Wall clock time and date at job start Mon Mar 8 2021 14:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46915 * 2 1 4 4 C 1.53001 * 109.47640 * 240.00287 * 2 1 3 5 5 O 1.42897 * 109.47145 * 119.99788 * 2 1 3 6 6 C 1.42902 * 113.99813 * 60.00185 * 5 2 1 7 7 H 1.08998 * 112.90885 * 18.75042 * 6 5 2 8 8 C 1.53779 * 113.61539 * 149.99892 * 6 5 2 9 9 C 1.53778 * 87.08426 * 139.98179 * 8 6 5 10 10 H 1.08997 * 113.61328 * 89.19855 * 9 8 6 11 11 C 1.53003 * 113.61635 * 220.01982 * 9 8 6 12 12 O 1.42898 * 109.46854 * 184.99672 * 11 9 8 13 13 C 1.35871 * 116.99773 * 180.02562 * 12 11 9 14 14 C 1.38817 * 119.93465 * 179.97438 * 13 12 11 15 15 C 1.50700 * 119.96780 * 0.04261 * 14 13 12 16 16 O 1.42898 * 109.46935 * 74.99755 * 15 14 13 17 17 Si 1.86300 * 109.47023 * 195.00299 * 15 14 13 18 18 C 1.37921 * 120.06316 * 180.02562 * 14 13 12 19 19 C 1.39364 * 119.93567 * 359.74344 * 18 14 13 20 20 C 1.48365 * 120.06402 * 180.25572 * 19 18 14 21 21 C 1.39350 * 120.12459 * 359.97438 * 20 19 18 22 22 C 1.38007 * 119.87700 * 179.70011 * 21 20 19 23 23 C 1.38325 * 120.11998 * 0.60128 * 22 21 20 24 24 C 1.38322 * 120.25149 * 359.67050 * 23 22 21 25 25 C 1.38021 * 120.11610 * 0.03088 * 24 23 22 26 26 C 1.39392 * 119.86996 * 0.50988 * 19 18 14 27 27 C 1.37886 * 119.93239 * 359.48732 * 26 19 18 28 28 C 1.53777 * 113.61543 * 247.49589 * 6 5 2 29 29 H 1.09000 * 109.47164 * 299.99971 * 1 2 3 30 30 H 1.09007 * 109.47297 * 59.99741 * 1 2 3 31 31 H 1.08993 * 109.47445 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47017 * 179.97438 * 3 2 1 33 33 H 1.08990 * 109.47238 * 300.00000 * 3 2 1 34 34 H 1.09006 * 109.46753 * 60.00128 * 3 2 1 35 35 H 1.08999 * 109.46333 * 300.00398 * 4 2 1 36 36 H 1.09000 * 109.46617 * 59.99319 * 4 2 1 37 37 H 1.08993 * 109.47307 * 180.02562 * 4 2 1 38 38 H 1.09007 * 113.61340 * 25.43010 * 8 6 5 39 39 H 1.09000 * 113.61402 * 254.53322 * 8 6 5 40 40 H 1.08999 * 109.46915 * 65.00063 * 11 9 8 41 41 H 1.08993 * 109.47059 * 305.00271 * 11 9 8 42 42 H 1.09006 * 109.46905 * 315.00223 * 15 14 13 43 43 H 0.96700 * 113.99871 * 60.00336 * 16 15 14 44 44 H 1.48501 * 109.99539 * 180.02562 * 17 15 14 45 45 H 1.48501 * 109.99905 * 301.31422 * 17 15 14 46 46 H 1.07999 * 120.03228 * 179.97438 * 18 14 13 47 47 H 1.08007 * 120.05848 * 359.97438 * 21 20 19 48 48 H 1.08005 * 119.94183 * 180.29811 * 22 21 20 49 49 H 1.08008 * 119.87539 * 179.70076 * 23 22 21 50 50 H 1.07995 * 119.94132 * 180.02562 * 24 23 22 51 51 H 1.08000 * 120.05694 * 180.02562 * 25 24 23 52 52 H 1.08002 * 120.03652 * 179.77355 * 26 19 18 53 53 H 1.07999 * 119.96707 * 180.27653 * 27 26 19 54 54 H 1.08999 * 113.61527 * 105.46603 * 28 6 5 55 55 H 1.08998 * 113.61344 * 334.56951 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2645 7 1 1.2512 -2.4458 0.3113 8 6 2.5836 -2.9378 2.0078 9 6 1.3667 -3.6120 2.6631 10 1 0.9745 -4.4541 2.0930 11 6 1.5712 -3.9403 4.1435 12 8 0.4398 -4.6640 4.6315 13 6 0.4617 -5.0347 5.9384 14 6 -0.6062 -5.7399 6.4764 15 6 -1.7874 -6.0940 5.6101 16 8 -1.4332 -7.1692 4.7381 17 14 -3.2149 -6.6133 6.6886 18 6 -0.5870 -6.1170 7.8029 19 6 0.5082 -5.7942 8.6020 20 6 0.5343 -6.2035 10.0278 21 6 -0.5358 -6.9109 10.5721 22 6 -0.5033 -7.2945 11.8974 23 6 0.5832 -6.9670 12.6884 24 6 1.6456 -6.2600 12.1550 25 6 1.6265 -5.8767 10.8292 26 6 1.5767 -5.0815 8.0603 27 6 1.5519 -4.7071 6.7335 28 6 0.6076 -2.2963 2.4230 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6765 1.9564 0.8901 35 1 1.6767 -1.7488 -1.2492 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7215 -1.2490 38 1 3.2171 -2.3997 2.7130 39 1 3.1477 -3.5992 1.3501 40 1 1.6820 -3.0150 4.7088 41 1 2.4689 -4.5472 4.2604 42 1 -2.0766 -5.2259 5.0176 43 1 -1.1645 -7.9763 5.1980 44 1 -4.3859 -6.9657 5.8461 45 1 -2.8230 -7.7764 7.5246 46 1 -1.4183 -6.6653 8.2211 47 1 -1.3869 -7.1625 9.9567 48 1 -1.3300 -7.8470 12.3191 49 1 0.6022 -7.2650 13.7264 50 1 2.4916 -6.0073 12.7770 51 1 2.4568 -5.3250 10.4136 52 1 2.4251 -4.8267 8.6781 53 1 2.3814 -4.1588 6.3121 54 1 -0.4237 -2.4397 2.1006 55 1 0.7008 -1.5828 3.2417 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2516928_14598384.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:13:50 Heat of formation + Delta-G solvation = -31.709008 kcal Electronic energy + Delta-G solvation = -32973.913382 eV Core-core repulsion = 28715.798386 eV Total energy + Delta-G solvation = -4258.114996 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.202 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.65994 -40.89620 -40.05691 -38.87243 -37.95101 -37.56212 -33.95584 -33.36440 -32.84193 -31.72232 -30.06494 -28.94361 -28.36751 -28.24043 -26.85237 -26.62349 -24.73175 -24.01437 -23.49557 -22.16411 -21.61117 -20.81766 -20.59186 -19.45027 -18.31381 -17.87312 -17.75136 -17.23965 -17.04839 -16.75325 -16.36488 -16.13943 -15.96987 -15.70883 -15.61845 -15.39192 -15.25495 -14.97038 -14.58474 -14.47793 -14.41032 -14.18801 -14.13462 -14.00498 -13.48764 -13.43431 -13.33921 -13.25954 -13.13374 -12.98153 -12.83521 -12.75743 -12.65946 -12.46025 -12.30235 -12.12889 -12.07267 -11.90776 -11.76200 -11.66603 -11.57988 -11.36616 -11.19412 -10.56512 -10.37341 -10.24702 -10.06937 -9.86378 -8.68790 -4.97411 -0.27210 0.16419 0.49395 0.91408 1.26126 1.51657 1.88974 2.08985 2.51953 2.74119 3.06861 3.41278 3.45614 3.50540 3.55188 3.63687 3.73282 3.75984 3.80697 3.90215 3.97004 4.00764 4.04060 4.09097 4.12030 4.14502 4.18107 4.25118 4.32683 4.33470 4.44300 4.52220 4.53539 4.60738 4.61364 4.67215 4.69021 4.76409 4.77166 4.77815 4.82417 4.84377 4.90704 4.92977 4.96174 5.00374 5.11664 5.14284 5.15882 5.19626 5.21496 5.28377 5.30487 5.32206 5.37653 5.53413 5.62793 5.68353 5.73633 6.08275 6.36290 6.40777 6.49321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.379 6.379 6 C 0.060 3.940 7 H 0.098 0.902 8 C -0.121 4.121 9 C -0.103 4.103 10 H 0.100 0.900 11 C 0.068 3.932 12 O -0.315 6.315 13 C 0.145 3.855 14 C -0.156 4.156 15 C -0.071 4.071 16 O -0.544 6.544 17 Si 0.760 3.240 18 C -0.077 4.077 19 C -0.088 4.088 20 C -0.053 4.053 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.064 4.064 27 C -0.209 4.209 28 C -0.146 4.146 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.382 0.618 44 H -0.297 1.297 45 H -0.269 1.269 46 H 0.145 0.855 47 H 0.131 0.869 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.138 0.862 52 H 0.148 0.852 53 H 0.148 0.852 54 H 0.069 0.931 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 1.851 1.310 2.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.299 6.299 6 C 0.002 3.998 7 H 0.115 0.885 8 C -0.158 4.158 9 C -0.122 4.122 10 H 0.118 0.882 11 C -0.006 4.006 12 O -0.228 6.228 13 C 0.099 3.901 14 C -0.157 4.157 15 C -0.179 4.179 16 O -0.351 6.351 17 Si 0.664 3.336 18 C -0.095 4.095 19 C -0.089 4.089 20 C -0.053 4.053 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.082 4.082 27 C -0.227 4.227 28 C -0.184 4.184 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.231 0.769 44 H -0.225 1.225 45 H -0.195 1.195 46 H 0.162 0.838 47 H 0.149 0.851 48 H 0.158 0.842 49 H 0.156 0.844 50 H 0.158 0.842 51 H 0.156 0.844 52 H 0.166 0.834 53 H 0.166 0.834 54 H 0.087 0.913 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.606 1.737 1.031 2.109 hybrid contribution 0.723 -0.956 -0.572 1.328 sum 1.329 0.781 0.459 1.609 Atomic orbital electron populations 1.22440 0.95092 1.02565 1.03003 1.21678 0.93604 0.93462 0.85339 1.21790 1.01707 0.93132 1.02966 1.22449 1.01982 1.01047 0.97939 1.88007 1.74191 1.24012 1.43690 1.23646 0.95870 0.82416 0.97855 0.88467 1.23196 0.96147 0.97096 0.99409 1.22236 0.98562 0.97633 0.93745 0.88187 1.22956 0.87466 0.95716 0.94496 1.86121 1.43952 1.70134 1.22633 1.19052 0.93967 0.93607 0.83504 1.19561 0.97196 1.04227 0.94717 1.25046 1.01396 0.93159 0.98340 1.86603 1.88203 1.24398 1.35922 0.94165 0.74354 0.85773 0.79311 1.21134 0.98246 0.98280 0.91807 1.18721 0.95559 1.01785 0.92808 1.18852 0.95453 0.98973 0.92030 1.21441 0.98396 0.98750 0.96132 1.21389 0.99190 0.99842 0.93771 1.21556 0.93958 0.98405 1.00920 1.21410 0.99323 0.98105 0.95350 1.21464 0.98123 1.00405 0.94212 1.21308 0.97871 0.94624 0.94396 1.21439 0.99421 1.06657 0.95217 1.23572 0.99015 0.96385 0.99396 0.92382 0.90598 0.92299 0.92203 0.89781 0.92358 0.92003 0.90439 0.92075 0.88858 0.89606 0.90935 0.90886 0.87121 0.76927 1.22524 1.19465 0.83794 0.85112 0.84238 0.84364 0.84151 0.84407 0.83393 0.83442 0.91262 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.08 8.38 71.98 0.60 0.69 16 2 C 0.10 0.08 1.11 -10.79 -0.01 0.06 16 3 C -0.14 0.03 8.84 71.98 0.64 0.67 16 4 C -0.18 0.22 8.38 71.98 0.60 0.82 16 5 O -0.38 -1.49 10.00 -148.98 -1.49 -2.98 16 6 C 0.06 0.03 2.82 31.12 0.09 0.12 16 7 H 0.10 -0.08 5.55 -2.39 -0.01 -0.10 16 8 C -0.12 0.16 7.47 31.12 0.23 0.39 16 9 C -0.10 0.03 4.01 -10.27 -0.04 -0.01 16 10 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 11 C 0.07 0.02 4.57 71.98 0.33 0.35 16 12 O -0.32 -1.74 9.45 -92.11 -0.87 -2.62 16 13 C 0.14 0.71 6.66 22.56 0.15 0.86 16 14 C -0.16 -0.63 5.27 -19.80 -0.10 -0.74 16 15 C -0.07 -0.26 2.37 71.24 0.17 -0.10 16 16 O -0.54 -3.54 12.88 -148.98 -1.92 -5.46 16 17 Si 0.76 0.34 30.24 68.60 2.07 2.42 16 18 C -0.08 -0.20 8.03 22.47 0.18 -0.02 16 19 C -0.09 -0.27 5.88 -20.03 -0.12 -0.39 16 20 C -0.05 -0.16 5.88 -20.05 -0.12 -0.28 16 21 C -0.13 -0.28 9.43 22.48 0.21 -0.07 16 22 C -0.12 -0.10 10.03 22.24 0.22 0.13 16 23 C -0.13 -0.03 10.04 22.31 0.22 0.19 16 24 C -0.12 -0.03 10.03 22.24 0.22 0.19 16 25 C -0.12 -0.16 9.43 22.49 0.21 0.05 16 26 C -0.06 -0.08 9.42 22.46 0.21 0.13 16 27 C -0.21 -0.38 9.02 22.33 0.20 -0.18 16 28 C -0.15 -0.12 7.46 31.12 0.23 0.11 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.08 -0.19 8.14 -2.38 -0.02 -0.21 16 31 H 0.06 -0.03 7.02 -2.39 -0.02 -0.05 16 32 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 35 H 0.06 -0.11 6.25 -2.39 -0.01 -0.12 16 36 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.09 -0.10 8.10 -2.38 -0.02 -0.12 16 39 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.07 -0.09 7.36 -2.39 -0.02 -0.10 16 41 H 0.07 -0.12 7.65 -2.39 -0.02 -0.13 16 42 H 0.11 0.50 7.82 -2.38 -0.02 0.48 16 43 H 0.38 0.20 8.70 -74.06 -0.64 -0.45 16 44 H -0.30 -2.23 7.11 99.48 0.71 -1.53 16 45 H -0.27 -0.53 6.68 99.48 0.66 0.13 16 46 H 0.14 -0.03 2.99 -2.91 -0.01 -0.03 16 47 H 0.13 -0.08 6.20 -2.91 -0.02 -0.10 16 48 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 49 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 50 H 0.14 -0.53 8.06 -2.91 -0.02 -0.55 16 51 H 0.14 -0.36 6.20 -2.91 -0.02 -0.38 16 52 H 0.15 -0.46 6.20 -2.91 -0.02 -0.48 16 53 H 0.15 -0.31 6.28 -2.91 -0.02 -0.33 16 54 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 55 H 0.08 0.18 7.90 -2.39 -0.02 0.17 16 Total: 0.00 -13.56 430.73 2.38 -11.18 By element: Atomic # 1 Polarization: -5.75 SS G_CDS: 0.24 Total: -5.51 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.34 Total: 2.97 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -4.28 Total: -11.05 kcal Atomic # 14 Polarization: 0.34 SS G_CDS: 2.07 Total: 2.42 kcal Total: -13.56 2.38 -11.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2516928_14598384.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.531 kcal (2) G-P(sol) polarization free energy of solvation -13.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds