Wall clock time and date at job start Mon Mar 8 2021 17:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.47017 * 2 1 4 4 C 1.50697 * 109.47213 * 239.99616 * 2 1 3 5 5 C 1.36566 * 120.18887 * 242.55818 * 4 2 1 6 6 O 1.35892 * 119.56500 * 359.97438 * 5 4 2 7 7 C 1.42895 * 116.99864 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46972 * 179.97438 * 7 6 5 9 9 H 1.09003 * 112.84979 * 43.79825 * 8 7 6 10 10 C 1.53780 * 113.61677 * 175.00100 * 8 7 6 11 11 C 1.53778 * 87.08129 * 140.06364 * 10 8 7 12 12 H 1.08999 * 113.61485 * 89.20147 * 11 10 8 13 13 O 1.42909 * 113.61179 * 220.01599 * 11 10 8 14 14 C 1.53781 * 87.08122 * 334.56482 * 11 10 8 15 15 C 1.39853 * 120.87411 * 180.25266 * 5 4 2 16 16 C 1.35987 * 120.93055 * 359.44509 * 15 5 4 17 17 C 1.40601 * 119.73130 * 0.54845 * 16 15 5 18 18 C 1.40487 * 121.22273 * 179.74922 * 17 16 15 19 19 C 1.36136 * 119.66995 * 179.97438 * 18 17 16 20 20 C 1.39336 * 120.99514 * 359.97438 * 19 18 17 21 21 C 1.36124 * 120.97980 * 0.02562 * 20 19 18 22 22 C 1.40464 * 120.18895 * 62.54361 * 4 2 1 23 23 H 0.96699 * 113.99649 * 185.54463 * 1 2 3 24 24 H 1.08998 * 109.46705 * 119.99171 * 2 1 3 25 25 H 1.48499 * 110.00143 * 63.36873 * 3 2 1 26 26 H 1.48499 * 110.00151 * 184.69354 * 3 2 1 27 27 H 1.08994 * 109.47235 * 59.99974 * 7 6 5 28 28 H 1.09003 * 109.47124 * 299.99677 * 7 6 5 29 29 H 1.08998 * 113.61510 * 25.51056 * 10 8 7 30 30 H 1.09007 * 113.68750 * 254.62482 * 10 8 7 31 31 H 0.96698 * 113.99589 * 179.97438 * 13 11 10 32 32 H 1.09008 * 113.61097 * 139.98149 * 14 11 10 33 33 H 1.08993 * 113.61637 * 270.88328 * 14 11 10 34 34 H 1.07993 * 119.53711 * 179.73078 * 15 5 4 35 35 H 1.07997 * 120.13281 * 180.29681 * 16 15 5 36 36 H 1.07992 * 120.16191 * 359.95519 * 18 17 16 37 37 H 1.08003 * 119.50317 * 180.02562 * 19 18 17 38 38 H 1.07998 * 119.50836 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.16631 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.6732 -1.8508 -1.1102 6 8 2.9555 -2.3398 0.1259 7 6 3.7349 -3.5359 0.1878 8 6 3.9491 -3.9298 1.6507 9 1 3.0429 -3.8412 2.2499 10 6 4.6751 -5.2740 1.8268 11 6 5.4424 -4.6180 2.9868 12 1 4.9452 -4.7188 3.9515 13 8 6.8247 -4.9776 3.0346 14 6 5.1802 -3.2702 2.2942 15 6 3.1511 -2.5188 -2.2421 16 6 2.8806 -2.0571 -3.4923 17 6 2.1197 -0.8858 -3.6536 18 6 1.8261 -0.3782 -4.9302 19 6 1.0862 0.7583 -5.0498 20 6 0.6132 1.4283 -3.9234 21 6 0.8778 0.9661 -2.6706 22 6 1.6391 -0.2038 -2.5074 23 1 -0.3933 -0.8793 0.0854 24 1 1.7923 -0.5137 0.8901 25 1 1.6296 2.4438 1.2474 26 1 3.5305 1.7718 -0.1142 27 1 4.7009 -3.3652 -0.2872 28 1 3.2111 -4.3382 -0.3319 29 1 5.3080 -5.5425 0.9810 30 1 4.0207 -6.0873 2.1407 31 1 7.3127 -4.5678 3.7619 32 1 4.9325 -2.4649 2.9859 33 1 5.9512 -2.9909 1.5763 34 1 3.7394 -3.4164 -2.1219 35 1 3.2521 -2.5858 -4.3576 36 1 2.1859 -0.8868 -5.8123 37 1 0.8617 1.1459 -6.0325 38 1 0.0280 2.3277 -4.0460 39 1 0.5042 1.4957 -1.8066 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26801_11354858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:07:14 Heat of formation + Delta-G solvation = -44.884283 kcal Electronic energy + Delta-G solvation = -22527.513250 eV Core-core repulsion = 19174.741167 eV Total energy + Delta-G solvation = -3352.772083 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96422 -40.67221 -39.56519 -37.88425 -36.60573 -35.94847 -33.82948 -30.91775 -30.83397 -29.01371 -26.84339 -26.69213 -24.54168 -24.00204 -23.06121 -21.88701 -20.66023 -19.41058 -18.85825 -18.64494 -17.84168 -17.37870 -17.13611 -16.59639 -16.37820 -15.88727 -15.85857 -15.60869 -15.11696 -14.79234 -14.51346 -14.22363 -14.17319 -13.99545 -13.92202 -13.54816 -13.24481 -12.84369 -12.66570 -12.44581 -12.37228 -12.20665 -12.09975 -11.94349 -11.62488 -11.48050 -11.28717 -10.98793 -10.82350 -10.56076 -9.38474 -8.67468 -4.94860 -0.48855 0.04573 1.00217 1.31977 1.55411 1.80792 2.00655 2.01208 3.10370 3.22558 3.37290 3.46963 3.49305 3.71407 3.75394 3.80099 3.85488 3.93049 3.99011 4.04856 4.15119 4.19216 4.23367 4.31355 4.40655 4.45768 4.50508 4.60204 4.67018 4.70227 4.71386 4.89387 4.93153 5.03215 5.05051 5.18335 5.23601 5.25370 5.30111 5.62006 5.65444 5.71312 6.05790 6.27250 6.60673 6.79874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.065 4.065 3 Si 0.776 3.224 4 C -0.177 4.177 5 C 0.133 3.867 6 O -0.326 6.326 7 C 0.067 3.933 8 C -0.105 4.105 9 H 0.107 0.893 10 C -0.118 4.118 11 C 0.075 3.925 12 H 0.099 0.901 13 O -0.581 6.581 14 C -0.166 4.166 15 C -0.205 4.205 16 C -0.056 4.056 17 C -0.105 4.105 18 C -0.098 4.098 19 C -0.132 4.132 20 C -0.096 4.096 21 C -0.125 4.125 22 C -0.015 4.015 23 H 0.375 0.625 24 H 0.071 0.929 25 H -0.279 1.279 26 H -0.284 1.284 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.395 0.605 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -1.299 -2.332 2.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.174 4.174 3 Si 0.678 3.322 4 C -0.178 4.178 5 C 0.087 3.913 6 O -0.240 6.240 7 C -0.007 4.007 8 C -0.123 4.123 9 H 0.125 0.875 10 C -0.156 4.156 11 C 0.016 3.984 12 H 0.116 0.884 13 O -0.389 6.389 14 C -0.204 4.204 15 C -0.223 4.223 16 C -0.074 4.074 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.150 4.150 20 C -0.114 4.114 21 C -0.142 4.142 22 C -0.016 4.016 23 H 0.224 0.776 24 H 0.089 0.911 25 H -0.205 1.205 26 H -0.210 1.210 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.245 0.755 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.066 -0.370 -2.310 2.341 hybrid contribution 0.468 -1.545 1.280 2.060 sum 0.534 -1.915 -1.030 2.239 Atomic orbital electron populations 1.86665 1.16924 1.34703 1.96618 1.25057 0.84733 1.12622 0.94948 0.92495 0.77537 0.76577 0.85589 1.19400 1.05422 0.97364 0.95634 1.18654 0.95146 0.93012 0.84478 1.86034 1.69249 1.42808 1.25933 1.22981 0.94852 0.84920 0.97986 1.22298 0.98601 0.97092 0.94354 0.87473 1.23060 0.97774 0.96128 0.98596 1.23396 0.82262 0.94253 0.98485 0.88355 1.86478 1.21912 1.73983 1.56529 1.23767 0.97667 0.98235 1.00720 1.21255 1.05563 1.03164 0.92332 1.21295 0.94341 0.93961 0.97796 1.18351 1.01294 0.97007 0.93826 1.21326 0.97696 0.96611 0.95926 1.21236 0.98019 0.95715 1.00007 1.21305 0.98033 1.00311 0.91723 1.21021 0.99498 0.95188 0.98458 1.17789 0.97083 0.95531 0.91148 0.77636 0.91098 1.20506 1.21011 0.91378 0.90365 0.89262 0.89080 0.75491 0.90953 0.90023 0.83438 0.82413 0.83423 0.83505 0.83049 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.64 11.58 -148.98 -1.73 -4.37 16 2 C -0.07 -0.41 2.62 71.23 0.19 -0.23 16 3 Si 0.78 4.72 29.08 68.60 1.99 6.72 16 4 C -0.18 -1.23 4.58 -19.71 -0.09 -1.32 16 5 C 0.13 0.81 6.61 22.27 0.15 0.96 16 6 O -0.33 -1.72 8.81 -92.33 -0.81 -2.53 16 7 C 0.07 -0.01 4.57 71.98 0.33 0.32 16 8 C -0.11 0.15 4.01 -10.27 -0.04 0.11 16 9 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 10 C -0.12 0.24 7.47 31.12 0.23 0.48 16 11 C 0.07 -0.10 5.21 31.12 0.16 0.07 16 12 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 13 O -0.58 -0.80 13.67 -148.98 -2.04 -2.84 16 14 C -0.17 0.06 7.47 31.12 0.23 0.29 16 15 C -0.20 -0.51 8.93 22.14 0.20 -0.31 16 16 C -0.06 -0.07 9.76 22.32 0.22 0.15 16 17 C -0.10 -0.40 5.74 -21.28 -0.12 -0.52 16 18 C -0.10 0.00 9.77 22.33 0.22 0.22 16 19 C -0.13 0.17 9.95 22.04 0.22 0.39 16 20 C -0.10 0.05 9.95 22.04 0.22 0.27 16 21 C -0.12 -0.37 7.71 22.34 0.17 -0.20 16 22 C -0.02 -0.09 5.41 -21.30 -0.12 -0.21 16 23 H 0.38 0.02 9.11 -74.06 -0.67 -0.65 16 24 H 0.07 0.53 6.76 -2.39 -0.02 0.51 16 25 H -0.28 -2.86 7.11 99.48 0.71 -2.15 16 26 H -0.28 -3.14 7.11 99.48 0.71 -2.43 16 27 H 0.07 -0.05 7.33 -2.39 -0.02 -0.07 16 28 H 0.08 -0.20 7.65 -2.39 -0.02 -0.22 16 29 H 0.09 -0.09 8.10 -2.39 -0.02 -0.11 16 30 H 0.09 -0.37 8.14 -2.38 -0.02 -0.39 16 31 H 0.40 -2.52 9.12 -74.06 -0.68 -3.20 16 32 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 33 H 0.08 0.13 7.90 -2.39 -0.02 0.11 16 34 H 0.15 -0.29 6.21 -2.91 -0.02 -0.31 16 35 H 0.16 -0.73 8.06 -2.91 -0.02 -0.76 16 36 H 0.15 -0.73 8.06 -2.91 -0.02 -0.76 16 37 H 0.15 -0.90 8.06 -2.91 -0.02 -0.92 16 38 H 0.15 -0.87 8.06 -2.91 -0.02 -0.89 16 39 H 0.14 0.21 4.25 -2.91 -0.01 0.19 16 Total: 0.00 -14.65 318.34 -0.64 -15.30 By element: Atomic # 1 Polarization: -12.50 SS G_CDS: -0.23 Total: -12.73 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 2.17 Total: 0.46 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -4.58 Total: -9.74 kcal Atomic # 14 Polarization: 4.72 SS G_CDS: 1.99 Total: 6.72 kcal Total: -14.65 -0.64 -15.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26801_11354858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.589 kcal (2) G-P(sol) polarization free energy of solvation -14.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds