Wall clock time and date at job start Mon Mar 8 2021 13:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86304 * 109.47104 * 2 1 4 4 C 1.50703 * 109.47297 * 120.00027 * 2 1 3 5 5 C 1.38264 * 119.94311 * 64.99802 * 4 2 1 6 6 C 1.38146 * 120.05387 * 180.02562 * 5 4 2 7 7 C 1.38733 * 119.94563 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.05781 * 180.02562 * 7 6 5 9 9 C 1.42892 * 117.00240 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47481 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.47019 * 180.02562 * 10 9 8 12 12 O 1.42970 * 109.46535 * 300.00320 * 10 9 8 13 13 C 1.43093 * 113.76745 * 178.79544 * 12 10 9 14 14 C 1.53251 * 108.93979 * 302.02446 * 13 12 10 15 15 H 1.08994 * 109.68806 * 294.65043 * 14 13 12 16 16 N 1.46505 * 109.57458 * 174.33465 * 14 13 12 17 17 C 1.34530 * 124.45965 * 300.64077 * 16 14 13 18 18 O 1.21450 * 125.70736 * 0.03198 * 17 16 14 19 19 C 1.47810 * 108.58125 * 180.02562 * 17 16 14 20 20 C 1.40947 * 105.88120 * 0.02562 * 19 17 16 21 21 C 1.38567 * 119.82052 * 179.73115 * 20 19 17 22 22 C 1.38612 * 119.71686 * 0.54254 * 21 20 19 23 23 C 1.38230 * 120.46000 * 359.45160 * 22 21 20 24 24 C 1.38565 * 134.29591 * 179.97438 * 19 17 16 25 25 C 1.34524 * 124.46531 * 120.64358 * 16 14 13 26 26 O 1.21452 * 125.70262 * 359.97438 * 25 16 14 27 27 C 1.53257 * 108.84819 * 54.52774 * 14 13 12 28 28 O 1.42963 * 109.47170 * 59.99272 * 10 9 8 29 29 C 1.38736 * 119.88604 * 0.28039 * 7 6 5 30 30 C 1.38143 * 119.94631 * 359.46399 * 29 7 6 31 31 H 0.96701 * 114.00076 * 300.00215 * 1 2 3 32 32 H 1.09001 * 109.47239 * 240.00355 * 2 1 3 33 33 H 1.48498 * 110.00001 * 178.67930 * 3 2 1 34 34 H 1.48502 * 109.99787 * 300.00009 * 3 2 1 35 35 H 1.07999 * 119.97186 * 359.97438 * 5 4 2 36 36 H 1.08000 * 120.02902 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47049 * 59.99966 * 9 8 7 38 38 H 1.09008 * 109.47176 * 300.00130 * 9 8 7 39 39 H 1.08999 * 109.55973 * 182.18934 * 13 12 10 40 40 H 1.09005 * 109.56056 * 61.86298 * 13 12 10 41 41 H 1.07998 * 120.14218 * 180.27080 * 21 20 19 42 42 H 1.08002 * 119.77228 * 179.73299 * 22 21 20 43 43 H 1.08008 * 119.76977 * 180.29990 * 23 22 21 44 44 H 1.08001 * 120.13921 * 0.02562 * 24 19 17 45 45 H 1.09002 * 109.56033 * 65.30715 * 27 14 13 46 46 H 1.08999 * 109.56643 * 185.53031 * 27 14 13 47 47 H 1.08001 * 120.02452 * 179.72554 * 29 7 6 48 48 H 1.07996 * 119.97527 * 180.23507 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6841 -2.0605 1.3972 6 6 2.1431 -2.7139 2.5245 7 6 2.8532 -2.0144 3.4895 8 8 3.3063 -2.6550 4.5991 9 6 4.0294 -1.8717 5.5506 10 6 4.4558 -2.7583 6.7224 11 1 5.0070 -2.1607 7.4484 12 8 3.2956 -3.3144 7.3460 13 6 3.5915 -4.1851 8.4423 14 6 4.4897 -5.3230 7.9454 15 1 3.9418 -5.9383 7.2317 16 7 4.9117 -6.1468 9.0809 17 6 5.6050 -5.6876 10.1385 18 8 5.9740 -4.5420 10.3008 19 6 5.8423 -6.8106 11.0697 20 6 5.2410 -7.9383 10.4753 21 6 5.2984 -9.1668 11.1138 22 6 5.9378 -9.2752 12.3388 23 6 6.5276 -8.1693 12.9218 24 6 6.4838 -6.9355 12.2916 25 6 4.6572 -7.4621 9.2036 26 8 4.0500 -8.1442 8.4029 27 6 5.7219 -4.7192 7.2630 28 8 5.2907 -3.8146 6.2416 29 6 3.0955 -0.6586 3.3223 30 6 2.6389 -0.0109 2.1907 31 1 -0.3933 0.4417 0.7650 32 1 1.7924 -0.5138 -0.8900 33 1 3.5346 1.7703 0.0322 34 1 1.5615 2.4679 -1.2085 35 1 1.1309 -2.6045 0.6459 36 1 1.9500 -3.7685 2.6542 37 1 3.3929 -1.0662 5.9169 38 1 4.9141 -1.4481 5.0752 39 1 2.6649 -4.5988 8.8401 40 1 4.1083 -3.6265 9.2228 41 1 4.8432 -10.0351 10.6609 42 1 5.9793 -10.2314 12.8393 43 1 7.0271 -8.2675 13.8744 44 1 6.9467 -6.0749 12.7515 45 1 6.3194 -4.1809 7.9987 46 1 6.3200 -5.5150 6.8190 47 1 3.6442 -0.1109 4.0742 48 1 2.8306 1.0436 2.0583 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26799_13594088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:44:40 Heat of formation + Delta-G solvation = -118.033240 kcal Electronic energy + Delta-G solvation = -36421.890469 eV Core-core repulsion = 31376.031741 eV Total energy + Delta-G solvation = -5045.858728 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.134 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.73012 -41.56006 -40.96694 -39.97547 -39.52749 -39.06484 -37.29006 -37.10019 -37.09700 -34.57811 -32.50060 -32.17841 -31.85357 -31.29136 -29.74665 -27.51829 -26.37404 -26.34565 -25.50609 -24.59566 -23.50599 -23.28031 -22.51959 -22.06285 -21.02832 -19.49675 -19.15010 -18.99415 -18.78526 -18.29903 -17.80385 -17.67247 -17.39422 -16.98628 -16.75426 -16.59280 -16.52811 -16.22370 -16.16326 -15.92587 -15.80062 -15.52382 -15.50320 -15.35143 -15.08246 -14.79848 -14.74875 -14.64880 -14.46867 -14.32292 -13.82721 -13.66149 -13.51904 -13.45447 -13.29476 -12.72378 -12.66325 -12.49347 -12.26870 -12.21643 -12.04771 -11.97335 -11.73743 -11.71282 -11.65207 -10.97965 -10.88091 -10.40607 -10.27397 -10.26122 -10.04717 -9.20247 -5.00068 -1.13359 -0.07599 0.28947 0.30494 0.85247 0.86807 1.33232 1.59444 1.64380 1.97184 2.04544 2.18625 2.28550 2.42753 2.55724 2.66145 3.05010 3.13511 3.20242 3.45880 3.52241 3.56191 3.65571 3.70184 3.80770 3.83658 3.89842 3.97162 4.02378 4.02742 4.12645 4.13408 4.15832 4.19330 4.23990 4.31363 4.39933 4.42718 4.44056 4.48879 4.53328 4.68578 4.79093 4.86245 4.96852 5.16254 5.17116 5.23754 5.26693 5.32410 5.41124 5.49251 5.64021 5.72493 5.72671 5.89888 6.32088 6.36285 6.78871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.072 4.072 3 Si 0.779 3.221 4 C -0.165 4.165 5 C -0.061 4.061 6 C -0.167 4.167 7 C 0.123 3.877 8 O -0.318 6.318 9 C 0.069 3.931 10 C 0.236 3.764 11 H 0.109 0.891 12 O -0.385 6.385 13 C 0.052 3.948 14 C 0.076 3.924 15 H 0.113 0.887 16 N -0.569 5.569 17 C 0.577 3.423 18 O -0.479 6.479 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.045 4.045 22 C -0.084 4.084 23 C -0.083 4.083 24 C -0.042 4.042 25 C 0.575 3.425 26 O -0.491 6.491 27 C 0.052 3.948 28 O -0.387 6.387 29 C -0.205 4.205 30 C -0.074 4.074 31 H 0.395 0.605 32 H 0.103 0.897 33 H -0.285 1.285 34 H -0.301 1.301 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.152 0.848 42 H 0.176 0.824 43 H 0.177 0.823 44 H 0.157 0.843 45 H 0.077 0.923 46 H 0.111 0.889 47 H 0.158 0.842 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 0.204 10.229 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.181 4.181 3 Si 0.685 3.315 4 C -0.165 4.165 5 C -0.079 4.079 6 C -0.186 4.186 7 C 0.077 3.923 8 O -0.232 6.232 9 C -0.005 4.005 10 C 0.142 3.858 11 H 0.126 0.874 12 O -0.305 6.305 13 C -0.025 4.025 14 C -0.026 4.026 15 H 0.131 0.869 16 N -0.314 5.314 17 C 0.368 3.632 18 O -0.352 6.352 19 C -0.162 4.162 20 C -0.163 4.163 21 C -0.064 4.064 22 C -0.101 4.101 23 C -0.101 4.101 24 C -0.060 4.060 25 C 0.366 3.634 26 O -0.363 6.363 27 C -0.025 4.025 28 O -0.306 6.306 29 C -0.224 4.224 30 C -0.091 4.091 31 H 0.245 0.755 32 H 0.120 0.880 33 H -0.212 1.212 34 H -0.229 1.229 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.096 0.904 41 H 0.170 0.830 42 H 0.193 0.807 43 H 0.195 0.805 44 H 0.175 0.825 45 H 0.095 0.905 46 H 0.129 0.871 47 H 0.175 0.825 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.932 0.638 8.626 9.501 hybrid contribution 0.101 -0.770 -0.375 0.862 sum 4.033 -0.132 8.250 9.184 Atomic orbital electron populations 1.86462 1.17470 1.82234 1.50455 1.25164 0.85133 1.10953 0.96899 0.93782 0.77740 0.75140 0.84811 1.20340 1.02955 0.94952 0.98267 1.20916 0.96759 0.94095 0.96132 1.20604 1.02530 1.00960 0.94507 1.19254 0.94287 0.91826 0.86901 1.86190 1.69059 1.38545 1.29365 1.23157 0.97824 0.92850 0.86696 1.24002 0.81708 0.87201 0.92923 0.87432 1.88237 1.32308 1.62630 1.47296 1.23002 1.00721 0.89817 0.88962 1.22568 0.98528 0.93949 0.87589 0.86860 1.46475 1.52388 1.11162 1.21355 1.18722 0.75518 0.88030 0.80913 1.90789 1.48678 1.19881 1.75859 1.20448 1.04840 0.92748 0.98192 1.20423 1.03903 0.96811 0.95192 1.21160 0.95576 0.95172 0.94461 1.21959 0.93706 1.01274 0.93200 1.21978 0.96455 0.90717 1.00963 1.21173 0.94075 1.00031 0.90730 1.18822 0.77471 0.80794 0.86302 1.90829 1.38151 1.59980 1.47374 1.22994 0.94148 0.93954 0.91428 1.88234 1.66874 1.40620 1.34890 1.21475 1.06489 0.93062 1.01332 1.21035 0.95594 1.00032 0.92467 0.75546 0.87996 1.21167 1.22879 0.84950 0.85550 0.87063 0.87460 0.87015 0.90397 0.83005 0.80662 0.80529 0.82503 0.90461 0.87122 0.82478 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.21 12.83 -148.98 -1.91 -3.12 16 2 C -0.07 -0.09 2.80 71.24 0.20 0.11 16 3 Si 0.78 -1.11 29.80 68.60 2.04 0.93 16 4 C -0.16 -0.39 5.35 -19.85 -0.11 -0.50 16 5 C -0.06 -0.30 9.68 22.25 0.22 -0.08 16 6 C -0.17 -1.14 9.99 22.37 0.22 -0.92 16 7 C 0.12 0.72 6.69 22.51 0.15 0.87 16 8 O -0.32 -2.38 9.92 -72.84 -0.72 -3.11 16 9 C 0.07 0.01 4.83 71.98 0.35 0.35 16 10 C 0.24 0.60 3.59 71.98 0.26 0.86 16 11 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 12 O -0.39 -2.32 10.43 -121.89 -1.27 -3.59 16 13 C 0.05 0.19 6.32 72.07 0.46 0.64 16 14 C 0.08 0.36 3.08 45.16 0.14 0.50 16 15 H 0.11 0.88 7.59 -2.39 -0.02 0.86 16 16 N -0.57 -2.39 2.53 -739.57 -1.87 -4.27 16 17 C 0.58 1.97 7.35 86.81 0.64 2.61 16 18 O -0.48 -2.99 15.16 -3.56 -0.05 -3.05 16 19 C -0.16 0.05 6.40 -20.00 -0.13 -0.08 16 20 C -0.16 -0.11 6.40 -20.00 -0.13 -0.23 16 21 C -0.05 0.21 10.09 22.44 0.23 0.44 16 22 C -0.08 0.84 10.04 22.36 0.22 1.07 16 23 C -0.08 0.88 10.04 22.36 0.22 1.11 16 24 C -0.04 0.25 10.09 22.44 0.23 0.48 16 25 C 0.57 3.37 8.02 86.82 0.70 4.06 16 26 O -0.49 -5.79 17.44 -3.56 -0.06 -5.85 16 27 C 0.05 0.20 6.33 72.07 0.46 0.65 16 28 O -0.39 -2.45 10.43 -121.89 -1.27 -3.72 16 29 C -0.21 -0.13 9.04 22.37 0.20 0.07 16 30 C -0.07 0.02 8.66 22.26 0.19 0.22 16 31 H 0.39 -2.36 8.70 -74.06 -0.64 -3.01 16 32 H 0.10 0.29 7.96 -2.39 -0.02 0.27 16 33 H -0.28 -0.86 7.11 99.48 0.71 -0.15 16 34 H -0.30 -1.86 7.11 99.48 0.71 -1.15 16 35 H 0.13 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.13 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.11 -0.51 7.65 -2.39 -0.02 -0.53 16 38 H 0.11 -0.43 7.67 -2.38 -0.02 -0.45 16 39 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.08 0.22 6.65 -2.38 -0.02 0.21 16 41 H 0.15 -1.02 8.06 -2.91 -0.02 -1.05 16 42 H 0.18 -2.82 8.06 -2.91 -0.02 -2.85 16 43 H 0.18 -2.96 8.06 -2.91 -0.02 -2.99 16 44 H 0.16 -1.41 8.06 -2.91 -0.02 -1.43 16 45 H 0.08 0.24 6.70 -2.39 -0.02 0.22 16 46 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 47 H 0.16 -0.85 6.30 -2.91 -0.02 -0.87 16 48 H 0.15 -0.89 4.90 -2.91 -0.01 -0.90 16 Total: 0.00 -25.80 404.44 0.02 -25.77 By element: Atomic # 1 Polarization: -12.67 SS G_CDS: 0.43 Total: -12.24 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 4.71 Total: 12.23 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: -1.87 Total: -4.27 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -5.29 Total: -22.43 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: 2.04 Total: 0.93 kcal Total: -25.80 0.02 -25.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_13594088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.260 kcal (2) G-P(sol) polarization free energy of solvation -25.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds