Wall clock time and date at job start Mon Mar 8 2021 15:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38519 * 120.06958 * 359.72831 * 3 2 1 5 5 C 1.38296 * 119.99696 * 179.74377 * 4 3 2 6 6 C 1.50701 * 119.92580 * 180.23141 * 5 4 3 7 7 O 1.42903 * 109.47261 * 300.27493 * 6 5 4 8 8 Si 1.86295 * 109.47147 * 180.27619 * 6 5 4 9 9 H 1.48505 * 109.47118 * 59.99881 * 8 6 5 10 10 H 1.48498 * 109.47234 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46989 * 300.00353 * 8 6 5 12 12 C 1.38203 * 120.14679 * 0.51103 * 5 4 3 13 13 C 1.38288 * 120.14554 * 359.76377 * 12 5 4 14 14 C 1.38522 * 119.99990 * 359.97438 * 13 12 5 15 15 O 1.35994 * 120.07549 * 179.97438 * 14 13 12 16 16 C 1.42901 * 116.99839 * 0.02908 * 15 14 13 17 17 O 1.42900 * 109.47398 * 74.99368 * 16 15 14 18 18 Si 1.63101 * 113.99757 * 180.02562 * 17 16 15 19 19 C 1.86296 * 109.47260 * 299.99899 * 18 17 16 20 20 C 1.86295 * 109.47074 * 60.00561 * 18 17 16 21 21 C 1.86305 * 109.46825 * 180.02562 * 18 17 16 22 22 C 1.53007 * 109.46830 * 60.00040 * 21 18 17 23 23 C 1.52997 * 109.47021 * 179.97438 * 21 18 17 24 24 C 1.52998 * 109.47191 * 300.00344 * 21 18 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 28 28 H 1.08002 * 120.00791 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.47150 * 60.27802 * 6 5 4 30 30 H 0.96692 * 114.00195 * 300.00172 * 7 6 5 31 31 H 1.07996 * 119.92818 * 179.74666 * 12 5 4 32 32 H 1.07992 * 120.00165 * 179.97438 * 13 12 5 33 33 H 1.09000 * 109.47348 * 194.99951 * 16 15 14 34 34 H 1.09005 * 109.46860 * 314.99335 * 16 15 14 35 35 H 1.09005 * 109.46627 * 60.00521 * 19 18 17 36 36 H 1.09006 * 109.46895 * 179.97438 * 19 18 17 37 37 H 1.08994 * 109.47357 * 300.00232 * 19 18 17 38 38 H 1.09002 * 109.47621 * 59.99461 * 20 18 17 39 39 H 1.09006 * 109.47535 * 179.97438 * 20 18 17 40 40 H 1.08996 * 109.47148 * 299.99536 * 20 18 17 41 41 H 1.09003 * 109.46685 * 60.00561 * 22 21 18 42 42 H 1.09000 * 109.46640 * 179.97438 * 22 21 18 43 43 H 1.08994 * 109.47435 * 299.99813 * 22 21 18 44 44 H 1.09001 * 109.47096 * 60.00558 * 23 21 18 45 45 H 1.09000 * 109.47134 * 179.97438 * 23 21 18 46 46 H 1.09002 * 109.47271 * 299.99916 * 23 21 18 47 47 H 1.08994 * 109.47331 * 60.00029 * 24 21 18 48 48 H 1.09000 * 109.47268 * 180.02562 * 24 21 18 49 49 H 1.09001 * 109.47244 * 299.99637 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2936 2.3743 -0.0057 5 6 1.9230 3.6057 -0.0003 6 6 1.1023 4.8696 -0.0012 7 8 0.2783 4.9017 -1.1683 8 14 2.2371 6.3470 -0.0016 9 1 3.0943 6.3125 -1.2138 10 1 1.4284 7.5925 -0.0019 11 1 3.0935 6.3137 1.2112 12 6 3.3031 3.6798 0.0001 13 6 4.0606 2.5229 0.0000 14 6 3.4364 1.2862 0.0001 15 8 4.1799 0.1475 -0.0005 16 6 5.6007 0.3005 -0.0005 17 8 6.0372 0.6977 1.3009 18 14 7.6502 0.9054 1.4249 19 6 8.5153 -0.6939 1.0194 20 6 8.1994 2.2281 0.2336 21 6 8.0782 1.4186 3.1640 22 6 7.6272 0.3318 4.1420 23 6 9.5913 1.6129 3.2805 24 6 7.3677 2.7318 3.4977 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2150 2.3193 -0.0105 29 1 0.4732 4.8950 0.8885 30 1 0.7723 4.8817 -1.9993 31 1 3.7909 4.6433 0.0001 32 1 5.1389 2.5835 -0.0001 33 1 6.0682 -0.6474 -0.2670 34 1 5.8841 1.0621 -0.7270 35 1 8.2648 -0.9945 0.0020 36 1 9.5933 -0.5549 1.1018 37 1 8.1939 -1.4677 1.7164 38 1 7.6932 3.1639 0.4708 39 1 9.2773 2.3673 0.3167 40 1 7.9490 1.9275 -0.7838 41 1 8.1335 -0.6037 3.9043 42 1 7.8780 0.6319 5.1594 43 1 6.5493 0.1930 4.0591 44 1 9.9130 2.3869 2.5838 45 1 9.8418 1.9136 4.2979 46 1 10.0972 0.6770 3.0430 47 1 6.2898 2.5930 3.4148 48 1 7.6185 3.0323 4.5150 49 1 7.6890 3.5061 2.8010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26802_14468166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:16:32 Heat of formation + Delta-G solvation = -173.168963 kcal Electronic energy + Delta-G solvation = -27425.088228 eV Core-core repulsion = 23669.693714 eV Total energy + Delta-G solvation = -3755.394514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72919 -39.84886 -38.91285 -37.29182 -36.85653 -36.62301 -31.86260 -31.37838 -29.46363 -29.09735 -28.50037 -27.85391 -27.41046 -27.25683 -25.87715 -23.31980 -22.46411 -20.48504 -19.76633 -18.64646 -18.36766 -18.19502 -17.48028 -16.77518 -16.42693 -16.15187 -16.07369 -15.90260 -15.87902 -15.13579 -14.93214 -14.87930 -14.77203 -14.61137 -14.32136 -14.03251 -13.81806 -13.51060 -13.49768 -13.38532 -13.20071 -12.98396 -12.93322 -12.81907 -12.63992 -12.54716 -12.41179 -12.19437 -12.06139 -12.00014 -11.92312 -11.80203 -11.61816 -11.59596 -11.44149 -10.43078 -10.40833 -10.09792 -9.75930 -8.92701 0.17885 0.27252 1.18953 1.33055 1.47773 1.54065 1.68295 1.92806 2.05505 2.15717 2.31690 2.50449 2.58859 3.50758 3.66828 3.75783 3.80592 3.97643 4.07867 4.10141 4.11383 4.19294 4.29009 4.37870 4.41726 4.43818 4.61852 4.65749 4.71730 4.72565 4.72836 4.76678 4.77115 4.80123 4.81680 4.98194 5.01267 5.05109 5.07578 5.07723 5.15634 5.24932 5.35115 5.36007 5.38555 5.44569 5.58177 5.59511 5.63714 5.99991 6.51636 6.71600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.083 3.917 4 C -0.149 4.149 5 C -0.117 4.117 6 C -0.076 4.076 7 O -0.551 6.551 8 Si 0.979 3.021 9 H -0.247 1.247 10 H -0.275 1.275 11 H -0.256 1.256 12 C -0.130 4.130 13 C -0.157 4.157 14 C 0.088 3.912 15 O -0.310 6.310 16 C 0.233 3.767 17 O -0.663 6.663 18 Si 1.315 2.685 19 C -0.519 4.519 20 C -0.518 4.518 21 C -0.382 4.382 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.137 4.137 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.150 0.850 29 H 0.124 0.876 30 H 0.389 0.611 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.047 0.953 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.185 1.185 -2.154 3.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.037 3.963 4 C -0.167 4.167 5 C -0.117 4.117 6 C -0.186 4.186 7 O -0.359 6.359 8 Si 0.803 3.197 9 H -0.171 1.171 10 H -0.200 1.200 11 H -0.180 1.180 12 C -0.148 4.148 13 C -0.175 4.175 14 C 0.043 3.957 15 O -0.225 6.225 16 C 0.121 3.879 17 O -0.624 6.624 18 Si 1.447 2.553 19 C -0.622 4.622 20 C -0.620 4.620 21 C -0.424 4.424 22 C -0.195 4.195 23 C -0.197 4.197 24 C -0.194 4.194 25 H 0.133 0.867 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.168 0.832 29 H 0.142 0.858 30 H 0.238 0.762 31 H 0.157 0.843 32 H 0.172 0.828 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.029 1.525 -1.557 2.978 hybrid contribution 0.466 -0.343 -0.065 0.583 sum 2.496 1.182 -1.622 3.203 Atomic orbital electron populations 1.23321 0.76615 1.05397 1.02195 1.86144 1.23111 1.26186 1.89067 1.18583 0.89557 0.85832 1.02324 1.21040 1.00826 0.90198 1.04656 1.20177 0.93770 0.95566 1.02235 1.25001 1.00483 1.00978 0.92163 1.86474 1.36397 1.96868 1.16115 0.85268 0.77187 0.75689 0.81540 1.17054 1.20006 1.18006 1.20966 0.93196 0.98624 1.01967 1.21215 1.01423 0.90281 1.04620 1.18511 0.88469 0.86742 1.02013 1.86323 1.19425 1.29041 1.87719 1.23865 0.78374 1.02406 0.83251 1.85325 1.54236 1.86476 1.36342 0.76161 0.49282 0.65136 0.64722 1.27090 1.10042 1.19258 1.05764 1.27050 1.07714 1.14698 1.12574 1.25919 0.99389 0.99411 1.17690 1.21544 1.00827 0.98144 0.98967 1.21603 0.93533 1.02317 1.02296 1.21545 0.99883 0.96347 1.01673 0.86734 0.91600 0.91868 0.83196 0.85802 0.76170 0.84254 0.82808 0.85377 0.89832 0.90514 0.89868 0.91259 0.90577 0.89625 0.90375 0.92000 0.93315 0.93134 0.91402 0.93191 0.91709 0.93024 0.93380 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.12 16 2 O -0.33 -2.87 10.28 -79.61 -0.82 -3.69 16 3 C 0.08 0.66 6.70 22.57 0.15 0.81 16 4 C -0.15 -0.59 8.59 22.35 0.19 -0.40 16 5 C -0.12 -0.23 5.39 -19.86 -0.11 -0.34 16 6 C -0.08 0.07 2.82 71.24 0.20 0.27 16 7 O -0.55 0.08 12.76 -148.98 -1.90 -1.83 16 8 Si 0.98 -1.54 25.06 68.60 1.72 0.18 16 9 H -0.25 0.54 7.11 99.48 0.71 1.25 16 10 H -0.27 -0.51 7.11 99.48 0.71 0.20 16 11 H -0.26 0.14 7.11 99.48 0.71 0.84 16 12 C -0.13 -0.23 8.66 22.27 0.19 -0.03 16 13 C -0.16 -0.52 8.78 22.35 0.20 -0.33 16 14 C 0.09 0.68 6.64 22.57 0.15 0.83 16 15 O -0.31 -2.50 10.18 -65.24 -0.66 -3.16 16 16 C 0.23 0.01 5.42 113.37 0.61 0.62 16 17 O -0.66 -0.86 8.04 -126.21 -1.01 -1.87 16 18 Si 1.32 -4.87 8.45 68.60 0.58 -4.29 16 19 C -0.52 1.86 8.50 113.37 0.96 2.82 16 20 C -0.52 2.77 8.50 113.37 0.96 3.74 16 21 C -0.38 0.35 0.53 -10.79 -0.01 0.35 16 22 C -0.14 -0.18 7.85 71.98 0.56 0.39 16 23 C -0.14 0.33 7.85 71.98 0.56 0.90 16 24 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 25 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.07 -0.13 7.65 -2.39 -0.02 -0.15 16 27 H 0.06 -0.10 7.68 -2.38 -0.02 -0.12 16 28 H 0.15 0.17 6.30 -2.91 -0.02 0.15 16 29 H 0.12 -0.30 7.96 -2.39 -0.02 -0.32 16 30 H 0.39 -2.49 8.70 -74.06 -0.64 -3.14 16 31 H 0.14 -0.29 4.86 -2.91 -0.01 -0.30 16 32 H 0.15 -0.17 5.85 -2.91 -0.02 -0.18 16 33 H 0.13 -0.64 7.21 -2.39 -0.02 -0.66 16 34 H 0.08 -0.44 5.77 -2.38 -0.01 -0.45 16 35 H 0.08 -0.41 7.48 -2.38 -0.02 -0.42 16 36 H 0.08 -0.38 7.79 -2.38 -0.02 -0.40 16 37 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 38 H 0.08 -0.39 7.79 -2.39 -0.02 -0.41 16 39 H 0.08 -0.52 7.79 -2.38 -0.02 -0.54 16 40 H 0.08 -0.55 7.48 -2.39 -0.02 -0.57 16 41 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 42 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.05 0.16 7.96 -2.39 -0.02 0.14 16 44 H 0.07 -0.31 7.79 -2.39 -0.02 -0.33 16 45 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 47 H 0.05 0.10 7.96 -2.39 -0.02 0.08 16 48 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.07 -0.15 7.80 -2.39 -0.02 -0.17 16 Total: 0.00 -14.92 387.78 5.26 -9.66 By element: Atomic # 1 Polarization: -7.31 SS G_CDS: 1.04 Total: -6.27 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.32 Total: 11.26 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -4.40 Total: -10.55 kcal Atomic # 14 Polarization: -6.41 SS G_CDS: 2.30 Total: -4.11 kcal Total: -14.92 5.26 -9.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26802_14468166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.507 kcal (2) G-P(sol) polarization free energy of solvation -14.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds