25 -0.38 16 8 N 0.04 0.50 4.45 -46.24 -0.21 0.30 16 9 O -0.19 -2.74 18.45 18.89 0.35 -2.39 16 10 O -0.17 -2.85 17.24 25.62 0.44 -2.41 16 11 C 0.19 0.62 6.67 22.50 0.15 0.77 16 12 O -0.30 -1.29 7.69 -71.30 -0.55 -1.84 16 13 C 0.05 -0.16 4.12 71.98 0.30 0.13 16 14 C -0.08 0.16 2.43 -10.79 -0.03 0.14 16 15 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 16 C -0.10 0.51 5.20 30.59 0.16 0.67 16 17 C -0.11 0.08 5.57 30.59 0.17 0.25 16 18 C 0.10 0.02 3.47 30.59 0.11 0.13 16 19 H 0.06 -0.12 8.14 -2.38 -0.02 -0.14 16 20 O -0.59 -1.87 13.32 -148.98 -1.98 -3.85 16 21 C -0.15 -0.10 5.55 30.59 0.17 0.07 16 22 C -0.11 -0.04 5.10 30.60 0.16 0.12 16 23 C -0.19 0.48 8.60 22.37 0.19 0.68 16 24 H 0.40 -5.38 8.74 -74.06 -0.65 -6.03 16 25 H 0.12 -1.62 7.96 -2.39 -0.02 -1.64 16 26 H -0.29 0.34 7.11 99.48 0.71 1.05 16 27 H -0.28 1.06 7.11 99.48 0.71 1.77 16 28 H 0.18 -1.79 4.87 -2.92 -0.01 -1.80 16 29 H 0.18 -0.62 7.61 -2.91 -0.02 -0.64 16 30 H 0.08 -0.50 7.65 -2.39 -0.02 -0.52 16 31 H 0.09 -0.68 7.67 -2.38 -0.02 -0.70 16 32 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.09 -0.67 8.14 -2.38 -0.02 -0.69 16 34 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.39 -1.70 9.08 -74.06 -0.67 -2.37 16 37 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.07 -0.04 8.14 -2.39 -0.02 -0.05 16 39 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.06 0.30 7.82 -2.38 -0.02 0.28 16 41 H 0.17 -1.18 6.30 -2.91 -0.02 -1.20 16 Total: 0.00 -22.19 338.90 0.11 -22.08 By element: Atomic # 1 Polarization: -12.93 SS G_CDS: -0.21 Total: -13.14 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 2.12 Total: 4.49 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -0.21 Total: 0.30 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -3.64 Total: -9.20 kcal Atomic # 14 Polarization: -6.58 SS G_CDS: 2.04 Total: -4.53 kcal Total: -22.19 0.11 -22.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2392260_16737254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.726 kcal (2) G-P(sol) polarization free energy of solvation -22.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds