Wall clock time and date at job start Mon Mar 8 2021 14:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86304 * 109.47462 * 2 1 4 4 C 1.50704 * 109.47027 * 120.00101 * 2 1 3 5 5 C 1.38706 * 120.02570 * 74.99869 * 4 2 1 6 6 O 1.35902 * 120.06137 * 359.97438 * 5 4 2 7 7 C 1.42897 * 117.00165 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47038 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47127 * 179.97438 * 8 7 6 10 10 O 1.42972 * 109.46757 * 299.99849 * 8 7 6 11 11 C 1.43088 * 113.76710 * 178.79913 * 10 8 7 12 12 C 1.53259 * 108.94206 * 302.01995 * 11 10 8 13 13 H 1.09001 * 109.57909 * 294.59404 * 12 11 10 14 14 N 1.46503 * 109.57846 * 174.33398 * 12 11 10 15 15 C 1.34520 * 124.45856 * 119.99970 * 14 12 11 16 16 O 1.21446 * 125.71234 * 359.97322 * 15 14 12 17 17 C 1.47812 * 108.58028 * 180.02562 * 15 14 12 18 18 C 1.40948 * 105.88101 * 0.02562 * 17 15 14 19 19 C 1.38564 * 119.82794 * 179.97438 * 18 17 15 20 20 C 1.38613 * 119.71575 * 0.28235 * 19 18 17 21 21 C 1.38221 * 120.45721 * 359.47768 * 20 19 18 22 22 C 1.38568 * 134.30425 * 180.02562 * 17 15 14 23 23 C 1.34520 * 124.45793 * 300.00903 * 14 12 11 24 24 O 1.21449 * 125.71588 * 359.97438 * 23 14 12 25 25 C 1.53266 * 108.84154 * 54.53097 * 12 11 10 26 26 O 1.42966 * 109.47219 * 59.98992 * 8 7 6 27 27 C 1.38755 * 119.88733 * 180.25307 * 5 4 2 28 28 C 1.38131 * 119.94294 * 359.42855 * 27 5 4 29 29 C 1.38285 * 120.05116 * 0.59444 * 28 27 5 30 30 C 1.38166 * 120.02618 * 254.97689 * 4 2 1 31 31 H 0.96710 * 113.99767 * 59.99957 * 1 2 3 32 32 H 1.09003 * 109.47320 * 239.99868 * 2 1 3 33 33 H 1.48500 * 109.99554 * 59.99856 * 3 2 1 34 34 H 1.48498 * 109.99916 * 181.31600 * 3 2 1 35 35 H 1.08993 * 109.47647 * 60.00035 * 7 6 5 36 36 H 1.09000 * 109.46780 * 299.99183 * 7 6 5 37 37 H 1.09006 * 109.55787 * 182.18587 * 11 10 8 38 38 H 1.08996 * 109.56213 * 61.86176 * 11 10 8 39 39 H 1.08002 * 120.13758 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.76643 * 179.69270 * 20 19 18 41 41 H 1.08001 * 119.76837 * 180.26667 * 21 20 19 42 42 H 1.07995 * 120.14179 * 0.02562 * 22 17 15 43 43 H 1.08996 * 109.55949 * 65.31356 * 25 12 11 44 44 H 1.08996 * 109.55911 * 185.63895 * 25 12 11 45 45 H 1.08000 * 120.02961 * 179.69736 * 27 5 4 46 46 H 1.07999 * 119.96995 * 180.29345 * 28 27 5 47 47 H 1.07999 * 119.94262 * 179.69954 * 29 28 27 48 48 H 1.07998 * 119.97087 * 0.04471 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.8695 -2.0940 1.3069 6 8 1.3557 -2.8107 0.2728 7 6 1.3230 -4.2316 0.4212 8 6 0.7166 -4.8616 -0.8344 9 1 0.6921 -5.9455 -0.7214 10 8 -0.6136 -4.3710 -1.0188 11 6 -1.2602 -4.8830 -2.1880 12 6 -0.4180 -4.5275 -3.4182 13 1 -0.4031 -3.4457 -3.5505 14 7 -0.9948 -5.1596 -4.6073 15 6 -1.4384 -4.4894 -5.6861 16 8 -1.4247 -3.2831 -5.8263 17 6 -1.9462 -5.4668 -6.6718 18 6 -1.7643 -6.7357 -6.0857 19 6 -2.1494 -7.8747 -6.7745 20 6 -2.7059 -7.7579 -8.0386 21 6 -2.8888 -6.5133 -8.6114 22 6 -2.5088 -5.3652 -7.9340 23 6 -1.1508 -6.4865 -4.7641 24 8 -0.8402 -7.3373 -3.9550 25 6 1.0103 -5.0412 -3.2055 26 8 1.5126 -4.5192 -1.9715 27 6 2.3280 -2.7449 2.4434 28 6 2.8554 -2.0147 3.4906 29 6 2.9154 -0.6353 3.4120 30 6 2.4540 0.0158 2.2832 31 1 -0.3933 0.4418 -0.7651 32 1 1.7923 -0.5139 -0.8900 33 1 1.5615 2.4678 1.2085 34 1 3.5346 1.7702 -0.0320 35 1 0.7164 -4.4926 1.2883 36 1 2.3372 -4.6056 0.5612 37 1 -2.2503 -4.4369 -2.2824 38 1 -1.3523 -5.9662 -2.1094 39 1 -2.0120 -8.8495 -6.3303 40 1 -3.0018 -8.6454 -8.5783 41 1 -3.3275 -6.4350 -9.5952 42 1 -2.6502 -4.3957 -8.3883 43 1 1.0041 -6.1304 -3.1654 44 1 1.6440 -4.7082 -4.0274 45 1 2.2765 -3.8217 2.5073 46 1 3.2168 -2.5211 4.3734 47 1 3.3236 -0.0659 4.2338 48 1 2.5019 1.0932 2.2242 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26800_13594088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:17:55 Heat of formation + Delta-G solvation = -113.989023 kcal Electronic energy + Delta-G solvation = -37600.664639 eV Core-core repulsion = 32554.981281 eV Total energy + Delta-G solvation = -5045.683358 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.134 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -43.71842 -41.64551 -41.03882 -39.95954 -39.50042 -38.65100 -37.49865 -37.21661 -37.10525 -34.57494 -32.98493 -32.16751 -31.93171 -30.91699 -29.66693 -27.51688 -26.68944 -26.35994 -25.56458 -24.61791 -23.49619 -23.07720 -22.41463 -22.24184 -21.01997 -19.47518 -19.16241 -18.97769 -18.71518 -18.41044 -17.94956 -17.66160 -17.49475 -17.18083 -16.89460 -16.64487 -16.55327 -16.40252 -16.16894 -15.95438 -15.71952 -15.49292 -15.33543 -15.28345 -15.07113 -15.06338 -14.79538 -14.69876 -14.39194 -14.05940 -13.84055 -13.78349 -13.53400 -13.28814 -13.05860 -12.78417 -12.70254 -12.61213 -12.52328 -12.26537 -12.11375 -12.02204 -11.77240 -11.70845 -11.64053 -10.98507 -10.87254 -10.26482 -10.26293 -10.25123 -10.11842 -9.30356 -4.98917 -1.12040 -0.06513 0.07668 0.29254 0.86430 0.88033 1.26635 1.59696 1.60777 1.89449 1.97726 2.17549 2.26555 2.43841 2.54542 2.56797 3.06240 3.14240 3.20739 3.41458 3.46749 3.53228 3.63555 3.66447 3.74791 3.89461 3.90083 4.02114 4.02504 4.03718 4.05066 4.08858 4.14430 4.17066 4.18473 4.21999 4.28571 4.39512 4.39745 4.44619 4.50220 4.55411 4.80127 4.85330 4.87368 5.16622 5.17870 5.22197 5.24778 5.33349 5.35708 5.40234 5.63931 5.65021 5.71705 5.91261 6.27843 6.33525 6.86657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.075 4.075 3 Si 0.779 3.221 4 C -0.137 4.137 5 C 0.136 3.864 6 O -0.303 6.303 7 C 0.068 3.932 8 C 0.240 3.760 9 H 0.107 0.893 10 O -0.384 6.384 11 C 0.052 3.948 12 C 0.078 3.922 13 H 0.117 0.883 14 N -0.569 5.569 15 C 0.575 3.425 16 O -0.487 6.487 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.043 4.043 20 C -0.084 4.084 21 C -0.083 4.083 22 C -0.044 4.044 23 C 0.576 3.424 24 O -0.481 6.481 25 C 0.052 3.948 26 O -0.385 6.385 27 C -0.214 4.214 28 C -0.073 4.073 29 C -0.160 4.160 30 C -0.104 4.104 31 H 0.396 0.604 32 H 0.066 0.934 33 H -0.282 1.282 34 H -0.287 1.287 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.156 0.844 40 H 0.177 0.823 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.155 0.845 46 H 0.159 0.841 47 H 0.148 0.852 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -5.525 -6.685 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.184 4.184 3 Si 0.684 3.316 4 C -0.138 4.138 5 C 0.090 3.910 6 O -0.216 6.216 7 C -0.007 4.007 8 C 0.146 3.854 9 H 0.124 0.876 10 O -0.304 6.304 11 C -0.025 4.025 12 C -0.024 4.024 13 H 0.135 0.865 14 N -0.314 5.314 15 C 0.367 3.633 16 O -0.360 6.360 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.061 4.061 20 C -0.102 4.102 21 C -0.101 4.101 22 C -0.063 4.063 23 C 0.367 3.633 24 O -0.354 6.354 25 C -0.025 4.025 26 O -0.304 6.304 27 C -0.232 4.232 28 C -0.091 4.091 29 C -0.178 4.178 30 C -0.122 4.122 31 H 0.245 0.755 32 H 0.085 0.915 33 H -0.210 1.210 34 H -0.214 1.214 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.174 0.826 40 H 0.194 0.806 41 H 0.194 0.806 42 H 0.172 0.828 43 H 0.094 0.906 44 H 0.132 0.868 45 H 0.173 0.827 46 H 0.176 0.824 47 H 0.166 0.834 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.402 -4.717 -5.297 7.230 hybrid contribution 0.116 -0.685 0.418 0.811 sum -1.286 -5.402 -4.878 7.391 Atomic orbital electron populations 1.86466 1.17558 1.82475 1.50493 1.24804 0.85715 1.11284 0.96556 0.94289 0.77426 0.75202 0.84713 1.19042 1.05749 0.91363 0.97606 1.19015 0.93293 0.90949 0.87756 1.86224 1.77323 1.19350 1.38746 1.23136 1.02770 0.78838 0.95984 1.23891 0.78057 0.97372 0.86117 0.87638 1.88270 1.27934 1.71282 1.42869 1.23004 0.96549 1.00280 0.82707 1.22549 0.95302 1.00459 0.84093 0.86511 1.46472 1.57844 1.08961 1.18101 1.18789 0.75467 0.87305 0.81776 1.90824 1.52222 1.14434 1.78484 1.20432 1.05761 0.92678 0.97377 1.20451 1.05332 0.95976 0.94560 1.21165 0.93411 0.97456 0.94074 1.21966 0.94842 0.99907 0.93456 1.21959 0.95979 0.90885 1.01294 1.21168 0.92927 1.01664 0.90520 1.18746 0.76313 0.81037 0.87166 1.90789 1.47723 1.48313 1.48611 1.23016 0.92625 0.99325 0.87576 1.88231 1.49868 1.76990 1.15355 1.21644 1.05516 1.01842 0.94213 1.21388 0.95517 0.93725 0.98488 1.21338 1.02659 0.95474 0.98366 1.21019 0.98389 0.99287 0.93500 0.75453 0.91549 1.20960 1.21390 0.87935 0.87543 0.87049 0.90695 0.82639 0.80602 0.80639 0.82840 0.90612 0.86846 0.82733 0.82389 0.83421 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -5.15 12.86 -148.98 -1.92 -7.06 16 2 C -0.07 -0.63 2.37 71.24 0.17 -0.46 16 3 Si 0.78 2.68 30.20 68.60 2.07 4.75 16 4 C -0.14 -1.60 5.30 -19.77 -0.10 -1.71 16 5 C 0.14 1.44 6.66 22.51 0.15 1.59 16 6 O -0.30 -3.31 9.25 -72.86 -0.67 -3.99 16 7 C 0.07 0.22 4.83 71.98 0.35 0.57 16 8 C 0.24 1.08 3.59 71.98 0.26 1.34 16 9 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 10 O -0.38 -3.07 10.43 -121.89 -1.27 -4.35 16 11 C 0.05 0.24 6.33 72.07 0.46 0.70 16 12 C 0.08 0.38 3.08 45.17 0.14 0.52 16 13 H 0.12 0.86 7.59 -2.39 -0.02 0.84 16 14 N -0.57 -2.41 2.53 -739.55 -1.87 -4.28 16 15 C 0.58 3.13 8.02 86.82 0.70 3.83 16 16 O -0.49 -5.28 17.44 -3.55 -0.06 -5.34 16 17 C -0.16 -0.07 6.41 -20.00 -0.13 -0.20 16 18 C -0.16 0.02 6.40 -20.00 -0.13 -0.11 16 19 C -0.04 0.24 10.09 22.44 0.23 0.47 16 20 C -0.08 0.88 10.04 22.36 0.22 1.10 16 21 C -0.08 0.85 10.03 22.36 0.22 1.08 16 22 C -0.04 0.22 10.09 22.44 0.23 0.45 16 23 C 0.58 2.18 7.35 86.82 0.64 2.82 16 24 O -0.48 -3.35 15.16 -3.55 -0.05 -3.41 16 25 C 0.05 0.22 6.32 72.07 0.46 0.67 16 26 O -0.38 -2.75 10.43 -121.89 -1.27 -4.02 16 27 C -0.21 -1.09 9.04 22.37 0.20 -0.88 16 28 C -0.07 -0.24 10.04 22.26 0.22 -0.02 16 29 C -0.16 -0.88 10.04 22.28 0.22 -0.66 16 30 C -0.10 -1.00 8.66 22.25 0.19 -0.81 16 31 H 0.40 -0.36 8.74 -74.05 -0.65 -1.01 16 32 H 0.07 0.57 7.83 -2.39 -0.02 0.56 16 33 H -0.28 -2.36 6.75 99.48 0.67 -1.69 16 34 H -0.29 -2.39 7.11 99.48 0.71 -1.69 16 35 H 0.10 -0.01 7.65 -2.39 -0.02 -0.03 16 36 H 0.11 -0.12 7.67 -2.39 -0.02 -0.14 16 37 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.07 0.31 6.69 -2.39 -0.02 0.30 16 39 H 0.16 -1.32 8.06 -2.91 -0.02 -1.35 16 40 H 0.18 -2.91 8.06 -2.91 -0.02 -2.94 16 41 H 0.18 -2.85 8.06 -2.91 -0.02 -2.88 16 42 H 0.15 -1.12 8.06 -2.91 -0.02 -1.15 16 43 H 0.08 0.29 6.65 -2.39 -0.02 0.27 16 44 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.16 -0.15 6.30 -2.91 -0.02 -0.17 16 46 H 0.16 -0.48 8.06 -2.91 -0.02 -0.50 16 47 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 48 H 0.13 1.05 4.90 -2.91 -0.01 1.04 16 Total: 0.00 -27.34 403.65 0.04 -27.30 By element: Atomic # 1 Polarization: -10.28 SS G_CDS: 0.39 Total: -9.89 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 4.69 Total: 10.29 kcal Atomic # 7 Polarization: -2.41 SS G_CDS: -1.87 Total: -4.28 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -5.25 Total: -28.17 kcal Atomic # 14 Polarization: 2.68 SS G_CDS: 2.07 Total: 4.75 kcal Total: -27.34 0.04 -27.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26800_13594088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.685 kcal (2) G-P(sol) polarization free energy of solvation -27.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds