Wall clock time and date at job start Mon Mar 8 2021 13:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86300 * 109.47098 * 2 1 4 4 C 1.86297 * 109.46974 * 240.00164 * 2 1 3 5 5 C 1.86294 * 109.47134 * 120.00118 * 2 1 3 6 6 O 1.42908 * 109.47169 * 66.58537 * 5 2 1 7 7 C 1.35901 * 116.99395 * 282.04039 * 6 5 2 8 8 C 1.38711 * 120.06110 * 353.84507 * 7 6 5 9 9 C 1.38166 * 119.94674 * 179.97438 * 8 7 6 10 10 C 1.50699 * 119.97079 * 179.97438 * 9 8 7 11 11 O 1.42894 * 109.47302 * 300.02150 * 10 9 8 12 12 Si 1.86302 * 109.47033 * 180.02562 * 10 9 8 13 13 H 1.48504 * 109.46837 * 60.00122 * 12 10 9 14 14 H 1.48495 * 109.47090 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47265 * 300.00227 * 12 10 9 16 16 C 1.38246 * 120.05238 * 359.97438 * 9 8 7 17 17 C 1.38286 * 120.11539 * 0.02562 * 16 9 8 18 18 C 1.38126 * 120.05201 * 0.24951 * 17 16 9 19 19 N 1.48004 * 120.02283 * 179.74463 * 18 17 16 20 20 O 1.21800 * 120.00553 * 359.97438 * 19 18 17 21 21 O 1.21807 * 119.99823 * 180.02562 * 19 18 17 22 22 H 1.09002 * 109.46767 * 295.58558 * 1 2 3 23 23 H 1.09000 * 109.47237 * 55.58557 * 1 2 3 24 24 H 1.08996 * 109.46967 * 175.58506 * 1 2 3 25 25 H 1.09002 * 109.46740 * 180.02562 * 3 2 1 26 26 H 1.08992 * 109.47238 * 299.99828 * 3 2 1 27 27 H 1.09004 * 109.47060 * 60.00486 * 3 2 1 28 28 H 1.09004 * 109.47550 * 305.00431 * 4 2 1 29 29 H 1.09003 * 109.47059 * 65.00279 * 4 2 1 30 30 H 1.08997 * 109.47321 * 185.00044 * 4 2 1 31 31 H 1.08995 * 109.47379 * 306.58154 * 5 2 1 32 32 H 1.09007 * 109.47021 * 186.57869 * 5 2 1 33 33 H 1.08007 * 120.02404 * 0.02562 * 8 7 6 34 34 H 1.09001 * 109.47144 * 60.01864 * 10 9 8 35 35 H 0.96700 * 114.00500 * 180.02562 * 11 10 9 36 36 H 1.08007 * 119.93885 * 179.97438 * 16 9 8 37 37 H 1.07996 * 119.97282 * 179.97438 * 17 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5211 6 8 2.1380 -2.2628 1.4464 7 6 0.8531 -2.5942 1.7397 8 6 -0.0223 -1.6288 2.2148 9 6 -1.3283 -1.9682 2.5118 10 6 -2.2797 -0.9200 3.0285 11 8 -1.7756 -0.3808 4.2520 12 14 -3.9486 -1.6909 3.3307 13 1 -3.8173 -2.7779 4.3340 14 1 -4.8859 -0.6581 3.8405 15 1 -4.4725 -2.2514 2.0593 16 6 -1.7629 -3.2687 2.3353 17 6 -0.8921 -4.2330 1.8619 18 6 0.4160 -3.9000 1.5689 19 7 1.3489 -4.9338 1.0675 20 8 0.9634 -6.0789 0.9136 21 8 2.5024 -4.6397 0.8098 22 1 -0.3633 0.4438 0.9269 23 1 -0.3634 0.5808 -0.8478 24 1 -0.3633 -1.0246 -0.0791 25 1 3.5740 1.7564 -0.0005 26 1 2.1207 2.2703 -0.8899 27 1 2.1207 2.2703 0.8901 28 1 2.0493 -1.8767 -1.5672 29 1 2.1956 -0.3152 -2.4089 30 1 3.5703 -0.9564 -1.4776 31 1 2.0277 -0.4370 2.4071 32 1 3.5677 -0.7774 1.5819 33 1 0.3164 -0.6124 2.3516 34 1 -2.3759 -0.1220 2.2922 35 1 -2.3388 0.3013 4.6429 36 1 -2.7841 -3.5321 2.5685 37 1 -1.2340 -5.2483 1.7253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2392260_3095236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:52:05 Heat of formation + Delta-G solvation = -66.670477 kcal Electronic energy + Delta-G solvation = -21566.539402 eV Core-core repulsion = 18244.261433 eV Total energy + Delta-G solvation = -3322.277969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.28570 -41.61305 -39.34197 -37.65608 -37.46169 -33.71074 -31.91846 -29.76648 -28.87926 -28.47046 -28.34121 -27.98994 -25.51190 -23.74625 -22.78911 -20.66452 -19.77073 -18.82800 -18.62988 -18.38460 -17.56930 -16.96641 -16.73474 -16.07835 -15.98121 -14.97421 -14.68062 -14.40607 -14.23405 -14.05865 -13.93131 -13.86512 -13.41625 -13.28698 -13.22741 -13.07350 -12.93720 -12.72397 -12.67338 -12.64281 -12.26530 -12.16068 -11.96446 -11.84654 -10.97752 -10.91648 -10.86106 -10.72502 -10.29238 -9.54948 -1.29623 -0.15341 0.15751 0.37514 1.08432 1.42797 1.45787 1.52298 1.58969 1.78961 1.91843 2.04782 2.12550 2.50693 3.06301 3.20262 3.43110 3.62448 3.77621 3.88821 4.08398 4.25618 4.35095 4.52587 4.57553 4.65395 4.68908 4.72409 4.76382 4.79970 4.83754 4.85366 4.91244 5.08643 5.24814 5.48597 5.56199 5.62781 5.88176 6.49296 6.76246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.053 2.947 3 C -0.448 4.448 4 C -0.471 4.471 5 C -0.282 4.282 6 O -0.278 6.278 7 C 0.186 3.814 8 C -0.181 4.181 9 C 0.018 3.982 10 C -0.090 4.090 11 O -0.556 6.556 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.249 1.249 15 H -0.250 1.250 16 C -0.164 4.164 17 C -0.015 4.015 18 C -0.108 4.108 19 N 0.039 4.961 20 O -0.196 6.196 21 O -0.176 6.176 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.185 0.815 34 H 0.122 0.878 35 H 0.406 0.594 36 H 0.162 0.838 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 9.471 1.712 11.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.245 2.755 3 C -0.557 4.557 4 C -0.576 4.576 5 C -0.399 4.399 6 O -0.188 6.188 7 C 0.136 3.864 8 C -0.200 4.200 9 C 0.018 3.982 10 C -0.200 4.200 11 O -0.366 6.366 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.173 1.173 15 H -0.173 1.173 16 C -0.183 4.183 17 C -0.034 4.034 18 C -0.194 4.194 19 N 0.550 4.450 20 O -0.405 6.405 21 O -0.389 6.389 22 H 0.112 0.888 23 H 0.103 0.897 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.202 0.798 34 H 0.140 0.860 35 H 0.258 0.742 36 H 0.179 0.821 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.485 8.977 1.940 11.243 hybrid contribution 0.645 -0.205 -0.135 0.691 sum -5.840 8.772 1.805 10.691 Atomic orbital electron populations 1.26551 1.19737 1.04455 1.06372 0.78927 0.67350 0.66016 0.63193 1.26037 1.06745 1.17224 1.05713 1.26392 1.06508 1.07507 1.17182 1.28968 1.08990 0.83387 1.18521 1.86365 1.22156 1.29443 1.80816 1.18918 0.86122 0.90814 0.90553 1.21514 0.93211 1.01123 1.04125 1.19849 0.93867 0.93829 0.90689 1.24867 1.04730 0.99733 0.90638 1.86446 1.52910 1.60539 1.36736 0.85436 0.74410 0.80245 0.81084 1.19193 1.17285 1.17337 1.21161 1.01378 0.91767 1.03963 1.21046 0.88182 1.02808 0.91385 1.20812 0.92506 0.86674 1.19408 1.43701 1.01659 1.01804 0.97818 1.94501 1.81936 1.05769 1.58269 1.94583 1.03185 1.86850 1.54330 0.88769 0.89681 0.92194 0.90827 0.90313 0.89668 0.93306 0.90671 0.91376 0.88444 0.85441 0.79773 0.86005 0.74218 0.82075 0.80987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.53 7.04 113.37 0.80 4.33 16 2 Si 1.05 -7.37 11.68 68.60 0.80 -6.57 16 3 C -0.45 3.64 8.65 113.37 0.98 4.62 16 4 C -0.47 -0.04 8.65 113.37 0.98 0.94 16 5 C -0.28 1.00 5.31 113.37 0.60 1.60 16 6 O -0.28 -1.51 7.81 -71.29 -0.56 -2.06 16 7 C 0.19 0.81 5.77 22.51 0.13 0.94 16 8 C -0.18 0.37 5.21 22.37 0.12 0.49 16 9 C 0.02 -0.06 5.42 -19.88 -0.11 -0.17 16 10 C -0.09 0.80 2.81 71.24 0.20 1.00 16 11 O -0.56 4.55 12.74 -148.98 -1.90 2.65 16 12 Si 0.96 -7.21 25.07 68.60 1.72 -5.49 16 13 H -0.27 0.86 7.11 99.48 0.71 1.57 16 14 H -0.25 1.83 7.11 99.48 0.71 2.53 16 15 H -0.25 1.61 7.11 99.48 0.71 2.32 16 16 C -0.16 0.35 8.67 22.28 0.19 0.54 16 17 C -0.02 -0.03 9.55 22.25 0.21 0.18 16 18 C -0.11 -0.85 6.87 36.48 0.25 -0.60 16 19 N 0.04 0.58 4.45 -46.24 -0.21 0.37 16 20 O -0.20 -3.12 18.45 18.89 0.35 -2.77 16 21 O -0.18 -3.15 17.24 25.60 0.44 -2.71 16 22 H 0.09 -1.09 6.51 -2.39 -0.02 -1.10 16 23 H 0.08 -0.72 7.96 -2.39 -0.02 -0.74 16 24 H 0.06 -0.27 6.55 -2.39 -0.02 -0.28 16 25 H 0.07 -0.54 7.96 -2.39 -0.02 -0.56 16 26 H 0.08 -0.61 7.96 -2.39 -0.02 -0.63 16 27 H 0.08 -0.86 7.96 -2.38 -0.02 -0.88 16 28 H 0.05 0.22 7.96 -2.39 -0.02 0.20 16 29 H 0.07 -0.10 7.96 -2.39 -0.02 -0.11 16 30 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 31 H 0.10 -0.74 6.06 -2.39 -0.01 -0.76 16 32 H 0.13 -0.67 7.96 -2.38 -0.02 -0.69 16 33 H 0.19 -1.41 4.24 -2.91 -0.01 -1.43 16 34 H 0.12 -1.79 7.96 -2.39 -0.02 -1.81 16 35 H 0.41 -6.86 8.74 -74.06 -0.65 -7.50 16 36 H 0.16 -1.00 4.87 -2.91 -0.01 -1.02 16 37 H 0.17 -0.11 7.61 -2.91 -0.02 -0.13 16 Total: 0.00 -19.91 308.96 6.21 -13.69 By element: Atomic # 1 Polarization: -12.20 SS G_CDS: 1.21 Total: -10.99 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 4.36 Total: 13.87 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -0.21 Total: 0.37 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -1.66 Total: -4.89 kcal Atomic # 14 Polarization: -14.58 SS G_CDS: 2.52 Total: -12.06 kcal Total: -19.91 6.21 -13.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2392260_3095236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.976 kcal (2) G-P(sol) polarization free energy of solvation -19.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds