Wall clock time and date at job start Mon Mar 8 2021 15:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35991 * 117.00277 * 2 1 4 4 C 1.38524 * 120.07188 * 0.02562 * 3 2 1 5 5 C 1.38283 * 120.00154 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.92990 * 180.02562 * 5 4 3 7 7 O 1.42906 * 109.47232 * 300.00157 * 6 5 4 8 8 Si 1.86296 * 109.47448 * 180.02562 * 6 5 4 9 9 H 1.48498 * 109.47337 * 59.99660 * 8 6 5 10 10 H 1.48500 * 109.47424 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46866 * 299.99755 * 8 6 5 12 12 C 1.38209 * 120.14728 * 359.97438 * 5 4 3 13 13 C 1.38292 * 120.14470 * 359.75951 * 12 5 4 14 14 C 1.38527 * 119.99589 * 0.51439 * 13 12 5 15 15 O 1.35991 * 120.06831 * 179.74377 * 14 13 12 16 16 C 1.42898 * 117.00422 * 353.81628 * 15 14 13 17 17 Si 1.86298 * 109.47016 * 282.28991 * 16 15 14 18 18 C 1.86298 * 109.47042 * 66.68458 * 17 16 15 19 19 C 1.86304 * 109.47039 * 186.68282 * 17 16 15 20 20 C 1.86302 * 109.47252 * 306.68263 * 17 16 15 21 21 H 1.09001 * 109.47610 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47155 * 300.00154 * 1 2 3 23 23 H 1.09000 * 109.47055 * 59.99663 * 1 2 3 24 24 H 1.07998 * 120.00035 * 359.95974 * 4 3 2 25 25 H 1.08995 * 109.47497 * 60.00101 * 6 5 4 26 26 H 0.96701 * 114.00116 * 300.00126 * 7 6 5 27 27 H 1.07993 * 119.93205 * 180.02562 * 12 5 4 28 28 H 1.08002 * 120.00332 * 180.25506 * 13 12 5 29 29 H 1.09000 * 109.46770 * 42.29204 * 16 15 14 30 30 H 1.09003 * 109.47064 * 162.28812 * 16 15 14 31 31 H 1.09003 * 109.47577 * 55.84140 * 18 17 16 32 32 H 1.08999 * 109.46920 * 175.84366 * 18 17 16 33 33 H 1.08997 * 109.47306 * 295.84667 * 18 17 16 34 34 H 1.08996 * 109.47108 * 59.99548 * 19 17 16 35 35 H 1.09001 * 109.46913 * 180.02562 * 19 17 16 36 36 H 1.09000 * 109.47000 * 299.99881 * 19 17 16 37 37 H 1.08997 * 109.46842 * 65.00581 * 20 17 16 38 38 H 1.09001 * 109.46956 * 185.00063 * 20 17 16 39 39 H 1.08993 * 109.47029 * 305.00295 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2935 2.3744 0.0005 5 6 1.9228 3.6057 0.0011 6 6 1.1021 4.8696 0.0022 7 8 0.2772 4.9030 -1.1642 8 14 2.2370 6.3470 0.0019 9 1 3.0928 6.3136 -1.2112 10 1 1.4282 7.5925 0.0037 11 1 3.0946 6.3126 1.2138 12 6 3.3029 3.6798 0.0016 13 6 4.0605 2.5229 0.0066 14 6 3.4363 1.2863 0.0004 15 8 4.1799 0.1477 0.0000 16 6 5.5951 0.2969 -0.1308 17 14 6.0215 0.6371 -1.9122 18 6 5.3474 2.3024 -2.4050 19 6 7.8729 0.6304 -2.1197 20 6 5.2707 -0.6815 -2.9932 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2149 2.3193 0.0003 25 1 0.4737 4.8940 0.8924 26 1 0.7706 4.8840 -1.9956 27 1 3.7908 4.6433 0.0024 28 1 5.1389 2.5835 0.0112 29 1 5.9314 1.1284 0.4885 30 1 6.0885 -0.6197 0.1923 31 1 5.7294 3.0646 -1.7258 32 1 5.6596 2.5338 -3.4234 33 1 4.2588 2.2833 -2.3542 34 1 8.2673 -0.3439 -1.8313 35 1 8.1224 0.8298 -3.1619 36 1 8.3122 1.4019 -1.4873 37 1 4.1838 -0.6194 -2.9400 38 1 5.5931 -0.5334 -4.0238 39 1 5.5959 -1.6629 -2.6482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26802_3095236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:20:51 Heat of formation + Delta-G solvation = -109.372994 kcal Electronic energy + Delta-G solvation = -19684.452351 eV Core-core repulsion = 16717.119286 eV Total energy + Delta-G solvation = -2967.333065 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.125 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.64219 -39.38328 -38.82936 -36.89137 -31.92487 -31.54414 -29.71687 -28.61862 -28.49331 -28.33330 -27.79467 -25.98115 -23.17786 -22.33026 -19.56331 -18.34431 -18.13478 -17.27271 -17.02088 -16.18631 -16.08924 -15.99145 -15.83568 -15.61914 -14.95873 -14.37250 -14.20763 -14.03002 -13.90266 -13.76637 -13.62532 -13.38440 -13.28562 -13.14148 -13.01893 -12.86065 -12.57052 -12.28028 -12.19663 -12.01817 -11.94117 -11.53461 -10.97986 -10.87738 -10.71933 -10.41483 -9.58564 -8.65425 0.27420 0.36978 1.14783 1.42765 1.45557 1.50398 1.66316 1.72038 1.90294 2.35290 2.45417 2.47710 2.67777 3.44546 3.68284 3.83668 3.93898 4.10353 4.19199 4.29938 4.35869 4.44187 4.57940 4.59334 4.61502 4.62835 4.63248 4.65453 4.71881 4.76422 4.78526 4.81341 5.09323 5.21046 5.37241 5.44349 5.49463 5.56220 5.65314 6.12337 6.53749 6.64161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.099 3.901 4 C -0.146 4.146 5 C -0.119 4.119 6 C -0.077 4.077 7 O -0.539 6.539 8 Si 0.949 3.051 9 H -0.250 1.250 10 H -0.255 1.255 11 H -0.250 1.250 12 C -0.124 4.124 13 C -0.165 4.165 14 C 0.100 3.900 15 O -0.281 6.281 16 C -0.246 4.246 17 Si 0.986 3.014 18 C -0.450 4.450 19 C -0.447 4.447 20 C -0.442 4.442 21 H 0.101 0.899 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.140 0.860 25 H 0.117 0.883 26 H 0.377 0.623 27 H 0.124 0.876 28 H 0.143 0.857 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 0.803 -0.719 1.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.054 3.946 4 C -0.165 4.165 5 C -0.119 4.119 6 C -0.187 4.187 7 O -0.344 6.344 8 Si 0.772 3.228 9 H -0.173 1.173 10 H -0.179 1.179 11 H -0.174 1.174 12 C -0.142 4.142 13 C -0.184 4.184 14 C 0.054 3.946 15 O -0.194 6.194 16 C -0.367 4.367 17 Si 1.183 2.817 18 C -0.558 4.558 19 C -0.555 4.555 20 C -0.550 4.550 21 H 0.120 0.880 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.158 0.842 25 H 0.135 0.865 26 H 0.224 0.776 27 H 0.141 0.859 28 H 0.161 0.839 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.445 1.128 -0.204 1.844 hybrid contribution 0.138 -0.210 -0.231 0.341 sum 1.583 0.918 -0.436 1.881 Atomic orbital electron populations 1.23112 0.78248 1.04228 1.01437 1.86189 1.21232 1.25614 1.88844 1.18282 0.89126 0.85398 1.01817 1.20889 1.00329 0.90387 1.04895 1.19954 0.93495 0.95261 1.03216 1.24928 1.00340 1.01595 0.91879 1.86504 1.35652 1.96932 1.15353 0.85698 0.78035 0.77236 0.81866 1.17347 1.17885 1.17414 1.20697 0.93040 0.98052 1.02392 1.21089 1.00813 0.90836 1.05630 1.18295 0.88389 0.86489 1.01423 1.86145 1.17874 1.27425 1.87929 1.28185 0.81706 1.06950 1.19849 0.79878 0.67538 0.68483 0.65820 1.26459 1.07140 1.16362 1.05798 1.26061 1.19661 1.04705 1.05119 1.25988 1.07522 1.12151 1.09352 0.88024 0.92595 0.92477 0.84199 0.86488 0.77639 0.85869 0.83907 0.91115 0.87336 0.90974 0.90996 0.90597 0.90968 0.90711 0.91069 0.90872 0.91196 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.31 -1.06 10.28 -34.19 -0.35 -1.41 16 3 C 0.10 0.31 6.70 -39.12 -0.26 0.04 16 4 C -0.15 -0.23 8.60 -39.46 -0.34 -0.56 16 5 C -0.12 -0.10 5.39 -104.62 -0.56 -0.66 16 6 C -0.08 0.03 2.82 36.00 0.10 0.13 16 7 O -0.54 -0.11 12.77 -35.23 -0.45 -0.56 16 8 Si 0.95 -0.52 25.06 -169.99 -4.26 -4.78 16 9 H -0.25 0.12 7.11 56.52 0.40 0.52 16 10 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 11 H -0.25 0.01 7.11 56.52 0.40 0.41 16 12 C -0.12 -0.08 8.66 -39.57 -0.34 -0.42 16 13 C -0.17 -0.14 5.62 -39.45 -0.22 -0.36 16 14 C 0.10 0.27 5.80 -39.12 -0.23 0.04 16 15 O -0.28 -0.82 9.58 -34.19 -0.33 -1.15 16 16 C -0.25 0.14 5.31 101.05 0.54 0.68 16 17 Si 0.99 -2.11 11.67 -169.99 -1.98 -4.10 16 18 C -0.45 0.60 7.03 101.05 0.71 1.31 16 19 C -0.45 0.94 8.65 101.05 0.87 1.82 16 20 C -0.44 0.12 8.65 101.05 0.87 0.99 16 21 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 22 H 0.06 -0.07 7.66 -51.93 -0.40 -0.46 16 23 H 0.06 -0.07 7.66 -51.93 -0.40 -0.47 16 24 H 0.14 0.05 6.30 -52.49 -0.33 -0.28 16 25 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 26 H 0.38 -1.06 8.70 45.56 0.40 -0.66 16 27 H 0.12 -0.11 4.86 -52.49 -0.26 -0.36 16 28 H 0.14 -0.20 4.23 -52.49 -0.22 -0.42 16 29 H 0.07 -0.13 6.08 -51.93 -0.32 -0.44 16 30 H 0.11 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.15 6.52 -51.93 -0.34 -0.49 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 -0.01 6.50 -51.93 -0.34 -0.34 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 36 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 37 H 0.07 0.07 7.96 -51.93 -0.41 -0.34 16 38 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 39 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 LS Contribution 312.06 15.07 4.70 4.70 Total: 0.00 -5.66 312.06 -5.68 -11.34 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -5.14 Total: -8.04 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 2.13 Total: 3.99 kcal Atomic # 8 Polarization: -1.99 SS G_CDS: -1.13 Total: -3.12 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: -6.24 Total: -8.88 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -5.66 -5.68 -11.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26802_3095236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.030 kcal (2) G-P(sol) polarization free energy of solvation -5.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds