Wall clock time and date at job start Mon Mar 8 2021 14:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47197 * 2 1 4 4 C 1.52996 * 109.46941 * 239.99619 * 2 1 3 5 5 O 1.45200 * 109.46958 * 119.99890 * 2 1 3 6 6 C 1.34638 * 116.99938 * 59.99470 * 5 2 1 7 7 O 1.21514 * 120.00036 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00091 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00015 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.90889 * 336.25053 * 9 8 6 11 11 C 1.53784 * 113.61524 * 107.50411 * 9 8 6 12 12 C 1.53778 * 87.08081 * 139.98080 * 11 9 8 13 13 H 1.09004 * 113.61886 * 89.12045 * 12 11 9 14 14 C 1.53003 * 113.68969 * 220.00869 * 12 11 9 15 15 O 1.42899 * 109.46895 * 272.53319 * 14 12 11 16 16 C 1.35903 * 116.99518 * 179.97438 * 15 14 12 17 17 C 1.38724 * 120.06031 * 359.72975 * 16 15 14 18 18 C 1.38145 * 119.94738 * 179.74434 * 17 16 15 19 19 C 1.38271 * 120.05437 * 0.50657 * 18 17 16 20 20 C 1.50699 * 119.94287 * 179.74933 * 19 18 17 21 21 O 1.42907 * 109.46587 * 245.01756 * 20 19 18 22 22 Si 1.86294 * 109.47554 * 5.02112 * 20 19 18 23 23 C 1.38267 * 120.10936 * 359.76584 * 19 18 17 24 24 C 1.38149 * 120.05431 * 359.97438 * 23 19 18 25 25 C 1.53778 * 87.08449 * 334.56700 * 12 11 9 26 26 H 1.09002 * 109.46797 * 300.00573 * 1 2 3 27 27 H 1.09003 * 109.46912 * 59.99660 * 1 2 3 28 28 H 1.08997 * 109.47508 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46812 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47350 * 299.99503 * 3 2 1 31 31 H 1.08999 * 109.47271 * 59.99743 * 3 2 1 32 32 H 1.08997 * 109.47510 * 300.00599 * 4 2 1 33 33 H 1.09003 * 109.46886 * 60.00078 * 4 2 1 34 34 H 1.08997 * 109.47474 * 179.97438 * 4 2 1 35 35 H 0.96998 * 119.99607 * 0.02562 * 8 6 5 36 36 H 1.08993 * 113.61313 * 254.52676 * 11 9 8 37 37 H 1.09000 * 113.61578 * 25.43408 * 11 9 8 38 38 H 1.08994 * 109.47311 * 32.53706 * 14 12 11 39 39 H 1.08999 * 109.47124 * 152.53650 * 14 12 11 40 40 H 1.08000 * 120.03005 * 359.97438 * 17 16 15 41 41 H 1.08000 * 119.97773 * 180.27657 * 18 17 16 42 42 H 1.09001 * 109.46770 * 125.02639 * 20 19 18 43 43 H 0.96700 * 113.99720 * 180.02562 * 21 20 19 44 44 H 1.48510 * 109.99781 * 300.00394 * 22 20 19 45 45 H 1.48502 * 110.00080 * 61.31863 * 22 20 19 46 46 H 1.07993 * 119.97004 * 179.97438 * 23 19 18 47 47 H 1.08002 * 120.02496 * 179.97438 * 24 23 19 48 48 H 1.08998 * 113.61879 * 270.88747 * 25 12 11 49 49 H 1.08999 * 113.61887 * 139.97854 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5096 0.5037 8 7 2.0679 -2.6657 2.4167 9 6 1.6746 -4.0671 2.5827 10 1 0.7607 -4.3179 2.0442 11 6 2.8230 -5.0616 2.3441 12 6 2.2748 -5.8600 3.5386 13 1 1.5251 -6.6012 3.2614 14 6 3.3644 -6.4293 4.4495 15 8 3.7749 -7.7074 3.9598 16 6 4.7442 -8.3539 4.6594 17 6 5.2929 -7.7677 5.7907 18 6 6.2743 -8.4292 6.5032 19 6 6.7172 -9.6701 6.0836 20 6 7.7919 -10.3870 6.8596 21 8 8.9628 -10.5095 6.0495 22 14 8.1992 -9.4176 8.3974 23 6 6.1760 -10.2540 4.9532 24 6 5.1905 -9.5988 4.2404 25 6 1.6758 -4.5380 4.0467 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7210 -1.2495 35 1 2.6275 -2.2368 3.0829 36 1 2.7511 -5.5919 1.3946 37 1 3.8116 -4.6373 2.5193 38 1 4.2189 -5.7528 4.4605 39 1 2.9729 -6.5365 5.4611 40 1 4.9505 -6.7966 6.1164 41 1 6.6986 -7.9753 7.3865 42 1 7.4378 -11.3794 7.1387 43 1 9.6973 -10.9625 6.4859 44 1 8.6832 -8.0625 8.0303 45 1 6.9976 -9.3104 9.2634 46 1 6.5239 -11.2230 4.6273 47 1 4.7684 -10.0552 3.3572 48 1 2.3507 -3.9704 4.6873 49 1 0.6778 -4.6455 4.4716 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26799_15734236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:41:20 Heat of formation + Delta-G solvation = -98.443593 kcal Electronic energy + Delta-G solvation = -28399.746655 eV Core-core repulsion = 24294.845768 eV Total energy + Delta-G solvation = -4104.900887 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84548 -41.33445 -40.36038 -38.94016 -37.80381 -37.16005 -35.30331 -34.22576 -32.35942 -31.79711 -29.51119 -28.32211 -28.27874 -26.93234 -26.20630 -25.05510 -23.80653 -22.50981 -21.93870 -21.40167 -20.59694 -19.32781 -18.98369 -18.40750 -17.93369 -17.29052 -17.11277 -17.00729 -16.70860 -16.48699 -16.24393 -15.69228 -15.52786 -15.37254 -15.29773 -14.68426 -14.46796 -14.37537 -14.24775 -13.89146 -13.72432 -13.65717 -13.44479 -13.39542 -13.11731 -13.04415 -12.83209 -12.81756 -12.63505 -12.45215 -12.32047 -12.20307 -12.10856 -11.93828 -11.90117 -11.74069 -11.41523 -11.28720 -10.94991 -10.31453 -10.15799 -10.03759 -9.17475 -4.99579 0.28419 0.31881 1.19938 1.27113 1.61319 1.87792 1.94559 2.07333 2.63602 3.12143 3.24845 3.33350 3.41837 3.61594 3.62715 3.69921 3.78581 3.79496 3.84145 3.93877 3.98032 4.08443 4.10416 4.19480 4.25939 4.37480 4.44401 4.47527 4.53283 4.56162 4.57164 4.63688 4.67375 4.74395 4.78804 4.80653 4.88119 4.91678 4.93476 4.94056 5.06121 5.10430 5.18263 5.26419 5.33967 5.37476 5.48692 5.50481 5.60952 5.70877 6.36734 6.41894 6.62470 7.43261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.566 6.566 8 N -0.702 5.702 9 C 0.141 3.859 10 H 0.123 0.877 11 C -0.147 4.147 12 C -0.107 4.107 13 H 0.110 0.890 14 C 0.070 3.930 15 O -0.309 6.309 16 C 0.137 3.863 17 C -0.204 4.204 18 C -0.082 4.082 19 C -0.115 4.115 20 C -0.066 4.066 21 O -0.546 6.546 22 Si 0.681 3.319 23 C -0.049 4.049 24 C -0.149 4.149 25 C -0.136 4.136 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.406 0.594 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.381 0.619 44 H -0.252 1.252 45 H -0.256 1.256 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.092 0.908 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -0.203 4.054 4.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.454 6.454 8 N -0.360 5.360 9 C 0.037 3.963 10 H 0.141 0.859 11 C -0.186 4.186 12 C -0.126 4.126 13 H 0.128 0.872 14 C -0.005 4.005 15 O -0.223 6.223 16 C 0.092 3.908 17 C -0.223 4.223 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.177 4.177 21 O -0.353 6.353 22 Si 0.583 3.417 23 C -0.067 4.067 24 C -0.168 4.168 25 C -0.174 4.174 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.241 0.759 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.229 0.771 44 H -0.177 1.177 45 H -0.181 1.181 46 H 0.153 0.847 47 H 0.154 0.846 48 H 0.110 0.890 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.869 0.611 3.449 3.608 hybrid contribution -0.060 0.284 0.063 0.297 sum 0.808 0.894 3.511 3.712 Atomic orbital electron populations 1.22523 0.93835 1.05044 1.02710 1.22120 0.94451 0.91558 0.81877 1.21878 1.02327 0.92364 1.03334 1.22520 1.01605 1.03466 0.96536 1.86307 1.71490 1.23493 1.46747 1.18170 0.78613 0.80550 0.82274 1.90917 1.40999 1.70509 1.43015 1.44747 1.55359 1.12152 1.23779 1.22513 0.99366 0.77540 0.96853 0.85912 1.23619 0.98951 0.96745 0.99266 1.22343 0.97729 0.96087 0.96392 0.87202 1.22837 0.97087 0.82780 0.97813 1.86093 1.51975 1.32613 1.51592 1.19012 0.88769 0.92254 0.90770 1.21128 1.01619 1.01894 0.97633 1.20673 0.96630 0.93941 0.98727 1.19237 0.98777 0.95376 0.98109 1.24605 0.86820 1.04338 1.01920 1.86504 1.23396 1.82008 1.43357 0.95367 0.86404 0.81468 0.78506 1.20839 0.93457 0.99615 0.92788 1.20533 1.00041 0.93704 1.02513 1.23399 1.02610 0.95207 0.96207 0.92130 0.90917 0.89433 0.91410 0.89912 0.91410 0.89411 0.90923 0.92133 0.75867 0.90085 0.89345 0.91675 0.91541 0.85167 0.86302 0.90893 0.77110 1.17674 1.18059 0.84725 0.84608 0.88984 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.29 8.37 37.16 0.31 0.02 16 2 C 0.14 0.22 1.13 -90.62 -0.10 0.12 16 3 C -0.14 0.06 8.85 37.16 0.33 0.39 16 4 C -0.18 -0.32 8.37 37.16 0.31 0.00 16 5 O -0.37 -0.99 9.94 -40.32 -0.40 -1.39 16 6 C 0.65 1.98 8.06 54.05 0.44 2.42 16 7 O -0.57 -3.05 11.48 -19.28 -0.22 -3.27 16 8 N -0.70 0.00 5.36 -57.93 -0.31 -0.31 16 9 C 0.14 -0.12 4.24 -67.12 -0.28 -0.40 16 10 H 0.12 0.06 7.47 -51.93 -0.39 -0.33 16 11 C -0.15 0.13 7.43 -25.92 -0.19 -0.07 16 12 C -0.11 0.19 4.01 -89.81 -0.36 -0.17 16 13 H 0.11 -0.16 8.14 -51.93 -0.42 -0.58 16 14 C 0.07 -0.06 4.58 37.16 0.17 0.11 16 15 O -0.31 -0.65 10.14 -19.44 -0.20 -0.84 16 16 C 0.14 0.37 6.69 -39.22 -0.26 0.11 16 17 C -0.20 -0.44 9.04 -39.44 -0.36 -0.79 16 18 C -0.08 -0.23 8.66 -39.60 -0.34 -0.57 16 19 C -0.11 -0.30 5.38 -104.60 -0.56 -0.87 16 20 C -0.07 -0.02 2.79 36.01 0.10 0.08 16 21 O -0.55 -0.27 12.81 -35.23 -0.45 -0.72 16 22 Si 0.68 -0.57 29.85 -169.99 -5.07 -5.65 16 23 C -0.05 -0.11 9.68 -39.60 -0.38 -0.49 16 24 C -0.15 -0.36 9.99 -39.43 -0.39 -0.76 16 25 C -0.14 0.40 7.39 -25.92 -0.19 0.20 16 26 H 0.06 0.08 8.14 -51.93 -0.42 -0.35 16 27 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.09 0.32 5.88 -51.93 -0.31 0.02 16 29 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 30 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 31 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.09 0.34 5.88 -51.93 -0.31 0.03 16 33 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.41 -0.85 8.84 -40.82 -0.36 -1.21 16 36 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.09 -0.09 7.90 -51.93 -0.41 -0.50 16 38 H 0.07 -0.10 7.36 -51.93 -0.38 -0.48 16 39 H 0.07 -0.12 7.68 -51.93 -0.40 -0.51 16 40 H 0.13 0.00 6.30 -52.49 -0.33 -0.33 16 41 H 0.12 0.24 4.86 -52.49 -0.26 -0.01 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 43 H 0.38 -1.75 8.74 45.56 0.40 -1.35 16 44 H -0.25 -0.58 7.05 56.52 0.40 -0.18 16 45 H -0.26 -0.40 7.11 56.52 0.40 0.00 16 46 H 0.13 0.09 8.06 -52.49 -0.42 -0.33 16 47 H 0.14 0.15 8.06 -52.49 -0.42 -0.28 16 48 H 0.09 -0.37 8.08 -51.93 -0.42 -0.79 16 49 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 LS Contribution 392.86 15.07 5.92 5.92 Total: 0.00 -8.02 392.86 -10.35 -18.37 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: -7.84 Total: -11.44 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.78 Total: -0.67 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -0.31 Total: -0.31 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -1.27 Total: -6.23 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.07 Total: -5.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -8.02 -10.35 -18.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26799_15734236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.072 kcal (2) G-P(sol) polarization free energy of solvation -8.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds