Wall clock time and date at job start Mon Mar 8 2021 15:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46870 * 2 1 4 4 C 1.53003 * 109.47481 * 240.00552 * 2 1 3 5 5 Si 1.86296 * 109.47332 * 120.00225 * 2 1 3 6 6 C 1.86294 * 109.47147 * 300.00065 * 5 2 1 7 7 C 1.86309 * 109.47085 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.46921 * 60.00256 * 5 2 1 9 9 C 1.42904 * 113.99799 * 179.97438 * 8 5 2 10 10 C 1.53006 * 109.46965 * 179.97438 * 9 8 5 11 11 C 1.53007 * 109.47067 * 180.02562 * 10 9 8 12 12 O 1.42898 * 109.46787 * 179.97438 * 11 10 9 13 13 C 1.35905 * 116.99302 * 179.97438 * 12 11 10 14 14 C 1.38707 * 120.05953 * 0.02562 * 13 12 11 15 15 C 1.38162 * 119.94273 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.97123 * 179.97438 * 15 14 13 17 17 O 1.42908 * 109.46833 * 300.01781 * 16 15 14 18 18 Si 1.86295 * 109.47122 * 180.02562 * 16 15 14 19 19 H 1.48494 * 109.47612 * 59.99796 * 18 16 15 20 20 H 1.48508 * 109.47181 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47133 * 299.99346 * 18 16 15 22 22 C 1.38240 * 120.05835 * 359.97438 * 15 14 13 23 23 C 1.38288 * 120.11161 * 359.97438 * 22 15 14 24 24 C 1.38119 * 120.05366 * 0.25928 * 23 22 15 25 25 N 1.48002 * 120.02921 * 179.73926 * 24 23 22 26 26 O 1.21803 * 119.99866 * 0.02562 * 25 24 23 27 27 O 1.21803 * 120.00311 * 179.97438 * 25 24 23 28 28 H 1.09002 * 109.47071 * 299.99621 * 1 2 3 29 29 H 1.08995 * 109.47379 * 59.99960 * 1 2 3 30 30 H 1.09003 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46883 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47152 * 300.00179 * 3 2 1 33 33 H 1.08999 * 109.46472 * 60.00293 * 3 2 1 34 34 H 1.09003 * 109.46871 * 300.00200 * 4 2 1 35 35 H 1.09008 * 109.47066 * 59.99720 * 4 2 1 36 36 H 1.08990 * 109.47598 * 179.97438 * 4 2 1 37 37 H 1.09008 * 109.47107 * 179.97438 * 6 5 2 38 38 H 1.09003 * 109.47705 * 299.99876 * 6 5 2 39 39 H 1.09002 * 109.47133 * 59.99830 * 6 5 2 40 40 H 1.09002 * 109.47046 * 299.99988 * 7 5 2 41 41 H 1.08994 * 109.46774 * 60.00064 * 7 5 2 42 42 H 1.08998 * 109.46879 * 180.02562 * 7 5 2 43 43 H 1.09007 * 109.47138 * 60.00490 * 9 8 5 44 44 H 1.08998 * 109.47574 * 300.00200 * 9 8 5 45 45 H 1.08994 * 109.46976 * 60.00496 * 10 9 8 46 46 H 1.09001 * 109.47082 * 299.99728 * 10 9 8 47 47 H 1.08997 * 109.46795 * 59.99800 * 11 10 9 48 48 H 1.08996 * 109.46586 * 300.00389 * 11 10 9 49 49 H 1.07998 * 120.02691 * 0.02562 * 14 13 12 50 50 H 1.08995 * 109.47366 * 60.01332 * 16 15 14 51 51 H 0.96700 * 114.00060 * 300.00130 * 17 16 15 52 52 H 1.08007 * 119.94360 * 179.97438 * 22 15 14 53 53 H 1.08002 * 119.96980 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 14 2.1510 -0.8783 1.5210 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8775 1.5214 8 8 1.6074 -2.4159 1.5209 9 6 2.0296 -3.1817 2.6512 10 6 1.4637 -4.5995 2.5468 11 6 1.9152 -5.4192 3.7573 12 8 1.3862 -6.7431 3.6600 13 6 1.6958 -7.6063 4.6630 14 6 2.4917 -7.1877 5.7191 15 6 2.8045 -8.0671 6.7378 16 6 3.6697 -7.6131 7.8852 17 8 4.9419 -7.1951 7.3861 18 14 3.9043 -9.0219 9.0813 19 1 4.5607 -10.1578 8.3857 20 1 4.7574 -8.5747 10.2117 21 1 2.5824 -9.4562 9.6000 22 6 2.3245 -9.3631 6.7054 23 6 1.5300 -9.7826 5.6542 24 6 1.2184 -8.9088 4.6310 25 7 0.3727 -9.3601 3.5033 26 8 -0.0492 -10.5024 3.4776 27 8 0.0979 -8.5889 2.6015 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6767 -0.2072 -2.1393 36 1 3.1300 -0.7207 -1.2496 37 1 1.8931 -0.5143 3.9322 38 1 1.8933 1.0276 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3778 -1.3911 0.6313 41 1 4.3770 0.1502 1.5216 42 1 4.3774 -1.3918 2.4111 43 1 1.6654 -2.7120 3.5649 44 1 3.1185 -3.2255 2.6742 45 1 1.8275 -5.0695 1.6332 46 1 0.3749 -4.5553 2.5241 47 1 1.5512 -4.9490 4.6707 48 1 3.0041 -5.4633 3.7804 49 1 2.8659 -6.1749 5.7454 50 1 3.1880 -6.7792 8.3957 51 1 5.4281 -7.8882 6.9189 52 1 2.5705 -10.0491 7.5025 53 1 1.1566 -10.7958 5.6311 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_2392260_18527724.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:32:43 Heat of formation + Delta-G solvation = -151.712863 kcal Electronic energy + Delta-G solvation = -31980.098214 eV Core-core repulsion = 27557.762244 eV Total energy + Delta-G solvation = -4422.335971 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.04860 -41.61625 -39.75726 -38.36143 -37.79622 -37.20330 -36.86763 -34.06442 -33.27685 -31.63494 -29.50550 -29.14574 -28.79828 -27.90238 -27.42323 -27.20307 -25.59001 -24.15808 -23.16385 -22.42881 -20.53253 -20.42502 -19.51122 -19.14556 -18.60572 -18.38665 -17.77895 -17.69199 -17.08195 -16.68394 -16.39116 -16.28145 -16.15249 -15.97862 -15.54955 -15.34248 -14.91321 -14.85991 -14.68933 -14.48740 -14.11092 -13.98479 -13.70090 -13.50786 -13.46453 -13.35721 -13.20636 -13.10756 -12.96207 -12.95887 -12.67916 -12.53536 -12.44015 -12.40566 -12.28104 -12.18392 -11.98988 -11.85980 -11.82818 -11.77353 -11.74226 -11.50933 -11.40699 -10.98897 -10.67107 -10.44211 -10.11850 -9.93657 -1.18152 -0.28617 0.32937 0.52438 0.79608 1.18534 1.20519 1.25151 1.64934 1.66732 1.71827 1.95729 1.98391 2.37828 2.90944 3.04668 3.15423 3.43751 3.45793 3.62875 3.66468 3.73938 3.88781 4.05371 4.06799 4.09178 4.09286 4.12018 4.18599 4.23756 4.34450 4.43831 4.46001 4.59509 4.62796 4.65426 4.66183 4.71817 4.77988 4.83051 4.89491 4.89997 4.97322 4.99700 5.08131 5.08159 5.16636 5.30890 5.36278 5.38130 5.47294 5.48353 5.49414 5.54264 5.80241 6.15261 6.88087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.288 2.712 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.622 6.622 9 C 0.091 3.909 10 C -0.123 4.123 11 C 0.050 3.950 12 O -0.275 6.275 13 C 0.202 3.798 14 C -0.188 4.188 15 C -0.028 4.028 16 C -0.091 4.091 17 O -0.532 6.532 18 Si 0.949 3.051 19 H -0.246 1.246 20 H -0.247 1.247 21 H -0.245 1.245 22 C -0.166 4.166 23 C -0.010 4.010 24 C -0.079 4.079 25 N 0.033 4.967 26 O -0.177 6.177 27 O -0.131 6.131 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.158 0.842 50 H 0.130 0.870 51 H 0.381 0.619 52 H 0.145 0.855 53 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 2.213 5.125 6.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.420 2.580 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.581 6.581 9 C 0.015 3.985 10 C -0.161 4.161 11 C -0.025 4.025 12 O -0.185 6.185 13 C 0.152 3.848 14 C -0.207 4.207 15 C -0.029 4.029 16 C -0.201 4.201 17 O -0.337 6.337 18 Si 0.770 3.230 19 H -0.169 1.169 20 H -0.170 1.170 21 H -0.168 1.168 22 C -0.184 4.184 23 C -0.028 4.028 24 C -0.164 4.164 25 N 0.552 4.448 26 O -0.386 6.386 27 O -0.353 6.353 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.175 0.825 50 H 0.147 0.853 51 H 0.228 0.772 52 H 0.163 0.837 53 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.116 2.068 6.197 7.721 hybrid contribution 0.170 0.370 -0.617 0.739 sum 4.287 2.437 5.580 7.447 Atomic orbital electron populations 1.21516 0.93755 1.02091 1.01809 1.25786 1.00744 1.02620 1.12693 1.21558 1.00755 0.94908 1.02172 1.21517 1.00577 1.00319 0.96760 0.76699 0.62996 0.53282 0.65062 1.27040 1.07087 1.09543 1.17667 1.27037 1.25029 1.04799 1.04466 1.85338 1.79293 1.46061 1.47400 1.21782 0.98081 0.91382 0.87287 1.21522 1.03845 0.93025 0.97676 1.22996 0.99066 0.79914 1.00512 1.86414 1.68866 1.22204 1.41050 1.18662 0.90605 0.87670 0.87848 1.21184 1.02514 1.02616 0.94427 1.20626 0.93983 0.92873 0.95447 1.25213 0.85152 1.11013 0.98746 1.86558 1.28598 1.41666 1.76886 0.85645 0.82190 0.76206 0.78933 1.16912 1.17020 1.16837 1.20992 1.01402 0.96200 0.99847 1.20903 0.92575 0.99950 0.89407 1.20590 1.07716 0.94024 0.94056 1.43305 0.99530 1.00585 1.01351 1.94554 1.55605 1.04175 1.84264 1.94619 1.60626 1.51321 1.28693 0.92720 0.92751 0.92080 0.92526 0.92464 0.92528 0.92077 0.92753 0.92717 0.91539 0.90646 0.90807 0.90802 0.90648 0.91527 0.92373 0.92332 0.89103 0.89122 0.90875 0.90769 0.82492 0.85281 0.77183 0.83742 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 7.85 37.16 0.29 0.30 16 2 C -0.37 0.20 0.53 -90.62 -0.05 0.15 16 3 C -0.14 0.12 7.85 37.16 0.29 0.41 16 4 C -0.13 0.01 7.85 37.16 0.29 0.30 16 5 Si 1.29 -2.06 8.45 -169.99 -1.44 -3.50 16 6 C -0.51 0.71 8.50 101.05 0.86 1.56 16 7 C -0.51 0.70 8.50 101.05 0.86 1.56 16 8 O -0.62 0.22 8.56 -35.23 -0.30 -0.08 16 9 C 0.09 -0.19 5.12 37.16 0.19 0.00 16 10 C -0.12 0.17 5.95 -26.72 -0.16 0.01 16 11 C 0.05 -0.11 4.74 37.16 0.18 0.07 16 12 O -0.27 -0.36 8.15 -41.56 -0.34 -0.70 16 13 C 0.20 0.15 6.67 -39.22 -0.26 -0.11 16 14 C -0.19 0.35 8.60 -39.44 -0.34 0.01 16 15 C -0.03 0.07 5.39 -104.65 -0.56 -0.49 16 16 C -0.09 0.34 2.82 36.01 0.10 0.45 16 17 O -0.53 1.64 12.77 -35.23 -0.45 1.19 16 18 Si 0.95 -3.30 25.07 -169.99 -4.26 -7.56 16 19 H -0.25 0.81 7.11 56.52 0.40 1.21 16 20 H -0.25 0.42 7.11 56.52 0.40 0.82 16 21 H -0.24 0.72 7.11 56.52 0.40 1.12 16 22 C -0.17 0.38 8.67 -39.56 -0.34 0.04 16 23 C -0.01 0.01 9.55 -39.61 -0.38 -0.37 16 24 C -0.08 -0.16 6.87 -79.81 -0.55 -0.71 16 25 N 0.03 0.17 4.45 34.03 0.15 0.33 16 26 O -0.18 -1.04 18.45 -29.46 -0.54 -1.58 16 27 O -0.13 -0.86 17.24 -36.49 -0.63 -1.49 16 28 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 29 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.06 0.02 7.97 -51.93 -0.41 -0.40 16 31 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 32 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 34 H 0.06 0.02 7.97 -51.93 -0.41 -0.40 16 35 H 0.05 0.01 8.14 -51.92 -0.42 -0.41 16 36 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 37 H 0.07 -0.13 7.48 -51.92 -0.39 -0.52 16 38 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 39 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 40 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 42 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 43 H 0.06 -0.22 7.21 -51.93 -0.37 -0.59 16 44 H 0.06 -0.22 7.21 -51.93 -0.37 -0.59 16 45 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 46 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 47 H 0.07 -0.29 7.66 -51.93 -0.40 -0.69 16 48 H 0.07 -0.29 7.66 -51.93 -0.40 -0.68 16 49 H 0.16 -0.58 6.30 -52.49 -0.33 -0.92 16 50 H 0.13 -0.63 7.96 -51.93 -0.41 -1.04 16 51 H 0.38 -2.31 8.70 45.56 0.40 -1.92 16 52 H 0.15 -0.60 4.87 -52.48 -0.26 -0.85 16 53 H 0.16 -0.31 7.61 -52.49 -0.40 -0.71 16 LS Contribution 429.04 15.07 6.47 6.47 Total: 0.00 -7.27 429.04 -9.22 -16.50 By element: Atomic # 1 Polarization: -4.42 SS G_CDS: -8.30 Total: -12.72 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 0.42 Total: 3.15 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: 0.15 Total: 0.33 kcal Atomic # 8 Polarization: -0.40 SS G_CDS: -2.26 Total: -2.66 kcal Atomic # 14 Polarization: -5.36 SS G_CDS: -5.70 Total: -11.06 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -7.27 -9.22 -16.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2392260_18527724.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.218 kcal (2) G-P(sol) polarization free energy of solvation -7.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds