Wall clock time and date at job start Mon Mar 8 2021 14:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 C 1.52998 * 109.46897 * 239.99983 * 2 1 3 5 5 Si 1.86299 * 109.47115 * 120.00036 * 2 1 3 6 6 C 1.86300 * 109.47218 * 299.99959 * 5 2 1 7 7 C 1.86299 * 109.47041 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47127 * 59.99803 * 5 2 1 9 9 C 1.42904 * 113.99714 * 179.97438 * 8 5 2 10 10 C 1.53003 * 109.46768 * 180.02562 * 9 8 5 11 11 O 1.42899 * 109.47433 * 65.00151 * 10 9 8 12 12 C 1.35893 * 117.00392 * 179.97438 * 11 10 9 13 13 C 1.38736 * 120.05957 * 180.02562 * 12 11 10 14 14 C 1.38138 * 119.94337 * 180.30421 * 13 12 11 15 15 C 1.38270 * 120.05794 * 359.46080 * 14 13 12 16 16 C 1.50697 * 119.94421 * 180.26220 * 15 14 13 17 17 O 1.42906 * 109.46937 * 245.25362 * 16 15 14 18 18 Si 1.86302 * 109.47317 * 5.25234 * 16 15 14 19 19 H 1.48501 * 109.46902 * 60.00145 * 18 16 15 20 20 H 1.48499 * 109.47319 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47238 * 300.00423 * 18 16 15 22 22 C 1.38259 * 120.10998 * 0.51383 * 15 14 13 23 23 C 1.38146 * 120.05869 * 359.76954 * 22 15 14 24 24 H 1.09007 * 109.47314 * 299.99948 * 1 2 3 25 25 H 1.08995 * 109.47419 * 60.00140 * 1 2 3 26 26 H 1.08999 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47145 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46913 * 300.00170 * 3 2 1 29 29 H 1.08999 * 109.46762 * 59.99876 * 3 2 1 30 30 H 1.08993 * 109.47430 * 299.99740 * 4 2 1 31 31 H 1.08999 * 109.46923 * 60.00432 * 4 2 1 32 32 H 1.09002 * 109.46854 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47413 * 179.97438 * 6 5 2 34 34 H 1.09001 * 109.47590 * 300.00265 * 6 5 2 35 35 H 1.09003 * 109.47470 * 60.00152 * 6 5 2 36 36 H 1.09002 * 109.46940 * 299.99535 * 7 5 2 37 37 H 1.08999 * 109.47298 * 59.99630 * 7 5 2 38 38 H 1.09000 * 109.46883 * 179.97438 * 7 5 2 39 39 H 1.08997 * 109.47038 * 60.00556 * 9 8 5 40 40 H 1.09001 * 109.47414 * 300.00067 * 9 8 5 41 41 H 1.09002 * 109.47184 * 305.00405 * 10 9 8 42 42 H 1.09001 * 109.46987 * 185.00111 * 10 9 8 43 43 H 1.08002 * 120.02291 * 0.02562 * 13 12 11 44 44 H 1.08004 * 119.96766 * 179.69880 * 14 13 12 45 45 H 1.09001 * 109.47205 * 125.25472 * 16 15 14 46 46 H 0.96700 * 113.99400 * 60.00283 * 17 16 15 47 47 H 1.08006 * 119.97187 * 179.74376 * 22 15 14 48 48 H 1.07993 * 120.03340 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8775 1.5215 8 8 1.6073 -2.4159 1.5211 9 6 2.0295 -3.1816 2.6515 10 6 1.4645 -4.5997 2.5465 11 8 2.0329 -5.2561 1.4116 12 6 1.6342 -6.5333 1.1739 13 6 2.1463 -7.2307 0.0893 14 6 1.7346 -8.5267 -0.1538 15 6 0.8215 -9.1329 0.6891 16 6 0.3786 -10.5489 0.4249 17 8 -1.0131 -10.5601 0.1008 18 14 1.3537 -11.2490 -0.9999 19 1 2.8000 -11.2373 -0.6630 20 1 0.9178 -12.6445 -1.2598 21 1 1.1212 -10.4233 -2.2119 22 6 0.3101 -8.4403 1.7710 23 6 0.7140 -7.1420 2.0151 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2495 33 1 1.8929 -0.5141 3.9323 34 1 1.8933 1.0277 3.0423 35 1 0.4400 0.0000 3.0424 36 1 4.3776 -1.3912 0.6315 37 1 4.3770 0.1502 1.5217 38 1 4.3773 -1.3910 2.4117 39 1 1.6653 -2.7118 3.5651 40 1 3.1183 -3.2255 2.6745 41 1 0.3814 -4.5519 2.4339 42 1 1.7116 -5.1570 3.4501 43 1 2.8628 -6.7590 -0.5669 44 1 2.1294 -9.0682 -1.0008 45 1 0.5494 -11.1550 1.3147 46 1 -1.2387 -10.0397 -0.6824 47 1 -0.4062 -8.9146 2.4255 48 1 0.3140 -6.6013 2.8600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26799_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:14:26 Heat of formation + Delta-G solvation = -149.857671 kcal Electronic energy + Delta-G solvation = -24121.418166 eV Core-core repulsion = 20685.716697 eV Total energy + Delta-G solvation = -3435.701469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20205 -39.31089 -37.90553 -36.97537 -36.84668 -32.23571 -31.95995 -30.48469 -29.40868 -29.11933 -27.87900 -27.40351 -26.27031 -24.77361 -23.13513 -22.07219 -20.43741 -19.40422 -18.24900 -18.11390 -17.27136 -16.57853 -16.46576 -16.17602 -16.04662 -15.72460 -15.52676 -15.18895 -14.98746 -14.88133 -14.73605 -14.32517 -14.17899 -13.97483 -13.62321 -13.56301 -13.44805 -13.30139 -13.25974 -12.96882 -12.94268 -12.84422 -12.42857 -12.21938 -12.18600 -12.07311 -11.97885 -11.82173 -11.71611 -11.58511 -11.48893 -11.32462 -10.41541 -10.36418 -10.09579 -9.97975 -9.09731 0.33167 0.42307 1.19375 1.39403 1.45724 1.54139 1.70256 1.94173 2.01494 2.17758 2.39147 2.73849 3.52481 3.72137 3.77537 3.89652 3.95845 3.98189 4.09813 4.10580 4.13323 4.21450 4.30391 4.38248 4.46051 4.55358 4.62016 4.65538 4.66835 4.69049 4.71234 4.72758 4.79319 4.84567 4.98654 5.04573 5.09100 5.09771 5.15471 5.25238 5.30476 5.33226 5.38803 5.40066 5.48184 5.50055 5.54699 5.57216 5.76584 6.46092 6.58949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.286 2.714 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.619 6.619 9 C 0.086 3.914 10 C 0.056 3.944 11 O -0.303 6.303 12 C 0.139 3.861 13 C -0.147 4.147 14 C -0.085 4.085 15 C -0.162 4.162 16 C -0.075 4.075 17 O -0.540 6.540 18 Si 0.948 3.052 19 H -0.250 1.250 20 H -0.255 1.255 21 H -0.252 1.252 22 C -0.048 4.048 23 C -0.211 4.211 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.376 0.624 47 H 0.130 0.870 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 1.199 1.899 2.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.613 4.613 8 O -0.578 6.578 9 C 0.011 3.989 10 C -0.019 4.019 11 O -0.216 6.216 12 C 0.093 3.907 13 C -0.166 4.166 14 C -0.103 4.103 15 C -0.162 4.162 16 C -0.185 4.185 17 O -0.346 6.346 18 Si 0.771 3.229 19 H -0.174 1.174 20 H -0.179 1.179 21 H -0.176 1.176 22 C -0.066 4.066 23 C -0.230 4.230 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.133 0.867 46 H 0.223 0.777 47 H 0.147 0.853 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.053 0.416 1.488 1.870 hybrid contribution -0.078 1.098 0.252 1.129 sum 0.976 1.514 1.740 2.504 Atomic orbital electron populations 1.21511 0.93841 1.01987 1.01765 1.25772 1.00651 1.02588 1.12748 1.21556 1.00780 0.94917 1.02128 1.21507 1.00612 1.00314 0.96679 0.76733 0.63105 0.53356 0.65033 1.27048 1.07026 1.09601 1.17698 1.27027 1.25008 1.04674 1.04544 1.85410 1.79059 1.45989 1.47320 1.22087 0.99341 0.89778 0.87713 1.23019 0.99184 0.91899 0.87781 1.86142 1.64757 1.23581 1.47113 1.19072 0.93424 0.83963 0.94255 1.20364 1.03661 0.94486 0.98069 1.20859 0.96513 0.94454 0.98465 1.20171 1.00765 0.97407 0.97897 1.24885 0.88220 0.96003 1.09438 1.86509 1.22448 1.74475 1.51124 0.85715 0.79241 0.80392 0.77542 1.17404 1.17918 1.17564 1.20797 0.97039 0.93056 0.95748 1.21326 1.02112 0.97279 1.02235 0.92738 0.92790 0.92183 0.92515 0.92498 0.92546 0.92067 0.92840 0.92710 0.91515 0.90628 0.90847 0.90768 0.90755 0.91519 0.90420 0.91421 0.90675 0.90619 0.84800 0.85678 0.86653 0.77680 0.85254 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.02 7.85 37.16 0.29 0.27 16 2 C -0.37 0.07 0.53 -90.62 -0.05 0.02 16 3 C -0.14 0.08 7.85 37.16 0.29 0.37 16 4 C -0.13 -0.06 7.85 37.16 0.29 0.23 16 5 Si 1.29 -1.49 8.45 -169.99 -1.44 -2.93 16 6 C -0.51 0.63 8.50 101.05 0.86 1.49 16 7 C -0.51 0.33 8.50 101.05 0.86 1.19 16 8 O -0.62 -0.20 8.52 -40.08 -0.34 -0.55 16 9 C 0.09 -0.12 5.51 37.16 0.20 0.08 16 10 C 0.06 -0.05 5.12 37.16 0.19 0.14 16 11 O -0.30 -0.64 10.10 -24.25 -0.24 -0.88 16 12 C 0.14 0.28 6.69 -39.21 -0.26 0.02 16 13 C -0.15 -0.25 9.99 -39.43 -0.39 -0.64 16 14 C -0.09 -0.08 8.66 -39.61 -0.34 -0.43 16 15 C -0.16 -0.13 5.35 -104.60 -0.56 -0.69 16 16 C -0.07 0.01 2.80 36.00 0.10 0.11 16 17 O -0.54 -0.33 12.83 -35.23 -0.45 -0.78 16 18 Si 0.95 -0.31 25.14 -169.99 -4.27 -4.58 16 19 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 20 H -0.26 -0.30 7.11 56.52 0.40 0.10 16 21 H -0.25 0.05 7.03 56.52 0.40 0.44 16 22 C -0.05 -0.04 9.68 -39.61 -0.38 -0.42 16 23 C -0.21 -0.18 9.04 -39.43 -0.36 -0.54 16 24 H 0.05 -0.03 7.79 -51.92 -0.40 -0.44 16 25 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 27 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 28 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 30 H 0.06 0.06 7.96 -51.93 -0.41 -0.35 16 31 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.05 0.00 7.79 -51.93 -0.40 -0.41 16 33 H 0.07 -0.12 7.48 -51.93 -0.39 -0.51 16 34 H 0.07 -0.10 7.79 -51.93 -0.40 -0.51 16 35 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 36 H 0.07 0.00 7.79 -51.93 -0.40 -0.41 16 37 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 38 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 39 H 0.08 -0.30 7.21 -51.93 -0.37 -0.67 16 40 H 0.07 -0.14 7.21 -51.93 -0.37 -0.52 16 41 H 0.08 -0.09 7.66 -51.93 -0.40 -0.49 16 42 H 0.08 -0.22 7.66 -51.93 -0.40 -0.62 16 43 H 0.13 0.09 8.06 -52.49 -0.42 -0.34 16 44 H 0.13 -0.06 4.86 -52.48 -0.25 -0.31 16 45 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 46 H 0.38 -0.91 8.70 45.56 0.40 -0.52 16 47 H 0.13 -0.03 8.06 -52.48 -0.42 -0.45 16 48 H 0.13 -0.14 6.30 -52.49 -0.33 -0.47 16 LS Contribution 381.52 15.07 5.75 5.75 Total: 0.00 -5.21 381.52 -8.16 -13.37 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: -7.90 Total: -10.61 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.74 Total: 1.21 kcal Atomic # 8 Polarization: -1.17 SS G_CDS: -1.04 Total: -2.21 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: -5.71 Total: -7.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -5.21 -8.16 -13.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.487 kcal (2) G-P(sol) polarization free energy of solvation -5.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds