Wall clock time and date at job start Mon Mar 8 2021 14:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47260 * 2 1 4 4 C 1.52995 * 109.47352 * 239.99739 * 2 1 3 5 5 Si 1.86301 * 109.46997 * 119.99756 * 2 1 3 6 6 C 1.86300 * 109.47196 * 299.99888 * 5 2 1 7 7 C 1.86305 * 109.47158 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47306 * 59.99857 * 5 2 1 9 9 C 1.42902 * 114.00187 * 180.02562 * 8 5 2 10 10 C 1.52991 * 109.46868 * 180.02562 * 9 8 5 11 11 O 1.42903 * 109.47422 * 65.00292 * 10 9 8 12 12 C 1.35897 * 117.00214 * 179.97438 * 11 10 9 13 13 C 1.38709 * 120.05637 * 359.95484 * 12 11 10 14 14 C 1.38172 * 119.94642 * 179.97438 * 13 12 11 15 15 C 1.38245 * 120.05216 * 0.02562 * 14 13 12 16 16 C 1.38287 * 120.11339 * 0.02562 * 15 14 13 17 17 C 1.38125 * 120.05453 * 359.95334 * 16 15 14 18 18 C 1.50699 * 120.02390 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.47124 * 105.00291 * 18 17 16 20 20 Si 1.86302 * 109.47415 * 344.99961 * 18 17 16 21 21 H 1.48499 * 109.47007 * 59.99977 * 20 18 17 22 22 H 1.48500 * 109.46966 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46711 * 300.00285 * 20 18 17 24 24 H 1.09005 * 109.47288 * 300.00619 * 1 2 3 25 25 H 1.08999 * 109.47179 * 60.00434 * 1 2 3 26 26 H 1.08996 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46670 * 299.99878 * 3 2 1 29 29 H 1.08996 * 109.46937 * 59.99469 * 3 2 1 30 30 H 1.09009 * 109.47219 * 300.00294 * 4 2 1 31 31 H 1.08999 * 109.47119 * 59.99791 * 4 2 1 32 32 H 1.09000 * 109.47744 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47259 * 180.02562 * 6 5 2 34 34 H 1.08996 * 109.47073 * 299.99967 * 6 5 2 35 35 H 1.08997 * 109.46959 * 60.00018 * 6 5 2 36 36 H 1.08996 * 109.46750 * 300.00024 * 7 5 2 37 37 H 1.08997 * 109.46835 * 59.99618 * 7 5 2 38 38 H 1.09003 * 109.46953 * 180.02562 * 7 5 2 39 39 H 1.08995 * 109.46671 * 59.99978 * 9 8 5 40 40 H 1.09000 * 109.46758 * 299.99792 * 9 8 5 41 41 H 1.08997 * 109.47699 * 305.00031 * 10 9 8 42 42 H 1.09008 * 109.46959 * 184.99831 * 10 9 8 43 43 H 1.08002 * 120.02844 * 0.04164 * 13 12 11 44 44 H 1.08002 * 119.97211 * 180.29545 * 14 13 12 45 45 H 1.07997 * 119.93859 * 179.97438 * 15 14 13 46 46 H 1.07998 * 119.97069 * 179.97438 * 16 15 14 47 47 H 1.09005 * 109.46839 * 225.00112 * 18 17 16 48 48 H 0.96704 * 114.00130 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8775 1.5216 8 8 1.6073 -2.4159 1.5213 9 6 2.0284 -3.1813 2.6522 10 6 1.4636 -4.5992 2.5473 11 8 2.0330 -5.2561 1.4130 12 6 1.6345 -6.5334 1.1754 13 6 0.7152 -7.1423 2.0169 14 6 0.3112 -8.4409 1.7728 15 6 0.8228 -9.1334 0.6912 16 6 1.7402 -8.5290 -0.1486 17 6 2.1469 -7.2308 0.0909 18 6 3.1463 -6.5726 -0.8251 19 8 2.4747 -5.6322 -1.6657 20 14 3.9711 -7.8690 -1.8786 21 1 2.9458 -8.5738 -2.6894 22 1 4.9563 -7.2203 -2.7808 23 1 4.6690 -8.8462 -1.0050 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.8937 -0.5134 3.9323 34 1 1.8933 1.0277 3.0422 35 1 0.4400 0.0001 3.0423 36 1 4.3777 -1.3911 0.6317 37 1 4.3769 0.1503 1.5218 38 1 4.3773 -1.3917 2.4114 39 1 1.6636 -2.7110 3.5653 40 1 3.1173 -3.2251 2.6761 41 1 0.3806 -4.5515 2.4337 42 1 1.7100 -5.1563 3.4513 43 1 0.3147 -6.6015 2.8616 44 1 -0.4082 -8.9138 2.4250 45 1 0.5061 -10.1485 0.5024 46 1 2.1388 -9.0722 -0.9927 47 1 3.8989 -6.0553 -0.2300 48 1 3.0581 -5.1693 -2.2826 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26800_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:27:43 Heat of formation + Delta-G solvation = -138.932151 kcal Electronic energy + Delta-G solvation = -25062.066207 eV Core-core repulsion = 21626.838504 eV Total energy + Delta-G solvation = -3435.227703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25876 -38.91019 -37.56455 -37.37715 -36.81233 -32.84882 -31.47226 -30.13166 -29.29496 -29.04988 -27.82636 -27.37021 -26.58757 -24.68514 -22.68732 -22.15010 -20.40051 -19.23171 -18.44773 -17.99357 -17.30960 -16.90524 -16.38785 -16.17449 -15.79218 -15.74652 -15.30204 -15.11039 -14.98361 -14.83692 -14.71431 -14.28467 -14.00342 -13.84614 -13.58603 -13.49816 -13.35042 -13.16577 -13.02333 -12.94738 -12.91444 -12.67629 -12.62344 -12.39347 -12.16182 -11.98140 -11.79121 -11.73566 -11.71728 -11.63592 -11.47090 -11.21579 -10.29534 -10.21521 -10.03743 -9.94018 -9.12338 0.24729 0.46603 1.16726 1.44803 1.49673 1.55648 1.80126 1.88431 2.15262 2.26552 2.49739 2.70498 3.56952 3.83739 3.86684 4.04619 4.11587 4.13627 4.14678 4.19077 4.25686 4.30908 4.37533 4.43266 4.48364 4.54787 4.64627 4.74190 4.76790 4.79477 4.80411 4.80973 4.83408 4.83867 5.00885 5.01007 5.10071 5.10272 5.21241 5.34022 5.35025 5.39522 5.41521 5.44922 5.51994 5.53181 5.60715 5.65405 5.82260 6.48700 6.86023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.384 4.384 3 C -0.140 4.140 4 C -0.134 4.134 5 Si 1.313 2.687 6 C -0.515 4.515 7 C -0.516 4.516 8 O -0.638 6.638 9 C 0.077 3.923 10 C 0.046 3.954 11 O -0.311 6.311 12 C 0.138 3.862 13 C -0.218 4.218 14 C -0.078 4.078 15 C -0.162 4.162 16 C -0.100 4.100 17 C -0.136 4.136 18 C -0.075 4.075 19 O -0.559 6.559 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.255 1.255 23 H -0.256 1.256 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.134 0.866 47 H 0.076 0.924 48 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 0.049 3.751 3.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.426 4.426 3 C -0.197 4.197 4 C -0.191 4.191 5 Si 1.443 2.557 6 C -0.617 4.617 7 C -0.618 4.618 8 O -0.597 6.597 9 C 0.002 3.998 10 C -0.029 4.029 11 O -0.225 6.225 12 C 0.092 3.908 13 C -0.237 4.237 14 C -0.096 4.096 15 C -0.180 4.180 16 C -0.118 4.118 17 C -0.137 4.137 18 C -0.185 4.185 19 O -0.367 6.367 20 Si 0.804 3.196 21 H -0.187 1.187 22 H -0.179 1.179 23 H -0.180 1.180 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.166 0.834 44 H 0.169 0.831 45 H 0.164 0.836 46 H 0.152 0.848 47 H 0.094 0.906 48 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.002 -0.832 3.322 3.568 hybrid contribution 0.211 1.003 -0.033 1.025 sum 1.213 0.171 3.289 3.509 Atomic orbital electron populations 1.21523 0.94417 1.01479 1.01839 1.25939 1.00275 1.03069 1.13324 1.21599 1.01252 0.94620 1.02225 1.21500 1.00906 0.99829 0.96869 0.76254 0.62494 0.52718 0.64231 1.27053 1.06912 1.09854 1.17900 1.27089 1.25404 1.04862 1.04440 1.85419 1.79390 1.46718 1.48193 1.22336 0.99835 0.89459 0.88178 1.23281 0.99168 0.92550 0.87911 1.86153 1.64791 1.23435 1.48077 1.19005 0.93598 0.84192 0.94006 1.21585 1.01757 0.97837 1.02512 1.21352 0.98023 0.93398 0.96806 1.21318 0.98865 1.01686 0.96159 1.21154 0.97358 0.93706 0.99571 1.18924 1.03231 0.94766 0.96774 1.24697 0.97488 0.99668 0.96603 1.86508 1.38913 1.57726 1.53559 0.85311 0.77985 0.77544 0.78749 1.18667 1.17897 1.17983 0.91873 0.93463 0.93006 0.91826 0.93230 0.91658 0.92980 0.93488 0.92150 0.90571 0.90340 0.91057 0.91534 0.90383 0.90967 0.87862 0.90896 0.90978 0.88546 0.83372 0.83141 0.83558 0.84826 0.90636 0.76009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.28 7.85 71.98 0.56 0.28 16 2 C -0.38 -0.35 0.53 -10.79 -0.01 -0.36 16 3 C -0.14 0.07 7.85 71.98 0.56 0.64 16 4 C -0.13 -0.36 7.85 71.98 0.56 0.20 16 5 Si 1.31 -2.22 8.45 68.60 0.58 -1.64 16 6 C -0.52 1.44 8.50 113.37 0.96 2.41 16 7 C -0.52 0.63 8.50 113.37 0.96 1.59 16 8 O -0.64 -1.37 8.52 -144.34 -1.23 -2.60 16 9 C 0.08 -0.17 5.51 71.98 0.40 0.23 16 10 C 0.05 -0.01 5.12 71.98 0.37 0.36 16 11 O -0.31 -2.17 9.44 -87.75 -0.83 -3.00 16 12 C 0.14 1.03 6.66 22.51 0.15 1.18 16 13 C -0.22 -0.70 9.04 22.37 0.20 -0.50 16 14 C -0.08 -0.12 10.04 22.26 0.22 0.10 16 15 C -0.16 -0.43 10.04 22.28 0.22 -0.21 16 16 C -0.10 -0.55 8.66 22.25 0.19 -0.36 16 17 C -0.14 -1.06 5.30 -19.77 -0.10 -1.16 16 18 C -0.08 -0.37 2.37 71.24 0.17 -0.20 16 19 O -0.56 -3.62 12.86 -148.98 -1.92 -5.53 16 20 Si 0.98 1.84 25.49 68.60 1.75 3.59 16 21 H -0.26 -1.00 6.73 99.48 0.67 -0.33 16 22 H -0.25 -0.31 7.11 99.48 0.71 0.40 16 23 H -0.26 -0.67 7.11 99.48 0.71 0.03 16 24 H 0.06 -0.01 7.79 -2.38 -0.02 -0.02 16 25 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.05 0.19 7.96 -2.39 -0.02 0.17 16 27 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 28 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 30 H 0.05 0.26 7.97 -2.38 -0.02 0.24 16 31 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.06 0.06 7.79 -2.39 -0.02 0.04 16 33 H 0.08 -0.35 7.48 -2.39 -0.02 -0.37 16 34 H 0.08 -0.26 7.79 -2.39 -0.02 -0.27 16 35 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 36 H 0.07 0.03 7.79 -2.39 -0.02 0.01 16 37 H 0.08 -0.17 7.79 -2.39 -0.02 -0.19 16 38 H 0.07 -0.18 7.48 -2.39 -0.02 -0.19 16 39 H 0.10 -0.84 7.21 -2.39 -0.02 -0.86 16 40 H 0.07 -0.28 7.22 -2.39 -0.02 -0.30 16 41 H 0.07 -0.02 7.66 -2.39 -0.02 -0.04 16 42 H 0.10 -0.53 7.66 -2.38 -0.02 -0.55 16 43 H 0.15 -0.26 6.30 -2.91 -0.02 -0.28 16 44 H 0.15 -0.59 8.06 -2.91 -0.02 -0.61 16 45 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 46 H 0.13 0.39 4.89 -2.91 -0.01 0.37 16 47 H 0.08 0.26 7.83 -2.38 -0.02 0.24 16 48 H 0.39 -0.97 8.74 -74.05 -0.65 -1.62 16 Total: 0.00 -14.46 380.79 4.78 -9.68 By element: Atomic # 1 Polarization: -5.67 SS G_CDS: 0.99 Total: -4.69 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.44 Total: 4.19 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -3.97 Total: -11.13 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: 2.33 Total: 1.95 kcal Total: -14.46 4.78 -9.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.254 kcal (2) G-P(sol) polarization free energy of solvation -14.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds