Wall clock time and date at job start Mon Mar 8 2021 14:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46813 * 2 1 4 4 C 1.53002 * 109.46951 * 240.00634 * 2 1 3 5 5 O 1.45197 * 109.47517 * 119.99899 * 2 1 3 6 6 C 1.34638 * 116.99740 * 60.00353 * 5 2 1 7 7 O 1.21519 * 120.00146 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00071 * 179.97438 * 6 5 2 9 9 C 1.46505 * 120.00053 * 180.02562 * 8 6 5 10 10 H 1.08988 * 112.85034 * 23.80080 * 9 8 6 11 11 C 1.53782 * 113.61168 * 154.99989 * 9 8 6 12 12 C 1.53781 * 87.08237 * 89.11335 * 11 9 8 13 13 H 1.08996 * 113.61350 * 270.79750 * 12 11 9 14 14 C 1.53003 * 113.61396 * 139.97858 * 12 11 9 15 15 O 1.42905 * 109.47168 * 174.99993 * 14 12 11 16 16 C 1.35895 * 117.00022 * 179.97438 * 15 14 12 17 17 C 1.38737 * 120.05312 * 179.97438 * 16 15 14 18 18 C 1.38141 * 119.94079 * 179.97438 * 17 16 15 19 19 C 1.38269 * 120.05690 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.94114 * 180.02562 * 19 18 17 21 21 O 1.42895 * 109.47147 * 299.99949 * 20 19 18 22 22 Si 1.86299 * 109.46748 * 180.02562 * 20 19 18 23 23 C 1.38263 * 120.11156 * 0.27879 * 19 18 17 24 24 C 1.38143 * 120.05579 * 359.44512 * 23 19 18 25 25 C 1.53780 * 87.08199 * 25.42826 * 12 11 9 26 26 H 1.08996 * 109.46772 * 299.99335 * 1 2 3 27 27 H 1.08992 * 109.47677 * 60.00141 * 1 2 3 28 28 H 1.09005 * 109.46462 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47319 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47386 * 300.00621 * 3 2 1 31 31 H 1.09002 * 109.47479 * 60.00347 * 3 2 1 32 32 H 1.09005 * 109.46924 * 299.98966 * 4 2 1 33 33 H 1.09000 * 109.47609 * 59.99451 * 4 2 1 34 34 H 1.09003 * 109.47184 * 179.97438 * 4 2 1 35 35 H 0.96998 * 119.99880 * 359.97438 * 8 6 5 36 36 H 1.08997 * 113.62181 * 334.56220 * 11 9 8 37 37 H 1.08999 * 113.68841 * 203.67026 * 11 9 8 38 38 H 1.08997 * 109.47562 * 54.99777 * 14 12 11 39 39 H 1.08999 * 109.47085 * 294.99760 * 14 12 11 40 40 H 1.07994 * 120.02884 * 359.96129 * 17 16 15 41 41 H 1.07997 * 119.97174 * 180.02562 * 18 17 16 42 42 H 1.09001 * 109.46740 * 60.00348 * 20 19 18 43 43 H 0.96695 * 114.00385 * 300.00674 * 21 20 19 44 44 H 1.48493 * 110.00250 * 58.67997 * 22 20 19 45 45 H 1.48504 * 109.99999 * 180.02562 * 22 20 19 46 46 H 1.08001 * 119.97275 * 179.72293 * 23 19 18 47 47 H 1.07992 * 120.02923 * 180.27343 * 24 23 19 48 48 H 1.09007 * 113.61349 * 89.11520 * 25 12 11 49 49 H 1.08999 * 113.61903 * 220.01535 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0683 -2.6657 2.4165 9 6 1.6752 -4.0672 2.5824 10 1 1.4228 -4.5506 1.6387 11 6 2.6490 -4.8815 3.4505 12 6 1.8084 -4.4467 4.6626 13 1 2.1382 -3.5085 5.1087 14 6 1.6034 -5.5562 5.6960 15 8 0.9151 -5.0282 6.8317 16 6 0.6516 -5.8899 7.8489 17 6 -0.0130 -5.4444 8.9823 18 6 -0.2802 -6.3224 10.0148 19 6 0.1138 -7.6443 9.9191 20 6 -0.1795 -8.6001 11.0468 21 8 0.4531 -8.1361 12.2411 22 14 0.4748 -10.2900 10.6144 23 6 0.7810 -8.0895 8.7929 24 6 1.0455 -7.2168 7.7552 25 6 0.6294 -4.2868 3.6883 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6768 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2496 35 1 2.6285 -2.2370 3.0823 36 1 3.6640 -4.4844 3.4580 37 1 2.6155 -5.9538 3.2580 38 1 2.5723 -5.9463 6.0074 39 1 1.0132 -6.3593 5.2546 40 1 -0.3211 -4.4120 9.0574 41 1 -0.7979 -5.9762 10.8971 42 1 -1.2566 -8.6565 11.2044 43 1 1.4148 -8.0613 12.1733 44 1 1.9372 -10.2202 10.3662 45 1 0.1914 -11.2421 11.7183 46 1 1.0916 -9.1215 8.7224 47 1 1.5627 -7.5661 6.8739 48 1 0.0426 -5.1964 3.5599 49 1 0.0139 -3.4096 3.8877 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26799_15734082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:41:17 Heat of formation + Delta-G solvation = -98.396966 kcal Electronic energy + Delta-G solvation = -28453.003131 eV Core-core repulsion = 24348.104266 eV Total energy + Delta-G solvation = -4104.898865 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90843 -41.33712 -40.42975 -39.05349 -37.79068 -37.17501 -35.26489 -34.09973 -32.30662 -31.70144 -29.52547 -28.32345 -28.28290 -26.93157 -26.27149 -24.97935 -23.82808 -22.95445 -22.20564 -21.09237 -20.42363 -19.31015 -19.19246 -18.34880 -17.58064 -17.25664 -17.03637 -16.99272 -16.59745 -16.44811 -16.15221 -15.89062 -15.56106 -15.35662 -15.14502 -15.07031 -14.64925 -14.40362 -14.32517 -14.15519 -13.77119 -13.56960 -13.47083 -13.39918 -13.29352 -13.04267 -12.84930 -12.82321 -12.44383 -12.33948 -12.23873 -12.17860 -12.09586 -11.97730 -11.77371 -11.57252 -11.34397 -11.29014 -10.97069 -10.58474 -10.19613 -10.02861 -9.18065 -4.97238 0.30590 0.32186 1.15181 1.29169 1.58308 1.86332 1.95831 2.07541 2.67204 3.08944 3.23770 3.32913 3.38848 3.61443 3.63277 3.71572 3.78081 3.80653 3.83792 3.87786 3.97597 4.09055 4.16397 4.24778 4.30246 4.44844 4.48170 4.53019 4.53308 4.55323 4.57112 4.63583 4.68526 4.75019 4.78700 4.85942 4.88663 4.91755 4.93640 4.96288 4.99077 5.09596 5.18749 5.28868 5.33907 5.37077 5.48516 5.50571 5.60737 5.72888 6.38092 6.39674 6.41454 7.41876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.653 3.347 7 O -0.564 6.564 8 N -0.695 5.695 9 C 0.138 3.862 10 H 0.111 0.889 11 C -0.136 4.136 12 C -0.111 4.111 13 H 0.103 0.897 14 C 0.068 3.932 15 O -0.311 6.311 16 C 0.137 3.863 17 C -0.152 4.152 18 C -0.052 4.052 19 C -0.158 4.158 20 C -0.069 4.069 21 O -0.531 6.531 22 Si 0.681 3.319 23 C -0.075 4.075 24 C -0.206 4.206 25 C -0.146 4.146 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.375 0.625 44 H -0.261 1.261 45 H -0.257 1.257 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.097 0.903 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -0.457 -1.993 2.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.407 3.593 7 O -0.453 6.453 8 N -0.354 5.354 9 C 0.033 3.967 10 H 0.129 0.871 11 C -0.174 4.174 12 C -0.130 4.130 13 H 0.121 0.879 14 C -0.007 4.007 15 O -0.225 6.225 16 C 0.092 3.908 17 C -0.171 4.171 18 C -0.070 4.070 19 C -0.158 4.158 20 C -0.179 4.179 21 O -0.337 6.337 22 Si 0.583 3.417 23 C -0.093 4.093 24 C -0.224 4.224 25 C -0.184 4.184 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.135 0.865 43 H 0.223 0.777 44 H -0.186 1.186 45 H -0.182 1.182 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.115 0.885 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.200 -1.074 -2.081 2.631 hybrid contribution 1.119 0.784 0.815 1.591 sum 2.318 -0.290 -1.265 2.657 Atomic orbital electron populations 1.22523 0.93806 1.05074 1.02734 1.22128 0.94479 0.91556 0.81818 1.21880 1.02330 0.92341 1.03361 1.22525 1.01601 1.03452 0.96544 1.86307 1.71486 1.23350 1.46783 1.18060 0.78647 0.80660 0.81969 1.90922 1.40753 1.70377 1.43235 1.44354 1.55441 1.11802 1.23791 1.21749 0.95717 0.79529 0.99689 0.87071 1.23367 0.98849 1.01357 0.93792 1.22669 0.98060 0.99181 0.93074 0.87896 1.22889 0.96300 0.96754 0.84784 1.86095 1.73048 1.37131 1.26206 1.19057 0.94667 0.88760 0.88334 1.20522 1.02907 1.01148 0.92473 1.20843 0.96663 0.92022 0.97494 1.20174 1.03047 0.95822 0.96805 1.24945 1.02642 1.05252 0.85094 1.86592 1.24807 1.87604 1.34718 0.95094 0.82562 0.76566 0.87501 1.20794 0.96744 0.98901 0.92843 1.21189 1.06925 0.93005 1.01309 1.23562 0.96602 1.03506 0.94763 0.92112 0.90906 0.89409 0.91394 0.89908 0.91383 0.89422 0.90907 0.92118 0.75810 0.89915 0.87832 0.91645 0.91402 0.84930 0.84931 0.86477 0.77699 1.18626 1.18238 0.85387 0.85094 0.88500 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.25 8.37 37.16 0.31 0.06 16 2 C 0.14 0.18 1.13 -90.62 -0.10 0.07 16 3 C -0.14 0.10 8.85 37.16 0.33 0.43 16 4 C -0.18 -0.22 8.37 37.16 0.31 0.09 16 5 O -0.36 -0.86 9.94 -40.32 -0.40 -1.26 16 6 C 0.65 1.72 8.06 54.05 0.44 2.15 16 7 O -0.56 -2.78 11.48 -19.29 -0.22 -3.00 16 8 N -0.70 0.24 5.27 -57.93 -0.31 -0.06 16 9 C 0.14 -0.20 4.33 -67.11 -0.29 -0.49 16 10 H 0.11 -0.02 7.46 -51.94 -0.39 -0.40 16 11 C -0.14 0.49 7.39 -25.92 -0.19 0.30 16 12 C -0.11 0.29 3.89 -89.81 -0.35 -0.06 16 13 H 0.10 -0.23 8.14 -51.93 -0.42 -0.66 16 14 C 0.07 -0.13 4.58 37.16 0.17 0.04 16 15 O -0.31 -0.30 10.14 -19.41 -0.20 -0.50 16 16 C 0.14 0.16 6.69 -39.21 -0.26 -0.10 16 17 C -0.15 -0.18 9.99 -39.43 -0.39 -0.57 16 18 C -0.05 -0.04 9.60 -39.61 -0.38 -0.42 16 19 C -0.16 -0.05 5.39 -104.60 -0.56 -0.61 16 20 C -0.07 0.01 2.82 36.01 0.10 0.11 16 21 O -0.53 -0.73 12.76 -35.23 -0.45 -1.18 16 22 Si 0.68 -0.60 29.78 -169.99 -5.06 -5.66 16 23 C -0.08 0.02 8.66 -39.61 -0.34 -0.32 16 24 C -0.21 0.02 9.04 -39.43 -0.36 -0.34 16 25 C -0.15 0.24 7.43 -25.92 -0.19 0.05 16 26 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.09 0.30 5.88 -51.93 -0.31 0.00 16 29 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 31 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.09 0.29 5.88 -51.93 -0.31 -0.02 16 33 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 34 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 35 H 0.41 -0.89 8.81 -40.82 -0.36 -1.25 16 36 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 37 H 0.10 -0.49 8.10 -51.93 -0.42 -0.91 16 38 H 0.07 -0.18 7.67 -51.93 -0.40 -0.58 16 39 H 0.07 -0.20 7.36 -51.93 -0.38 -0.58 16 40 H 0.13 0.04 8.06 -52.49 -0.42 -0.38 16 41 H 0.13 0.00 8.06 -52.49 -0.42 -0.42 16 42 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 43 H 0.38 -0.51 8.70 45.56 0.40 -0.12 16 44 H -0.26 -0.27 7.10 56.52 0.40 0.13 16 45 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 46 H 0.13 -0.27 4.87 -52.49 -0.26 -0.53 16 47 H 0.13 -0.28 6.30 -52.49 -0.33 -0.61 16 48 H 0.10 -0.22 7.90 -51.93 -0.41 -0.63 16 49 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 LS Contribution 392.59 15.07 5.92 5.92 Total: 0.00 -7.01 392.59 -10.33 -17.34 By element: Atomic # 1 Polarization: -4.15 SS G_CDS: -7.84 Total: -11.99 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.77 Total: 0.39 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -0.31 Total: -0.06 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -1.27 Total: -5.93 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: -5.06 Total: -5.66 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -7.01 -10.33 -17.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_15734082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.054 kcal (2) G-P(sol) polarization free energy of solvation -7.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds