Wall clock time and date at job start Mon Mar 8 2021 14:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47310 * 2 1 4 4 C 1.53002 * 109.47288 * 240.00085 * 2 1 3 5 5 Si 1.86299 * 109.47140 * 120.00132 * 2 1 3 6 6 C 1.86299 * 109.46909 * 299.99978 * 5 2 1 7 7 C 1.86302 * 109.47277 * 179.97438 * 5 2 1 8 8 O 1.63106 * 109.47192 * 59.99824 * 5 2 1 9 9 C 1.42900 * 114.00053 * 180.02562 * 8 5 2 10 10 C 1.53000 * 109.47114 * 180.02562 * 9 8 5 11 11 C 1.52997 * 109.47223 * 180.02562 * 10 9 8 12 12 O 1.42892 * 109.47375 * 179.97438 * 11 10 9 13 13 C 1.35889 * 117.00295 * 179.97438 * 12 11 10 14 14 C 1.39804 * 119.56430 * 359.72223 * 13 12 11 15 15 C 1.36023 * 120.92961 * 179.75289 * 14 13 12 16 16 C 1.40551 * 119.72551 * 0.51815 * 15 14 13 17 17 C 1.40537 * 121.21643 * 179.76359 * 16 15 14 18 18 C 1.36093 * 119.67023 * 179.97438 * 17 16 15 19 19 C 1.39381 * 120.99846 * 359.97438 * 18 17 16 20 20 C 1.36083 * 120.98865 * 0.02562 * 19 18 17 21 21 C 1.40585 * 119.65656 * 359.97438 * 20 19 18 22 22 C 1.36604 * 119.56737 * 179.97438 * 13 12 11 23 23 C 1.50708 * 120.18911 * 359.95438 * 22 13 12 24 24 O 1.42904 * 109.46930 * 53.53694 * 23 22 13 25 25 Si 1.86298 * 109.47246 * 293.53863 * 23 22 13 26 26 H 1.48504 * 109.47083 * 65.52216 * 25 23 22 27 27 H 1.48498 * 109.47141 * 185.52687 * 25 23 22 28 28 H 1.48504 * 109.46903 * 305.52302 * 25 23 22 29 29 H 1.08996 * 109.46830 * 300.00016 * 1 2 3 30 30 H 1.08996 * 109.46597 * 59.99906 * 1 2 3 31 31 H 1.09003 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47114 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47136 * 300.00084 * 3 2 1 34 34 H 1.08996 * 109.47188 * 60.00203 * 3 2 1 35 35 H 1.09003 * 109.47175 * 300.00260 * 4 2 1 36 36 H 1.09000 * 109.47033 * 59.99992 * 4 2 1 37 37 H 1.08995 * 109.47506 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.46950 * 179.97438 * 6 5 2 39 39 H 1.09003 * 109.47345 * 299.99749 * 6 5 2 40 40 H 1.08995 * 109.47419 * 59.99975 * 6 5 2 41 41 H 1.08996 * 109.47025 * 300.00055 * 7 5 2 42 42 H 1.09003 * 109.46892 * 60.00302 * 7 5 2 43 43 H 1.09000 * 109.47228 * 179.97438 * 7 5 2 44 44 H 1.09002 * 109.46734 * 60.00050 * 9 8 5 45 45 H 1.08996 * 109.46887 * 300.00175 * 9 8 5 46 46 H 1.08998 * 109.47183 * 59.99592 * 10 9 8 47 47 H 1.09006 * 109.46826 * 300.00059 * 10 9 8 48 48 H 1.09006 * 109.46604 * 299.99947 * 11 10 9 49 49 H 1.08999 * 109.47131 * 59.99304 * 11 10 9 50 50 H 1.08001 * 119.53583 * 0.02562 * 14 13 12 51 51 H 1.07996 * 120.13379 * 180.26347 * 15 14 13 52 52 H 1.08001 * 120.16215 * 0.02562 * 17 16 15 53 53 H 1.08001 * 119.50038 * 179.97438 * 18 17 16 54 54 H 1.08005 * 119.50464 * 179.97438 * 19 18 17 55 55 H 1.08000 * 120.17276 * 180.02562 * 20 19 18 56 56 H 1.08998 * 109.46691 * 173.53591 * 23 22 13 57 57 H 0.96701 * 114.00031 * 65.32869 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 0.0000 3.0422 7 6 4.0140 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5211 9 6 2.0285 -3.1814 2.6519 10 6 1.4637 -4.5995 2.5470 11 6 1.9141 -5.4188 3.7580 12 8 1.3861 -6.7430 3.6603 13 6 1.6948 -7.6059 4.6636 14 6 2.5014 -7.1744 5.7209 15 6 2.8235 -8.0132 6.7420 16 6 2.3499 -9.3365 6.7327 17 6 2.6675 -10.2311 7.7690 18 6 2.1915 -11.5054 7.7285 19 6 1.3910 -11.9394 6.6732 20 6 1.0626 -11.1016 5.6523 21 6 1.5357 -9.7778 5.6593 22 6 1.2172 -8.8851 4.6234 23 6 0.3528 -9.3355 3.4739 24 8 1.0206 -9.0626 2.2403 25 14 -1.2679 -8.4178 3.5189 26 1 -1.0260 -6.9736 3.2719 27 1 -2.1704 -8.9553 2.4692 28 1 -1.8991 -8.5932 4.8516 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2491 38 1 1.8930 -0.5141 3.9322 39 1 1.8934 1.0277 3.0423 40 1 0.4400 0.0000 3.0422 41 1 4.3770 -1.3930 0.6308 42 1 4.3777 0.1486 1.5206 43 1 4.3774 -1.3924 2.4110 44 1 1.6636 -2.7112 3.5651 45 1 3.1173 -3.2252 2.6758 46 1 1.8288 -5.0693 1.6337 47 1 0.3748 -4.5559 2.5228 48 1 3.0030 -5.4623 3.7825 49 1 1.5486 -4.9487 4.6710 50 1 2.8703 -6.1593 5.7291 51 1 3.4441 -7.6651 7.5544 52 1 3.2857 -9.9086 8.5938 53 1 2.4376 -12.1907 8.5261 54 1 1.0266 -12.9561 6.6652 55 1 0.4411 -11.4517 4.8414 56 1 0.1666 -10.4062 3.5572 57 1 1.8333 -9.5708 2.1122 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26801_18527724.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:54:56 Heat of formation + Delta-G solvation = -125.220175 kcal Electronic energy + Delta-G solvation = -32435.144195 eV Core-core repulsion = 28304.757428 eV Total energy + Delta-G solvation = -4130.386766 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.203 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.87048 -39.96820 -38.27275 -37.73027 -36.83348 -36.45670 -34.04046 -33.28285 -30.87740 -30.15530 -29.37098 -29.06473 -27.84399 -27.38475 -26.90911 -26.45457 -24.38063 -23.59642 -22.59655 -21.66677 -20.42499 -19.36578 -18.59364 -18.33081 -17.65884 -17.50685 -17.16887 -16.49937 -16.34771 -15.96698 -15.90163 -15.62364 -15.26604 -15.14277 -14.89156 -14.84350 -14.76322 -14.65445 -14.42409 -14.04861 -13.94816 -13.87822 -13.79101 -13.39871 -13.38568 -13.28580 -13.16444 -12.96245 -12.93714 -12.79340 -12.46649 -12.40491 -12.34195 -12.24391 -12.16138 -12.05776 -11.90640 -11.74277 -11.70073 -11.49109 -11.38720 -11.28586 -11.28202 -10.85260 -10.52749 -10.30717 -10.05816 -9.35925 -8.59608 -0.47253 0.06646 0.99437 1.23954 1.41757 1.49586 1.53871 1.78405 1.96462 2.09709 2.13291 2.23247 2.56090 3.11587 3.52483 3.70925 3.85135 3.90695 3.95251 3.99010 4.04982 4.11044 4.12077 4.12571 4.20271 4.30267 4.33720 4.37759 4.39474 4.43482 4.44643 4.46257 4.50862 4.71199 4.74794 4.75472 4.78410 4.79784 4.81861 4.82455 4.91423 4.99439 5.05149 5.07160 5.08660 5.08763 5.10684 5.21115 5.22059 5.25875 5.29316 5.34368 5.40169 5.44532 5.55575 5.59557 5.61143 5.62237 5.64675 5.74775 6.04138 6.43020 6.76881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.385 4.385 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.314 2.686 6 C -0.517 4.517 7 C -0.516 4.516 8 O -0.643 6.643 9 C 0.082 3.918 10 C -0.121 4.121 11 C 0.048 3.952 12 O -0.309 6.309 13 C 0.141 3.859 14 C -0.200 4.200 15 C -0.059 4.059 16 C -0.107 4.107 17 C -0.097 4.097 18 C -0.140 4.140 19 C -0.104 4.104 20 C -0.141 4.141 21 C -0.018 4.018 22 C -0.181 4.181 23 C -0.067 4.067 24 O -0.543 6.543 25 Si 1.011 2.989 26 H -0.255 1.255 27 H -0.265 1.265 28 H -0.260 1.260 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.155 0.845 51 H 0.158 0.842 52 H 0.147 0.853 53 H 0.142 0.858 54 H 0.143 0.857 55 H 0.142 0.858 56 H 0.089 0.911 57 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 0.023 4.291 5.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.427 4.427 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.444 2.556 6 C -0.618 4.618 7 C -0.618 4.618 8 O -0.602 6.602 9 C 0.007 3.993 10 C -0.158 4.158 11 C -0.026 4.026 12 O -0.222 6.222 13 C 0.095 3.905 14 C -0.219 4.219 15 C -0.076 4.076 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.158 4.158 19 C -0.121 4.121 20 C -0.159 4.159 21 C -0.018 4.018 22 C -0.183 4.183 23 C -0.176 4.176 24 O -0.349 6.349 25 Si 0.832 3.168 26 H -0.179 1.179 27 H -0.190 1.190 28 H -0.184 1.184 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.097 0.903 50 H 0.173 0.827 51 H 0.175 0.825 52 H 0.165 0.835 53 H 0.160 0.840 54 H 0.161 0.839 55 H 0.159 0.841 56 H 0.107 0.893 57 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.880 0.675 3.891 4.374 hybrid contribution 1.107 -0.070 0.036 1.110 sum 2.988 0.605 3.927 4.972 Atomic orbital electron populations 1.21540 0.94423 1.01626 1.01837 1.25957 1.00297 1.03170 1.13312 1.21597 1.01327 0.94576 1.02205 1.21540 1.01066 0.99917 0.96892 0.76235 0.62734 0.52571 0.64065 1.27077 1.06783 1.09897 1.18086 1.27065 1.24941 1.05097 1.04669 1.85325 1.79816 1.46815 1.48274 1.21997 0.99223 0.90781 0.87324 1.21479 1.02329 0.93992 0.98045 1.22916 0.99688 0.80405 0.99638 1.86245 1.70379 1.22375 1.43246 1.18633 0.94393 0.89495 0.87981 1.21328 1.02499 1.02659 0.95377 1.21269 0.96824 0.91573 0.97971 1.18364 1.00635 0.95508 0.96190 1.21320 0.99091 0.93495 0.97567 1.21181 0.98476 0.96707 0.99397 1.21229 0.96769 1.00641 0.93498 1.21269 1.01698 0.92468 1.00469 1.17815 0.96586 0.94022 0.93407 1.19396 1.06605 0.92467 0.99807 1.24884 1.04176 1.05311 0.83223 1.86717 1.42637 1.69523 1.36016 0.84450 0.73091 0.80032 0.79189 1.17851 1.18990 1.18393 0.92033 0.93381 0.92783 0.91698 0.93226 0.91738 0.92760 0.93389 0.91980 0.90733 0.90289 0.91327 0.91241 0.90307 0.90706 0.90760 0.90545 0.90679 0.91358 0.89813 0.90264 0.82719 0.82464 0.83517 0.84024 0.83915 0.84074 0.89276 0.77638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.21 7.85 71.98 0.56 0.36 16 2 C -0.39 -0.06 0.53 -10.79 -0.01 -0.06 16 3 C -0.14 0.15 7.85 71.98 0.56 0.72 16 4 C -0.14 -0.19 7.85 71.98 0.56 0.37 16 5 Si 1.31 -3.15 8.45 68.60 0.58 -2.57 16 6 C -0.52 1.29 8.50 113.37 0.96 2.25 16 7 C -0.52 1.38 8.50 113.37 0.96 2.34 16 8 O -0.64 -0.67 8.56 -148.98 -1.28 -1.95 16 9 C 0.08 -0.21 5.12 71.98 0.37 0.16 16 10 C -0.12 -0.08 5.95 30.59 0.18 0.10 16 11 C 0.05 -0.05 4.73 71.98 0.34 0.29 16 12 O -0.31 -1.72 6.92 -77.92 -0.54 -2.26 16 13 C 0.14 0.69 6.09 22.27 0.14 0.83 16 14 C -0.20 -0.12 8.93 22.13 0.20 0.07 16 15 C -0.06 0.00 9.76 22.32 0.22 0.22 16 16 C -0.11 -0.35 5.74 -21.28 -0.12 -0.47 16 17 C -0.10 -0.02 9.77 22.33 0.22 0.19 16 18 C -0.14 0.06 9.95 22.05 0.22 0.27 16 19 C -0.10 -0.01 9.95 22.04 0.22 0.21 16 20 C -0.14 -0.31 9.36 22.34 0.21 -0.11 16 21 C -0.02 -0.09 5.74 -21.30 -0.12 -0.21 16 22 C -0.18 -1.00 4.48 -19.72 -0.09 -1.09 16 23 C -0.07 -0.29 2.53 71.24 0.18 -0.11 16 24 O -0.54 -2.87 11.69 -134.59 -1.57 -4.44 16 25 Si 1.01 6.82 27.03 68.60 1.85 8.67 16 26 H -0.25 -2.49 6.54 99.48 0.65 -1.84 16 27 H -0.27 -2.06 7.11 99.48 0.71 -1.35 16 28 H -0.26 -1.81 7.11 99.48 0.71 -1.10 16 29 H 0.06 -0.01 7.79 -2.39 -0.02 -0.03 16 30 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.05 0.14 7.97 -2.39 -0.02 0.12 16 32 H 0.06 -0.18 7.80 -2.38 -0.02 -0.20 16 33 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 35 H 0.05 0.14 7.97 -2.39 -0.02 0.12 16 36 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 38 H 0.07 -0.30 7.48 -2.39 -0.02 -0.32 16 39 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 40 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 41 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 42 H 0.08 -0.26 7.79 -2.39 -0.02 -0.28 16 43 H 0.07 -0.32 7.48 -2.39 -0.02 -0.33 16 44 H 0.07 -0.46 7.21 -2.39 -0.02 -0.48 16 45 H 0.08 -0.50 7.21 -2.39 -0.02 -0.51 16 46 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 48 H 0.08 -0.41 7.62 -2.38 -0.02 -0.43 16 49 H 0.08 -0.35 7.65 -2.39 -0.02 -0.37 16 50 H 0.16 -0.77 6.21 -2.91 -0.02 -0.79 16 51 H 0.16 -0.92 8.06 -2.91 -0.02 -0.94 16 52 H 0.15 -0.69 8.06 -2.91 -0.02 -0.71 16 53 H 0.14 -0.67 8.06 -2.91 -0.02 -0.69 16 54 H 0.14 -0.62 8.06 -2.91 -0.02 -0.65 16 55 H 0.14 -0.19 5.96 -2.91 -0.02 -0.21 16 56 H 0.09 0.01 5.42 -2.39 -0.01 0.00 16 57 H 0.38 -0.27 9.11 -74.06 -0.67 -0.94 16 Total: 0.00 -13.96 445.14 5.67 -8.28 By element: Atomic # 1 Polarization: -12.93 SS G_CDS: 0.86 Total: -12.07 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.77 Total: 6.33 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -3.39 Total: -8.65 kcal Atomic # 14 Polarization: 3.67 SS G_CDS: 2.43 Total: 6.10 kcal Total: -13.96 5.67 -8.28 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26801_18527724.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.936 kcal (2) G-P(sol) polarization free energy of solvation -13.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds