Wall clock time and date at job start Mon Mar 8 2021 15:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35991 * 117.00277 * 2 1 4 4 C 1.38524 * 120.07188 * 0.02562 * 3 2 1 5 5 C 1.38283 * 120.00154 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.92990 * 180.02562 * 5 4 3 7 7 O 1.42906 * 109.47232 * 300.00157 * 6 5 4 8 8 Si 1.86296 * 109.47448 * 180.02562 * 6 5 4 9 9 H 1.48498 * 109.47337 * 59.99660 * 8 6 5 10 10 H 1.48500 * 109.47424 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46866 * 299.99755 * 8 6 5 12 12 C 1.38209 * 120.14728 * 359.97438 * 5 4 3 13 13 C 1.38292 * 120.14470 * 359.75951 * 12 5 4 14 14 C 1.38527 * 119.99589 * 0.51439 * 13 12 5 15 15 O 1.35991 * 120.06831 * 179.74377 * 14 13 12 16 16 C 1.42898 * 117.00422 * 353.81628 * 15 14 13 17 17 Si 1.86298 * 109.47016 * 282.28991 * 16 15 14 18 18 C 1.86298 * 109.47042 * 66.68458 * 17 16 15 19 19 C 1.86304 * 109.47039 * 186.68282 * 17 16 15 20 20 C 1.86302 * 109.47252 * 306.68263 * 17 16 15 21 21 H 1.09001 * 109.47610 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47155 * 300.00154 * 1 2 3 23 23 H 1.09000 * 109.47055 * 59.99663 * 1 2 3 24 24 H 1.07998 * 120.00035 * 359.95974 * 4 3 2 25 25 H 1.08995 * 109.47497 * 60.00101 * 6 5 4 26 26 H 0.96701 * 114.00116 * 300.00126 * 7 6 5 27 27 H 1.07993 * 119.93205 * 180.02562 * 12 5 4 28 28 H 1.08002 * 120.00332 * 180.25506 * 13 12 5 29 29 H 1.09000 * 109.46770 * 42.29204 * 16 15 14 30 30 H 1.09003 * 109.47064 * 162.28812 * 16 15 14 31 31 H 1.09003 * 109.47577 * 55.84140 * 18 17 16 32 32 H 1.08999 * 109.46920 * 175.84366 * 18 17 16 33 33 H 1.08997 * 109.47306 * 295.84667 * 18 17 16 34 34 H 1.08996 * 109.47108 * 59.99548 * 19 17 16 35 35 H 1.09001 * 109.46913 * 180.02562 * 19 17 16 36 36 H 1.09000 * 109.47000 * 299.99881 * 19 17 16 37 37 H 1.08997 * 109.46842 * 65.00581 * 20 17 16 38 38 H 1.09001 * 109.46956 * 185.00063 * 20 17 16 39 39 H 1.08993 * 109.47029 * 305.00295 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2935 2.3744 0.0005 5 6 1.9228 3.6057 0.0011 6 6 1.1021 4.8696 0.0022 7 8 0.2772 4.9030 -1.1642 8 14 2.2370 6.3470 0.0019 9 1 3.0928 6.3136 -1.2112 10 1 1.4282 7.5925 0.0037 11 1 3.0946 6.3126 1.2138 12 6 3.3029 3.6798 0.0016 13 6 4.0605 2.5229 0.0066 14 6 3.4363 1.2863 0.0004 15 8 4.1799 0.1477 0.0000 16 6 5.5951 0.2969 -0.1308 17 14 6.0215 0.6371 -1.9122 18 6 5.3474 2.3024 -2.4050 19 6 7.8729 0.6304 -2.1197 20 6 5.2707 -0.6815 -2.9932 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2149 2.3193 0.0003 25 1 0.4737 4.8940 0.8924 26 1 0.7706 4.8840 -1.9956 27 1 3.7908 4.6433 0.0024 28 1 5.1389 2.5835 0.0112 29 1 5.9314 1.1284 0.4885 30 1 6.0885 -0.6197 0.1923 31 1 5.7294 3.0646 -1.7258 32 1 5.6596 2.5338 -3.4234 33 1 4.2588 2.2833 -2.3542 34 1 8.2673 -0.3439 -1.8313 35 1 8.1224 0.8298 -3.1619 36 1 8.3122 1.4019 -1.4873 37 1 4.1838 -0.6194 -2.9400 38 1 5.5931 -0.5334 -4.0238 39 1 5.5959 -1.6629 -2.6482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26802_3095236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:20:51 Heat of formation + Delta-G solvation = -103.945268 kcal Electronic energy + Delta-G solvation = -19684.216987 eV Core-core repulsion = 16717.119286 eV Total energy + Delta-G solvation = -2967.097701 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.125 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.69810 -39.45849 -38.85859 -36.90341 -31.95221 -31.58323 -29.61257 -28.60704 -28.37064 -28.24691 -27.73859 -25.97611 -23.22209 -22.36847 -19.61133 -18.35732 -18.18405 -17.30992 -17.07853 -16.19710 -16.07620 -16.01828 -15.83688 -15.59567 -14.94671 -14.33549 -14.13992 -13.90445 -13.84822 -13.71695 -13.58209 -13.29985 -13.18850 -13.05842 -12.93470 -12.85487 -12.56241 -12.25636 -12.17107 -12.01550 -11.96307 -11.53007 -10.84130 -10.78602 -10.66882 -10.38376 -9.63656 -8.72927 0.21796 0.29649 1.19373 1.48318 1.53588 1.58446 1.81206 1.87076 1.92986 2.33380 2.48946 2.56112 2.63819 3.51578 3.69745 3.83941 3.94988 4.13664 4.25318 4.33705 4.35958 4.45233 4.61137 4.64786 4.71085 4.73490 4.75741 4.78289 4.82441 4.83922 4.85074 4.90388 5.05764 5.16451 5.39165 5.52116 5.60568 5.62215 5.65598 6.09194 6.59221 6.70603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.076 3.924 4 C -0.150 4.150 5 C -0.121 4.121 6 C -0.077 4.077 7 O -0.553 6.553 8 Si 0.980 3.020 9 H -0.247 1.247 10 H -0.277 1.277 11 H -0.254 1.254 12 C -0.128 4.128 13 C -0.164 4.164 14 C 0.084 3.916 15 O -0.305 6.305 16 C -0.268 4.268 17 Si 1.051 2.949 18 C -0.462 4.462 19 C -0.452 4.452 20 C -0.464 4.464 21 H 0.113 0.887 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.147 0.853 25 H 0.123 0.877 26 H 0.388 0.612 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 1.648 -0.705 2.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.031 3.969 4 C -0.169 4.169 5 C -0.121 4.121 6 C -0.187 4.187 7 O -0.360 6.360 8 Si 0.804 3.196 9 H -0.170 1.170 10 H -0.202 1.202 11 H -0.178 1.178 12 C -0.146 4.146 13 C -0.182 4.182 14 C 0.038 3.962 15 O -0.219 6.219 16 C -0.386 4.386 17 Si 1.244 2.756 18 C -0.569 4.569 19 C -0.560 4.560 20 C -0.569 4.569 21 H 0.132 0.868 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.164 0.836 25 H 0.141 0.859 26 H 0.237 0.763 27 H 0.157 0.843 28 H 0.182 0.818 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.320 1.950 -0.203 3.037 hybrid contribution -0.171 -0.494 -0.248 0.578 sum 2.149 1.456 -0.450 2.634 Atomic orbital electron populations 1.23300 0.76828 1.05289 1.02124 1.86141 1.22922 1.26344 1.89165 1.18598 0.89744 0.85681 1.02896 1.21006 1.00687 0.90336 1.04838 1.20132 0.93873 0.95384 1.02740 1.25011 1.00460 1.01171 0.92055 1.86473 1.36461 1.96891 1.16149 0.85256 0.77173 0.75569 0.81597 1.17032 1.20235 1.17834 1.20948 0.93082 0.98708 1.01887 1.21347 1.01937 0.90200 1.04729 1.18542 0.88524 0.87087 1.02093 1.86105 1.19462 1.28094 1.88193 1.28586 0.80249 1.07963 1.21850 0.78901 0.66869 0.66476 0.63381 1.26582 1.06352 1.17471 1.06464 1.26091 1.19295 1.05186 1.05430 1.26286 1.06608 1.13497 1.10552 0.86844 0.91852 0.91792 0.83558 0.85932 0.76257 0.84263 0.81836 0.89787 0.86638 0.89796 0.90596 0.91925 0.90795 0.90594 0.90153 0.92676 0.90899 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.12 16 2 O -0.33 -2.89 10.28 -79.61 -0.82 -3.70 16 3 C 0.08 0.57 6.70 22.57 0.15 0.72 16 4 C -0.15 -0.58 8.60 22.35 0.19 -0.38 16 5 C -0.12 -0.20 5.39 -19.86 -0.11 -0.30 16 6 C -0.08 0.07 2.82 71.23 0.20 0.27 16 7 O -0.55 -0.13 12.77 -148.98 -1.90 -2.03 16 8 Si 0.98 -1.69 25.06 68.60 1.72 0.03 16 9 H -0.25 0.56 7.11 99.48 0.71 1.27 16 10 H -0.28 -0.54 7.11 99.48 0.71 0.16 16 11 H -0.25 0.27 7.11 99.48 0.71 0.98 16 12 C -0.13 -0.09 8.66 22.28 0.19 0.10 16 13 C -0.16 -0.24 5.62 22.35 0.13 -0.12 16 14 C 0.08 0.53 5.80 22.57 0.13 0.66 16 15 O -0.30 -2.14 9.58 -79.61 -0.76 -2.90 16 16 C -0.27 0.29 5.31 113.37 0.60 0.90 16 17 Si 1.05 -4.71 11.67 68.60 0.80 -3.91 16 18 C -0.46 1.47 7.03 113.37 0.80 2.27 16 19 C -0.45 2.45 8.65 113.37 0.98 3.43 16 20 C -0.46 -0.30 8.65 113.37 0.98 0.68 16 21 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 22 H 0.06 -0.09 7.66 -2.39 -0.02 -0.11 16 23 H 0.06 -0.09 7.66 -2.39 -0.02 -0.10 16 24 H 0.15 0.22 6.30 -2.91 -0.02 0.20 16 25 H 0.12 -0.30 7.96 -2.39 -0.02 -0.31 16 26 H 0.39 -2.26 8.70 -74.06 -0.64 -2.91 16 27 H 0.14 -0.43 4.86 -2.91 -0.01 -0.44 16 28 H 0.16 -0.64 4.23 -2.91 -0.01 -0.66 16 29 H 0.08 -0.36 6.08 -2.39 -0.01 -0.38 16 30 H 0.12 -0.36 7.96 -2.39 -0.02 -0.38 16 31 H 0.08 -0.47 6.52 -2.39 -0.02 -0.49 16 32 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 33 H 0.06 0.01 6.50 -2.39 -0.02 -0.01 16 34 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 35 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 36 H 0.08 -0.55 7.96 -2.39 -0.02 -0.56 16 37 H 0.05 0.23 7.96 -2.39 -0.02 0.21 16 38 H 0.07 -0.04 7.96 -2.39 -0.02 -0.05 16 39 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 Total: 0.00 -13.73 312.06 5.56 -8.17 By element: Atomic # 1 Polarization: -6.16 SS G_CDS: 1.16 Total: -5.00 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.36 Total: 9.36 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -3.48 Total: -8.64 kcal Atomic # 14 Polarization: -6.41 SS G_CDS: 2.52 Total: -3.89 kcal Total: -13.73 5.56 -8.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26802_3095236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.773 kcal (2) G-P(sol) polarization free energy of solvation -13.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds