Wall clock time and date at job start Mon Mar 8 2021 15:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46870 * 2 1 4 4 C 1.53003 * 109.47481 * 240.00552 * 2 1 3 5 5 Si 1.86296 * 109.47332 * 120.00225 * 2 1 3 6 6 C 1.86294 * 109.47147 * 300.00065 * 5 2 1 7 7 C 1.86309 * 109.47085 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.46921 * 60.00256 * 5 2 1 9 9 C 1.42904 * 113.99799 * 179.97438 * 8 5 2 10 10 C 1.53006 * 109.46965 * 179.97438 * 9 8 5 11 11 C 1.53007 * 109.47067 * 180.02562 * 10 9 8 12 12 O 1.42898 * 109.46787 * 179.97438 * 11 10 9 13 13 C 1.35905 * 116.99302 * 179.97438 * 12 11 10 14 14 C 1.38707 * 120.05953 * 0.02562 * 13 12 11 15 15 C 1.38162 * 119.94273 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.97123 * 179.97438 * 15 14 13 17 17 O 1.42908 * 109.46833 * 300.01781 * 16 15 14 18 18 Si 1.86295 * 109.47122 * 180.02562 * 16 15 14 19 19 H 1.48494 * 109.47612 * 59.99796 * 18 16 15 20 20 H 1.48508 * 109.47181 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47133 * 299.99346 * 18 16 15 22 22 C 1.38240 * 120.05835 * 359.97438 * 15 14 13 23 23 C 1.38288 * 120.11161 * 359.97438 * 22 15 14 24 24 C 1.38119 * 120.05366 * 0.25928 * 23 22 15 25 25 N 1.48002 * 120.02921 * 179.73926 * 24 23 22 26 26 O 1.21803 * 119.99866 * 0.02562 * 25 24 23 27 27 O 1.21803 * 120.00311 * 179.97438 * 25 24 23 28 28 H 1.09002 * 109.47071 * 299.99621 * 1 2 3 29 29 H 1.08995 * 109.47379 * 59.99960 * 1 2 3 30 30 H 1.09003 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46883 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47152 * 300.00179 * 3 2 1 33 33 H 1.08999 * 109.46472 * 60.00293 * 3 2 1 34 34 H 1.09003 * 109.46871 * 300.00200 * 4 2 1 35 35 H 1.09008 * 109.47066 * 59.99720 * 4 2 1 36 36 H 1.08990 * 109.47598 * 179.97438 * 4 2 1 37 37 H 1.09008 * 109.47107 * 179.97438 * 6 5 2 38 38 H 1.09003 * 109.47705 * 299.99876 * 6 5 2 39 39 H 1.09002 * 109.47133 * 59.99830 * 6 5 2 40 40 H 1.09002 * 109.47046 * 299.99988 * 7 5 2 41 41 H 1.08994 * 109.46774 * 60.00064 * 7 5 2 42 42 H 1.08998 * 109.46879 * 180.02562 * 7 5 2 43 43 H 1.09007 * 109.47138 * 60.00490 * 9 8 5 44 44 H 1.08998 * 109.47574 * 300.00200 * 9 8 5 45 45 H 1.08994 * 109.46976 * 60.00496 * 10 9 8 46 46 H 1.09001 * 109.47082 * 299.99728 * 10 9 8 47 47 H 1.08997 * 109.46795 * 59.99800 * 11 10 9 48 48 H 1.08996 * 109.46586 * 300.00389 * 11 10 9 49 49 H 1.07998 * 120.02691 * 0.02562 * 14 13 12 50 50 H 1.08995 * 109.47366 * 60.01332 * 16 15 14 51 51 H 0.96700 * 114.00060 * 300.00130 * 17 16 15 52 52 H 1.08007 * 119.94360 * 179.97438 * 22 15 14 53 53 H 1.08002 * 119.96980 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 14 2.1510 -0.8783 1.5210 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8775 1.5214 8 8 1.6074 -2.4159 1.5209 9 6 2.0296 -3.1817 2.6512 10 6 1.4637 -4.5995 2.5468 11 6 1.9152 -5.4192 3.7573 12 8 1.3862 -6.7431 3.6600 13 6 1.6958 -7.6063 4.6630 14 6 2.4917 -7.1877 5.7191 15 6 2.8045 -8.0671 6.7378 16 6 3.6697 -7.6131 7.8852 17 8 4.9419 -7.1951 7.3861 18 14 3.9043 -9.0219 9.0813 19 1 4.5607 -10.1578 8.3857 20 1 4.7574 -8.5747 10.2117 21 1 2.5824 -9.4562 9.6000 22 6 2.3245 -9.3631 6.7054 23 6 1.5300 -9.7826 5.6542 24 6 1.2184 -8.9088 4.6310 25 7 0.3727 -9.3601 3.5033 26 8 -0.0492 -10.5024 3.4776 27 8 0.0979 -8.5889 2.6015 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6767 -0.2072 -2.1393 36 1 3.1300 -0.7207 -1.2496 37 1 1.8931 -0.5143 3.9322 38 1 1.8933 1.0276 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3778 -1.3911 0.6313 41 1 4.3770 0.1502 1.5216 42 1 4.3774 -1.3918 2.4111 43 1 1.6654 -2.7120 3.5649 44 1 3.1185 -3.2255 2.6742 45 1 1.8275 -5.0695 1.6332 46 1 0.3749 -4.5553 2.5241 47 1 1.5512 -4.9490 4.6707 48 1 3.0041 -5.4633 3.7804 49 1 2.8659 -6.1749 5.7454 50 1 3.1880 -6.7792 8.3957 51 1 5.4281 -7.8882 6.9189 52 1 2.5705 -10.0491 7.5025 53 1 1.1566 -10.7958 5.6311 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2392260_18527724.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:32:42 Heat of formation + Delta-G solvation = -144.594831 kcal Electronic energy + Delta-G solvation = -31979.789553 eV Core-core repulsion = 27557.762244 eV Total energy + Delta-G solvation = -4422.027310 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.27295 -41.60804 -39.63038 -38.21241 -37.66416 -37.46182 -36.82249 -33.94690 -33.19076 -31.53633 -29.36737 -29.04984 -28.80261 -27.83699 -27.37266 -27.06343 -25.57466 -24.04167 -23.05938 -22.34341 -20.61680 -20.39990 -19.76801 -19.04823 -18.63349 -18.41879 -17.62206 -17.58365 -16.98952 -16.43173 -16.20457 -16.07584 -16.02559 -15.89281 -15.35898 -15.21514 -14.86045 -14.78333 -14.58310 -14.36962 -13.97149 -13.84353 -13.58376 -13.36153 -13.28293 -13.21265 -13.09884 -12.96601 -12.95273 -12.89620 -12.68352 -12.48782 -12.43745 -12.39517 -12.25816 -12.13960 -12.05090 -11.99842 -11.75829 -11.69771 -11.69377 -11.35975 -11.28861 -10.83349 -10.45934 -10.29356 -10.04797 -9.84540 -1.31122 -0.16698 0.14699 0.37420 1.09449 1.36863 1.48189 1.52660 1.77783 1.84069 1.94664 2.04435 2.14896 2.50575 3.11338 3.17523 3.42950 3.58240 3.63512 3.80269 3.85177 3.90379 4.09138 4.12896 4.12933 4.27974 4.32950 4.33379 4.40725 4.46666 4.47322 4.55839 4.59287 4.76216 4.76568 4.79822 4.81404 4.82714 4.83284 4.86814 5.00344 5.03063 5.04020 5.08779 5.09530 5.09722 5.22007 5.28137 5.35496 5.41090 5.45417 5.56570 5.62513 5.66368 5.89867 6.48159 6.61362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.317 2.683 6 C -0.517 4.517 7 C -0.517 4.517 8 O -0.643 6.643 9 C 0.081 3.919 10 C -0.122 4.122 11 C 0.044 3.956 12 O -0.301 6.301 13 C 0.195 3.805 14 C -0.181 4.181 15 C -0.016 4.016 16 C -0.082 4.082 17 O -0.542 6.542 18 Si 0.973 3.027 19 H -0.246 1.246 20 H -0.273 1.273 21 H -0.250 1.250 22 C -0.160 4.160 23 C -0.012 4.012 24 C -0.105 4.105 25 N 0.037 4.963 26 O -0.195 6.195 27 O -0.175 6.175 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.181 0.819 50 H 0.146 0.854 51 H 0.393 0.607 52 H 0.165 0.835 53 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 2.937 7.419 9.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.429 4.429 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.448 2.552 6 C -0.619 4.619 7 C -0.619 4.619 8 O -0.602 6.602 9 C 0.006 3.994 10 C -0.160 4.160 11 C -0.030 4.030 12 O -0.212 6.212 13 C 0.145 3.855 14 C -0.200 4.200 15 C -0.017 4.017 16 C -0.193 4.193 17 O -0.350 6.350 18 Si 0.797 3.203 19 H -0.170 1.170 20 H -0.198 1.198 21 H -0.174 1.174 22 C -0.178 4.178 23 C -0.031 4.031 24 C -0.190 4.190 25 N 0.548 4.452 26 O -0.404 6.404 27 O -0.389 6.389 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.199 0.801 50 H 0.164 0.836 51 H 0.243 0.757 52 H 0.182 0.818 53 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.757 2.812 8.422 10.582 hybrid contribution -0.270 0.145 -1.233 1.270 sum 5.487 2.957 7.189 9.515 Atomic orbital electron populations 1.21542 0.94446 1.01645 1.01810 1.25995 1.00287 1.03165 1.13442 1.21598 1.01313 0.94633 1.02177 1.21543 1.01050 0.99932 0.96921 0.76160 0.62634 0.52506 0.63946 1.27077 1.06800 1.09882 1.18098 1.27077 1.24988 1.05090 1.04708 1.85329 1.79771 1.46785 1.48359 1.22011 0.99298 0.90579 0.87507 1.21491 1.02867 0.93983 0.97676 1.23225 1.00344 0.78537 1.00864 1.86394 1.69468 1.23578 1.41733 1.18870 0.91010 0.87168 0.88480 1.21420 1.01458 1.03742 0.93367 1.20869 0.92989 0.92470 0.95324 1.25202 0.84894 1.11444 0.97742 1.86542 1.28701 1.42663 1.77063 0.85302 0.81110 0.76059 0.77834 1.16975 1.19827 1.17410 1.21237 1.00351 0.96766 0.99462 1.21105 0.92774 1.00079 0.89147 1.20870 1.08882 0.95497 0.93755 1.43750 0.99401 1.00135 1.01909 1.94509 1.56359 1.04790 1.84713 1.94598 1.62371 1.51444 1.30463 0.91981 0.93512 0.92736 0.91710 0.93336 0.91701 0.92734 0.93511 0.91990 0.90533 0.90364 0.91310 0.91320 0.90367 0.90546 0.90379 0.90398 0.90770 0.90755 0.88581 0.88608 0.80142 0.83629 0.75703 0.81770 0.81047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.14 7.85 71.98 0.56 0.43 16 2 C -0.39 0.19 0.53 -10.79 -0.01 0.18 16 3 C -0.14 0.22 7.85 71.98 0.56 0.78 16 4 C -0.14 -0.14 7.85 71.98 0.56 0.42 16 5 Si 1.32 -4.77 8.45 68.60 0.58 -4.19 16 6 C -0.52 2.00 8.50 113.37 0.96 2.96 16 7 C -0.52 1.97 8.50 113.37 0.96 2.93 16 8 O -0.64 0.37 8.56 -148.98 -1.28 -0.90 16 9 C 0.08 -0.41 5.12 71.98 0.37 -0.04 16 10 C -0.12 0.26 5.95 30.60 0.18 0.44 16 11 C 0.04 -0.22 4.74 71.98 0.34 0.12 16 12 O -0.30 -1.01 8.15 -71.34 -0.58 -1.59 16 13 C 0.19 0.28 6.67 22.51 0.15 0.43 16 14 C -0.18 1.02 8.60 22.36 0.19 1.21 16 15 C -0.02 0.12 5.39 -19.88 -0.11 0.01 16 16 C -0.08 0.85 2.82 71.24 0.20 1.05 16 17 O -0.54 4.83 12.77 -148.98 -1.90 2.93 16 18 Si 0.97 -8.45 25.07 68.60 1.72 -6.73 16 19 H -0.25 2.10 7.11 99.48 0.71 2.80 16 20 H -0.27 1.09 7.11 99.48 0.71 1.80 16 21 H -0.25 1.91 7.11 99.48 0.71 2.61 16 22 C -0.16 1.00 8.67 22.28 0.19 1.19 16 23 C -0.01 0.01 9.55 22.25 0.21 0.23 16 24 C -0.10 -0.52 6.87 36.47 0.25 -0.27 16 25 N 0.04 0.47 4.45 -46.24 -0.21 0.27 16 26 O -0.20 -2.75 18.45 18.88 0.35 -2.41 16 27 O -0.17 -2.87 17.24 25.60 0.44 -2.42 16 28 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 29 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.05 0.11 7.97 -2.39 -0.02 0.10 16 31 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 32 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 34 H 0.05 0.11 7.97 -2.39 -0.02 0.10 16 35 H 0.05 0.10 8.14 -2.38 -0.02 0.08 16 36 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 37 H 0.08 -0.44 7.48 -2.38 -0.02 -0.46 16 38 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 39 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 40 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 41 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 42 H 0.08 -0.44 7.48 -2.39 -0.02 -0.45 16 43 H 0.08 -0.72 7.21 -2.38 -0.02 -0.73 16 44 H 0.08 -0.71 7.21 -2.39 -0.02 -0.72 16 45 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.10 -0.95 7.66 -2.39 -0.02 -0.97 16 48 H 0.10 -0.92 7.66 -2.39 -0.02 -0.94 16 49 H 0.18 -1.93 6.30 -2.91 -0.02 -1.95 16 50 H 0.15 -1.90 7.96 -2.39 -0.02 -1.92 16 51 H 0.39 -5.77 8.70 -74.06 -0.64 -6.42 16 52 H 0.17 -1.71 4.87 -2.91 -0.01 -1.72 16 53 H 0.17 -0.60 7.61 -2.91 -0.02 -0.62 16 Total: 0.00 -19.70 429.04 5.74 -13.96 By element: Atomic # 1 Polarization: -11.99 SS G_CDS: 1.01 Total: -10.98 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.60 Total: 12.07 kcal Atomic # 7 Polarization: 0.47 SS G_CDS: -0.21 Total: 0.27 kcal Atomic # 8 Polarization: -1.42 SS G_CDS: -2.97 Total: -4.39 kcal Atomic # 14 Polarization: -13.22 SS G_CDS: 2.30 Total: -10.92 kcal Total: -19.70 5.74 -13.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2392260_18527724.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.636 kcal (2) G-P(sol) polarization free energy of solvation -19.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds