Wall clock time and date at job start Mon Mar 8 2021 16:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86304 * 109.47151 * 2 1 4 4 C 1.86296 * 109.47213 * 240.00041 * 2 1 3 5 5 C 1.86299 * 109.47326 * 119.99579 * 2 1 3 6 6 O 1.42898 * 109.47119 * 294.95104 * 5 2 1 7 7 C 1.35887 * 116.99876 * 282.65445 * 6 5 2 8 8 C 1.39809 * 119.56688 * 354.30947 * 7 6 5 9 9 C 1.36015 * 120.93043 * 179.75324 * 8 7 6 10 10 C 1.40556 * 119.73156 * 0.51972 * 9 8 7 11 11 C 1.40532 * 121.22224 * 179.76751 * 10 9 8 12 12 C 1.36098 * 119.67122 * 179.97438 * 11 10 9 13 13 C 1.39385 * 120.99780 * 359.97438 * 12 11 10 14 14 C 1.36085 * 120.98450 * 0.02562 * 13 12 11 15 15 C 1.40578 * 119.65861 * 359.97438 * 14 13 12 16 16 C 1.36605 * 119.56678 * 174.58393 * 7 6 5 17 17 C 1.50702 * 120.18987 * 359.95789 * 16 7 6 18 18 O 1.42900 * 109.46942 * 62.14255 * 17 16 7 19 19 Si 1.86296 * 109.47105 * 302.14153 * 17 16 7 20 20 H 1.48500 * 109.47013 * 67.34403 * 19 17 16 21 21 H 1.48495 * 109.47242 * 187.34804 * 19 17 16 22 22 H 1.48503 * 109.47176 * 307.34747 * 19 17 16 23 23 H 1.08999 * 109.47165 * 305.35637 * 1 2 3 24 24 H 1.08999 * 109.46899 * 65.35241 * 1 2 3 25 25 H 1.09003 * 109.47198 * 185.35225 * 1 2 3 26 26 H 1.08995 * 109.47760 * 177.95763 * 3 2 1 27 27 H 1.09011 * 109.46903 * 297.95819 * 3 2 1 28 28 H 1.09006 * 109.47402 * 57.95150 * 3 2 1 29 29 H 1.09005 * 109.46983 * 299.99594 * 4 2 1 30 30 H 1.08997 * 109.47596 * 59.99848 * 4 2 1 31 31 H 1.09002 * 109.47233 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46864 * 54.94585 * 5 2 1 33 33 H 1.08998 * 109.47240 * 174.94535 * 5 2 1 34 34 H 1.07999 * 119.52909 * 359.97438 * 8 7 6 35 35 H 1.08003 * 120.13865 * 180.25603 * 9 8 7 36 36 H 1.08002 * 120.16654 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.50087 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.50150 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.16871 * 180.02562 * 14 13 12 40 40 H 1.09004 * 109.47146 * 182.14346 * 17 16 7 41 41 H 0.96696 * 114.00172 * 65.20082 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8781 1.5212 6 8 2.1070 -0.1394 2.6849 7 6 2.8355 0.9707 2.9738 8 6 3.9694 1.2692 2.2123 9 6 4.7159 2.3756 2.4740 10 6 4.3522 3.2279 3.5309 11 6 5.1037 4.3766 3.8320 12 6 4.7226 5.1802 4.8622 13 6 3.5953 4.8822 5.6259 14 6 2.8433 3.7786 5.3639 15 6 3.2056 2.9247 4.3076 16 6 2.4537 1.7772 4.0080 17 6 1.2317 1.4381 4.8223 18 8 1.4266 0.1806 5.4725 19 14 -0.2524 1.3341 3.7011 20 1 -0.1079 0.1659 2.7957 21 1 -1.4813 1.1768 4.5198 22 1 -0.3510 2.5766 2.8938 23 1 -0.3633 0.5947 0.8381 24 1 -0.3633 0.4286 -0.9340 25 1 -0.3634 -1.0232 0.0959 26 1 3.5733 1.7568 0.0366 27 1 2.1508 2.2597 -0.9078 28 1 2.0910 2.2809 0.8711 29 1 2.1207 -1.9059 -1.5211 30 1 2.1207 -0.3644 -2.4111 31 1 3.5740 -0.8778 -1.5213 32 1 2.0486 -1.8763 1.5676 33 1 3.5702 -0.9572 1.4770 34 1 4.2545 0.6139 1.4026 35 1 5.5871 2.5962 1.8750 36 1 5.9794 4.6206 3.2487 37 1 5.3023 6.0620 5.0914 38 1 3.3146 5.5368 6.4376 39 1 1.9721 3.5605 5.9638 40 1 1.0677 2.2129 5.5713 41 1 2.1340 0.1842 6.1317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26801_3095236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:03:56 Heat of formation + Delta-G solvation = -53.081306 kcal Electronic energy + Delta-G solvation = -22006.889665 eV Core-core repulsion = 18976.001362 eV Total energy + Delta-G solvation = -3030.888303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.89911 -39.80627 -37.66258 -36.40712 -33.88780 -31.14257 -30.51504 -29.68161 -28.55798 -28.39039 -27.62418 -26.58232 -24.21816 -23.42822 -21.77700 -19.17375 -18.64425 -18.36582 -17.34461 -16.90934 -16.47485 -15.82025 -15.61207 -15.46417 -14.95502 -14.72869 -14.50964 -14.40258 -14.15347 -14.09093 -13.87434 -13.74276 -13.54014 -13.50834 -13.33596 -13.26621 -13.11134 -12.60713 -12.23000 -12.10385 -11.98374 -11.85376 -11.48529 -11.18752 -10.97894 -10.94058 -10.77194 -10.69752 -10.32384 -9.21350 -8.49068 -0.43499 0.12132 1.05316 1.37429 1.41850 1.62246 1.67929 1.70116 1.75638 2.04417 2.27035 2.44855 2.54000 3.16111 3.56315 3.71980 3.89414 3.95669 4.03237 4.11847 4.21650 4.26952 4.37441 4.42218 4.49184 4.58911 4.59649 4.62690 4.66956 4.70020 4.72538 4.73504 4.79399 4.90039 5.09032 5.20556 5.25867 5.33010 5.35213 5.48378 5.51781 5.60792 5.63697 5.77797 6.03262 6.43937 6.74522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 0.970 3.030 3 C -0.449 4.449 4 C -0.443 4.443 5 C -0.247 4.247 6 O -0.273 6.273 7 C 0.146 3.854 8 C -0.185 4.185 9 C -0.063 4.063 10 C -0.085 4.085 11 C -0.091 4.091 12 C -0.131 4.131 13 C -0.100 4.100 14 C -0.126 4.126 15 C -0.001 4.001 16 C -0.168 4.168 17 C -0.073 4.073 18 O -0.531 6.531 19 Si 0.982 3.018 20 H -0.216 1.216 21 H -0.258 1.258 22 H -0.252 1.252 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 0.980 -1.588 2.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.167 2.833 3 C -0.557 4.557 4 C -0.552 4.552 5 C -0.368 4.368 6 O -0.185 6.185 7 C 0.099 3.901 8 C -0.203 4.203 9 C -0.081 4.081 10 C -0.085 4.085 11 C -0.109 4.109 12 C -0.149 4.149 13 C -0.118 4.118 14 C -0.144 4.144 15 C -0.001 4.001 16 C -0.169 4.169 17 C -0.181 4.181 18 O -0.335 6.335 19 Si 0.801 3.199 20 H -0.138 1.138 21 H -0.182 1.182 22 H -0.176 1.176 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.089 0.911 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.515 0.625 -2.387 2.520 hybrid contribution 1.318 0.244 0.628 1.480 sum 1.833 0.869 -1.759 2.685 Atomic orbital electron populations 1.26138 1.19682 1.04953 1.04707 0.80115 0.69041 0.68356 0.65778 1.26466 1.06470 1.17890 1.04831 1.26010 1.06287 1.08153 1.14726 1.28134 1.05422 1.03026 1.00241 1.86325 1.52352 1.35511 1.44310 1.18473 0.90699 0.87319 0.93569 1.21079 0.96581 1.00330 1.02300 1.20903 0.98566 0.93087 0.95576 1.18024 0.96303 0.96837 0.97314 1.21029 0.98906 0.93571 0.97374 1.20857 0.97551 1.00205 0.96317 1.20913 0.94822 0.96880 0.99192 1.21048 1.00619 0.95180 0.97570 1.17590 0.93628 0.93774 0.95152 1.19227 1.01094 0.96724 0.99859 1.25012 1.03878 0.88793 1.00441 1.86755 1.58473 1.30928 1.57391 0.84961 0.74160 0.82155 0.78608 1.13844 1.18235 1.17557 0.90987 0.90904 0.90853 0.90500 0.90914 0.90936 0.90912 0.90663 0.91040 0.87183 0.90885 0.84555 0.84994 0.85540 0.85899 0.85800 0.85237 0.91074 0.78964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.09 8.61 101.05 0.87 0.96 16 2 Si 0.97 -1.75 11.65 -169.99 -1.98 -3.73 16 3 C -0.45 0.36 7.02 101.05 0.71 1.07 16 4 C -0.44 0.92 8.65 101.05 0.87 1.79 16 5 C -0.25 0.16 5.31 101.05 0.54 0.69 16 6 O -0.27 -0.61 6.03 -22.88 -0.14 -0.75 16 7 C 0.15 0.32 4.71 -39.58 -0.19 0.13 16 8 C -0.18 -0.11 5.37 -39.79 -0.21 -0.32 16 9 C -0.06 -0.03 9.73 -39.51 -0.38 -0.42 16 10 C -0.08 -0.16 5.74 -106.81 -0.61 -0.77 16 11 C -0.09 -0.07 9.77 -39.49 -0.39 -0.45 16 12 C -0.13 -0.06 9.95 -39.92 -0.40 -0.46 16 13 C -0.10 -0.05 9.95 -39.93 -0.40 -0.45 16 14 C -0.13 -0.16 9.37 -39.47 -0.37 -0.53 16 15 C 0.00 0.00 5.74 -106.84 -0.61 -0.62 16 16 C -0.17 -0.43 4.60 -104.39 -0.48 -0.91 16 17 C -0.07 -0.15 2.55 36.01 0.09 -0.05 16 18 O -0.53 -1.32 12.20 -38.72 -0.47 -1.80 16 19 Si 0.98 2.57 25.50 -169.99 -4.34 -1.76 16 20 H -0.22 -0.57 5.02 56.52 0.28 -0.29 16 21 H -0.26 -0.84 7.11 56.52 0.40 -0.44 16 22 H -0.25 -0.63 7.11 56.52 0.40 -0.23 16 23 H 0.07 0.06 5.67 -51.93 -0.29 -0.24 16 24 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 25 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 26 H 0.08 -0.12 5.91 -51.93 -0.31 -0.43 16 27 H 0.07 -0.08 7.96 -51.92 -0.41 -0.50 16 28 H 0.07 0.05 6.74 -51.93 -0.35 -0.30 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 32 H 0.11 -0.17 7.96 -51.93 -0.41 -0.58 16 33 H 0.07 -0.14 6.08 -51.93 -0.32 -0.45 16 34 H 0.14 -0.23 4.50 -52.49 -0.24 -0.47 16 35 H 0.13 -0.25 8.06 -52.48 -0.42 -0.67 16 36 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 37 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 38 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 39 H 0.13 -0.07 5.94 -52.49 -0.31 -0.38 16 40 H 0.07 0.01 5.39 -51.93 -0.28 -0.27 16 41 H 0.36 -0.16 9.11 45.56 0.42 0.26 16 LS Contribution 319.01 15.07 4.81 4.81 Total: 0.00 -4.71 319.01 -8.26 -12.97 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: -5.18 Total: -9.41 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.96 Total: -0.33 kcal Atomic # 8 Polarization: -1.93 SS G_CDS: -0.61 Total: -2.54 kcal Atomic # 14 Polarization: 0.82 SS G_CDS: -6.32 Total: -5.50 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -4.71 -8.26 -12.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26801_3095236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.111 kcal (2) G-P(sol) polarization free energy of solvation -4.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds