Wall clock time and date at job start Mon Mar 8 2021 13:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86304 * 109.47104 * 2 1 4 4 C 1.50703 * 109.47297 * 120.00027 * 2 1 3 5 5 C 1.38264 * 119.94311 * 64.99802 * 4 2 1 6 6 C 1.38146 * 120.05387 * 180.02562 * 5 4 2 7 7 C 1.38733 * 119.94563 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.05781 * 180.02562 * 7 6 5 9 9 C 1.42892 * 117.00240 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47481 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.47019 * 180.02562 * 10 9 8 12 12 O 1.42970 * 109.46535 * 300.00320 * 10 9 8 13 13 C 1.43093 * 113.76745 * 178.79544 * 12 10 9 14 14 C 1.53251 * 108.93979 * 302.02446 * 13 12 10 15 15 H 1.08994 * 109.68806 * 294.65043 * 14 13 12 16 16 N 1.46505 * 109.57458 * 174.33465 * 14 13 12 17 17 C 1.34530 * 124.45965 * 300.64077 * 16 14 13 18 18 O 1.21450 * 125.70736 * 0.03198 * 17 16 14 19 19 C 1.47810 * 108.58125 * 180.02562 * 17 16 14 20 20 C 1.40947 * 105.88120 * 0.02562 * 19 17 16 21 21 C 1.38567 * 119.82052 * 179.73115 * 20 19 17 22 22 C 1.38612 * 119.71686 * 0.54254 * 21 20 19 23 23 C 1.38230 * 120.46000 * 359.45160 * 22 21 20 24 24 C 1.38565 * 134.29591 * 179.97438 * 19 17 16 25 25 C 1.34524 * 124.46531 * 120.64358 * 16 14 13 26 26 O 1.21452 * 125.70262 * 359.97438 * 25 16 14 27 27 C 1.53257 * 108.84819 * 54.52774 * 14 13 12 28 28 O 1.42963 * 109.47170 * 59.99272 * 10 9 8 29 29 C 1.38736 * 119.88604 * 0.28039 * 7 6 5 30 30 C 1.38143 * 119.94631 * 359.46399 * 29 7 6 31 31 H 0.96701 * 114.00076 * 300.00215 * 1 2 3 32 32 H 1.09001 * 109.47239 * 240.00355 * 2 1 3 33 33 H 1.48498 * 110.00001 * 178.67930 * 3 2 1 34 34 H 1.48502 * 109.99787 * 300.00009 * 3 2 1 35 35 H 1.07999 * 119.97186 * 359.97438 * 5 4 2 36 36 H 1.08000 * 120.02902 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47049 * 59.99966 * 9 8 7 38 38 H 1.09008 * 109.47176 * 300.00130 * 9 8 7 39 39 H 1.08999 * 109.55973 * 182.18934 * 13 12 10 40 40 H 1.09005 * 109.56056 * 61.86298 * 13 12 10 41 41 H 1.07998 * 120.14218 * 180.27080 * 21 20 19 42 42 H 1.08002 * 119.77228 * 179.73299 * 22 21 20 43 43 H 1.08008 * 119.76977 * 180.29990 * 23 22 21 44 44 H 1.08001 * 120.13921 * 0.02562 * 24 19 17 45 45 H 1.09002 * 109.56033 * 65.30715 * 27 14 13 46 46 H 1.08999 * 109.56643 * 185.53031 * 27 14 13 47 47 H 1.08001 * 120.02452 * 179.72554 * 29 7 6 48 48 H 1.07996 * 119.97527 * 180.23507 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6841 -2.0605 1.3972 6 6 2.1431 -2.7139 2.5245 7 6 2.8532 -2.0144 3.4895 8 8 3.3063 -2.6550 4.5991 9 6 4.0294 -1.8717 5.5506 10 6 4.4558 -2.7583 6.7224 11 1 5.0070 -2.1607 7.4484 12 8 3.2956 -3.3144 7.3460 13 6 3.5915 -4.1851 8.4423 14 6 4.4897 -5.3230 7.9454 15 1 3.9418 -5.9383 7.2317 16 7 4.9117 -6.1468 9.0809 17 6 5.6050 -5.6876 10.1385 18 8 5.9740 -4.5420 10.3008 19 6 5.8423 -6.8106 11.0697 20 6 5.2410 -7.9383 10.4753 21 6 5.2984 -9.1668 11.1138 22 6 5.9378 -9.2752 12.3388 23 6 6.5276 -8.1693 12.9218 24 6 6.4838 -6.9355 12.2916 25 6 4.6572 -7.4621 9.2036 26 8 4.0500 -8.1442 8.4029 27 6 5.7219 -4.7192 7.2630 28 8 5.2907 -3.8146 6.2416 29 6 3.0955 -0.6586 3.3223 30 6 2.6389 -0.0109 2.1907 31 1 -0.3933 0.4417 0.7650 32 1 1.7924 -0.5138 -0.8900 33 1 3.5346 1.7703 0.0322 34 1 1.5615 2.4679 -1.2085 35 1 1.1309 -2.6045 0.6459 36 1 1.9500 -3.7685 2.6542 37 1 3.3929 -1.0662 5.9169 38 1 4.9141 -1.4481 5.0752 39 1 2.6649 -4.5988 8.8401 40 1 4.1083 -3.6265 9.2228 41 1 4.8432 -10.0351 10.6609 42 1 5.9793 -10.2314 12.8393 43 1 7.0271 -8.2675 13.8744 44 1 6.9467 -6.0749 12.7515 45 1 6.3194 -4.1809 7.9987 46 1 6.3200 -5.5150 6.8190 47 1 3.6442 -0.1109 4.0742 48 1 2.8306 1.0436 2.0583 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26799_13594088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:44:42 Heat of formation + Delta-G solvation = -118.855766 kcal Electronic energy + Delta-G solvation = -36421.926136 eV Core-core repulsion = 31376.031741 eV Total energy + Delta-G solvation = -5045.894395 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.69217 -41.49020 -40.89859 -39.83335 -39.64185 -38.99713 -37.18524 -37.01350 -36.97253 -34.58778 -32.46539 -32.38250 -31.81626 -31.28260 -29.73143 -27.41719 -26.36229 -26.28195 -25.55215 -24.59181 -23.57704 -23.22824 -22.50060 -22.02108 -21.02343 -19.43896 -19.05567 -19.01037 -18.72368 -18.25471 -17.82256 -17.58109 -17.39342 -16.92805 -16.69402 -16.53002 -16.47298 -16.19366 -16.06965 -16.02275 -15.74638 -15.62552 -15.47298 -15.25816 -15.18197 -14.68176 -14.67345 -14.59216 -14.38835 -14.19068 -13.99909 -13.62028 -13.55234 -13.47983 -13.37404 -12.88279 -12.61553 -12.40147 -12.13119 -12.09248 -11.99069 -11.93334 -11.72065 -11.66619 -11.56987 -10.88551 -10.77566 -10.46871 -10.43794 -10.35910 -9.96837 -9.10848 -5.01038 -1.18211 -0.27649 0.37572 0.38803 0.79248 0.90726 1.34395 1.65891 1.66425 2.00803 2.07494 2.24879 2.31889 2.36380 2.36992 2.74654 3.05038 3.20459 3.29638 3.34917 3.48914 3.54236 3.67583 3.71472 3.74282 3.83518 3.84831 3.86812 3.94295 3.96480 4.01290 4.07086 4.12160 4.12828 4.16449 4.32121 4.34870 4.48288 4.51176 4.52957 4.55776 4.61141 4.68541 4.74404 4.87676 4.97633 5.02606 5.23738 5.31921 5.34250 5.39700 5.48406 5.57771 5.78798 5.80308 5.96363 6.40691 6.42268 6.63670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.062 4.062 3 Si 0.684 3.316 4 C -0.161 4.161 5 C -0.051 4.051 6 C -0.148 4.148 7 C 0.138 3.862 8 O -0.293 6.293 9 C 0.076 3.924 10 C 0.245 3.755 11 H 0.086 0.914 12 O -0.369 6.369 13 C 0.048 3.952 14 C 0.075 3.925 15 H 0.130 0.870 16 N -0.570 5.570 17 C 0.576 3.424 18 O -0.460 6.460 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.042 4.042 22 C -0.092 4.092 23 C -0.094 4.094 24 C -0.042 4.042 25 C 0.576 3.424 26 O -0.452 6.452 27 C 0.048 3.952 28 O -0.369 6.369 29 C -0.208 4.208 30 C -0.074 4.074 31 H 0.379 0.621 32 H 0.112 0.888 33 H -0.259 1.259 34 H -0.255 1.255 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.131 0.869 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -0.335 7.969 8.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.173 4.173 3 Si 0.586 3.414 4 C -0.161 4.161 5 C -0.069 4.069 6 C -0.167 4.167 7 C 0.092 3.908 8 O -0.206 6.206 9 C 0.001 3.999 10 C 0.150 3.850 11 H 0.103 0.897 12 O -0.288 6.288 13 C -0.029 4.029 14 C -0.027 4.027 15 H 0.148 0.852 16 N -0.316 5.316 17 C 0.366 3.634 18 O -0.331 6.331 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.061 4.061 22 C -0.110 4.110 23 C -0.112 4.112 24 C -0.060 4.060 25 C 0.365 3.635 26 O -0.322 6.322 27 C -0.029 4.029 28 O -0.288 6.288 29 C -0.226 4.226 30 C -0.091 4.091 31 H 0.226 0.774 32 H 0.129 0.871 33 H -0.183 1.183 34 H -0.180 1.180 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.149 0.851 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.864 0.111 6.329 6.948 hybrid contribution 0.418 -0.549 0.290 0.749 sum 3.283 -0.438 6.619 7.401 Atomic orbital electron populations 1.86501 1.17242 1.81713 1.49223 1.24964 0.85124 1.09826 0.97430 0.94855 0.81001 0.78317 0.87222 1.20214 1.02865 0.95210 0.97838 1.20839 0.96413 0.93461 0.96228 1.20516 1.01531 1.00942 0.93713 1.19084 0.93827 0.90920 0.86945 1.86227 1.68496 1.37109 1.28731 1.22864 0.96903 0.92847 0.87327 1.23632 0.81989 0.87381 0.92023 0.89683 1.88263 1.31232 1.62371 1.46937 1.23022 1.00673 0.90053 0.89193 1.22656 0.98403 0.94065 0.87594 0.85223 1.46459 1.52497 1.11253 1.21347 1.18457 0.76198 0.87871 0.80910 1.90813 1.47769 1.19078 1.75419 1.20462 1.03161 0.93774 0.97242 1.20471 1.02445 0.95622 0.95798 1.20873 0.95659 0.95757 0.93786 1.21564 0.95319 0.99850 0.94278 1.21559 0.97602 0.91745 1.00254 1.20856 0.94874 0.98650 0.91642 1.18418 0.78302 0.80854 0.85944 1.90862 1.36168 1.59228 1.45927 1.23016 0.94336 0.93994 0.91599 1.88261 1.66572 1.39960 1.34042 1.21179 1.06967 0.93782 1.00718 1.20749 0.96458 0.98898 0.93040 0.77424 0.87088 1.18350 1.18019 0.84976 0.84842 0.89148 0.89262 0.87243 0.90701 0.83748 0.83685 0.83703 0.83803 0.90767 0.87268 0.85112 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.55 12.83 -35.23 -0.45 -1.00 16 2 C -0.06 -0.04 2.80 36.01 0.10 0.07 16 3 Si 0.68 -0.30 29.80 -169.99 -5.07 -5.37 16 4 C -0.16 -0.18 5.35 -104.60 -0.56 -0.74 16 5 C -0.05 -0.09 9.68 -39.61 -0.38 -0.47 16 6 C -0.15 -0.36 9.99 -39.43 -0.39 -0.76 16 7 C 0.14 0.34 6.69 -39.21 -0.26 0.08 16 8 O -0.29 -0.93 9.92 -39.91 -0.40 -1.32 16 9 C 0.08 0.01 4.83 37.16 0.18 0.19 16 10 C 0.24 0.23 3.59 37.16 0.13 0.37 16 11 H 0.09 -0.10 8.14 -51.93 -0.42 -0.53 16 12 O -0.37 -0.86 10.43 -63.56 -0.66 -1.52 16 13 C 0.05 0.04 6.32 37.29 0.24 0.28 16 14 C 0.07 0.09 3.08 -67.67 -0.21 -0.12 16 15 H 0.13 0.27 7.59 -51.93 -0.39 -0.12 16 16 N -0.57 -0.59 2.53 -110.23 -0.28 -0.86 16 17 C 0.58 0.59 7.35 -12.46 -0.09 0.50 16 18 O -0.46 -1.19 15.16 5.41 0.08 -1.11 16 19 C -0.14 0.05 6.40 -104.84 -0.67 -0.62 16 20 C -0.14 0.02 6.40 -104.83 -0.67 -0.65 16 21 C -0.04 0.09 10.09 -39.32 -0.40 -0.31 16 22 C -0.09 0.36 10.04 -39.45 -0.40 -0.04 16 23 C -0.09 0.37 10.04 -39.45 -0.40 -0.02 16 24 C -0.04 0.10 10.09 -39.32 -0.40 -0.30 16 25 C 0.58 1.01 8.02 -12.46 -0.10 0.91 16 26 O -0.45 -1.99 17.44 5.41 0.09 -1.90 16 27 C 0.05 0.05 6.33 37.29 0.24 0.28 16 28 O -0.37 -0.90 10.43 -63.56 -0.66 -1.56 16 29 C -0.21 -0.14 9.04 -39.43 -0.36 -0.50 16 30 C -0.07 -0.02 8.66 -39.60 -0.34 -0.37 16 31 H 0.38 -1.06 8.70 45.56 0.40 -0.67 16 32 H 0.11 0.11 7.96 -51.93 -0.41 -0.30 16 33 H -0.26 -0.50 7.11 56.52 0.40 -0.09 16 34 H -0.26 -0.71 7.11 56.52 0.40 -0.31 16 35 H 0.13 0.12 8.06 -52.49 -0.42 -0.30 16 36 H 0.13 0.26 8.06 -52.49 -0.42 -0.17 16 37 H 0.09 -0.16 7.65 -51.93 -0.40 -0.56 16 38 H 0.09 -0.14 7.67 -51.92 -0.40 -0.54 16 39 H 0.11 0.02 8.14 -51.93 -0.42 -0.41 16 40 H 0.07 0.06 6.65 -51.93 -0.35 -0.29 16 41 H 0.14 -0.48 8.06 -52.49 -0.42 -0.91 16 42 H 0.15 -0.91 8.06 -52.49 -0.42 -1.33 16 43 H 0.15 -0.92 8.06 -52.48 -0.42 -1.35 16 44 H 0.14 -0.54 8.06 -52.49 -0.42 -0.97 16 45 H 0.07 0.06 6.70 -51.93 -0.35 -0.29 16 46 H 0.11 0.03 8.14 -51.93 -0.42 -0.40 16 47 H 0.13 -0.22 6.30 -52.49 -0.33 -0.55 16 48 H 0.13 -0.24 4.90 -52.49 -0.26 -0.50 16 LS Contribution 404.44 15.07 6.09 6.09 Total: 0.00 -9.86 404.44 -11.48 -21.34 By element: Atomic # 1 Polarization: -5.08 SS G_CDS: -5.49 Total: -10.57 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -4.74 Total: -2.21 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -0.28 Total: -0.86 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -2.00 Total: -8.42 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: -5.07 Total: -5.37 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -9.86 -11.48 -21.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_13594088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.520 kcal (2) G-P(sol) polarization free energy of solvation -9.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds