Wall clock time and date at job start Mon Mar 8 2021 14:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.46792 * 2 1 4 4 C 1.50695 * 109.47465 * 239.99818 * 2 1 3 5 5 C 1.38707 * 120.02496 * 285.30116 * 4 2 1 6 6 O 1.35911 * 120.04707 * 359.97438 * 5 4 2 7 7 C 1.42901 * 117.00234 * 180.31862 * 6 5 4 8 8 C 1.53000 * 109.46989 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.46881 * 180.02562 * 8 7 6 10 10 O 1.42965 * 109.47034 * 299.99784 * 8 7 6 11 11 C 1.43092 * 113.76818 * 178.79534 * 10 8 7 12 12 C 1.53260 * 108.94333 * 302.03506 * 11 10 8 13 13 H 1.08996 * 109.57396 * 294.71269 * 12 11 10 14 14 N 1.46504 * 109.57238 * 174.46153 * 12 11 10 15 15 C 1.34523 * 124.46007 * 299.69139 * 14 12 11 16 16 O 1.21441 * 125.70953 * 0.02562 * 15 14 12 17 17 C 1.47819 * 108.58040 * 179.90957 * 15 14 12 18 18 C 1.40946 * 105.87803 * 0.35039 * 17 15 14 19 19 C 1.38562 * 119.81827 * 179.82794 * 18 17 15 20 20 C 1.38607 * 119.72200 * 359.93368 * 19 18 17 21 21 C 1.38225 * 120.45941 * 0.07011 * 20 19 18 22 22 C 1.38565 * 134.29952 * 180.10250 * 17 15 14 23 23 C 1.34527 * 124.45951 * 120.00035 * 14 12 11 24 24 O 1.21449 * 125.70800 * 359.97438 * 23 14 12 25 25 C 1.53262 * 108.84745 * 54.52107 * 12 11 10 26 26 O 1.42962 * 109.47241 * 60.00431 * 8 7 6 27 27 C 1.38746 * 119.90701 * 180.31908 * 5 4 2 28 28 C 1.38126 * 119.95501 * 359.39690 * 27 5 4 29 29 C 1.38364 * 120.04554 * 0.28436 * 28 27 5 30 30 Br 1.89097 * 119.95709 * 179.97438 * 29 28 27 31 31 C 1.38166 * 120.02285 * 104.99522 * 4 2 1 32 32 H 0.96698 * 114.00335 * 60.00129 * 1 2 3 33 33 H 1.08998 * 109.46858 * 119.99414 * 2 1 3 34 34 H 1.48498 * 109.99870 * 298.67933 * 3 2 1 35 35 H 1.48499 * 110.00050 * 59.99759 * 3 2 1 36 36 H 1.09002 * 109.46990 * 300.00357 * 7 6 5 37 37 H 1.08996 * 109.46977 * 60.00226 * 7 6 5 38 38 H 1.09004 * 109.55946 * 61.87246 * 11 10 8 39 39 H 1.08994 * 109.55905 * 182.08414 * 11 10 8 40 40 H 1.08005 * 120.14207 * 179.97438 * 19 18 17 41 41 H 1.08001 * 119.77176 * 180.02562 * 20 19 18 42 42 H 1.08004 * 119.77476 * 179.97438 * 21 20 19 43 43 H 1.08006 * 120.13936 * 0.29250 * 22 17 15 44 44 H 1.09006 * 109.55247 * 65.31773 * 25 12 11 45 45 H 1.08995 * 109.55562 * 185.52955 * 25 12 11 46 46 H 1.08002 * 120.02503 * 179.68036 * 27 5 4 47 47 H 1.08000 * 119.97818 * 180.29901 * 28 27 5 48 48 H 1.08009 * 119.97353 * 0.02562 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.8640 -2.0936 -1.3093 6 8 1.3453 -2.8097 -0.2771 7 6 1.3138 -4.2307 -0.4246 8 6 0.7004 -4.8598 0.8280 9 1 0.6767 -5.9438 0.7157 10 8 1.4900 -4.5166 1.9692 11 6 0.9808 -5.0377 3.2008 12 6 -0.4487 -4.5242 3.4051 13 1 -0.4329 -3.4422 3.5354 14 7 -1.0310 -5.1532 4.5932 15 6 -1.2037 -6.4786 4.7455 16 8 -0.9058 -7.3302 3.9326 17 6 -1.8141 -6.7250 6.0690 18 6 -1.9855 -5.4556 6.6570 19 6 -2.5471 -5.3511 7.9194 20 6 -2.9379 -6.4968 8.5946 21 6 -2.7698 -7.7417 8.0180 22 6 -2.2088 -7.8617 6.7561 23 6 -1.4688 -4.4810 5.6731 24 8 -1.4439 -3.2751 5.8156 25 6 -1.2840 -4.8806 2.1705 26 8 -0.6309 -4.3694 1.0045 27 6 2.3333 -2.7456 -2.4405 28 6 2.8551 -2.0157 -3.4907 29 6 2.9154 -0.6356 -3.4127 30 35 3.6309 0.3612 -4.8515 31 6 2.4537 0.0160 -2.2832 32 1 -0.3934 0.4417 -0.7650 33 1 1.7922 -0.5137 0.8900 34 1 1.5878 2.4585 -1.2242 35 1 1.5613 2.4680 1.2085 36 1 0.7114 -4.4924 -1.2945 37 1 2.3287 -4.6046 -0.5596 38 1 0.9751 -6.1270 3.1615 39 1 1.6110 -4.7057 4.0258 40 1 -2.6805 -4.3811 8.3751 41 1 -3.3761 -6.4163 9.5784 42 1 -3.0778 -8.6272 8.5542 43 1 -2.0796 -8.8370 6.3105 44 1 -1.3755 -5.9640 2.0922 45 1 -2.2752 -4.4362 2.2599 46 1 2.2865 -3.8229 -2.5019 47 1 3.2162 -2.5225 -4.3734 48 1 2.5021 1.0934 -2.2240 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26869_13594088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:34:02 Heat of formation + Delta-G solvation = -109.917004 kcal Electronic energy + Delta-G solvation = -39653.830642 eV Core-core repulsion = 34268.505857 eV Total energy + Delta-G solvation = -5385.324785 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 476.044 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.73838 -41.71776 -41.10031 -39.98701 -39.52711 -38.80961 -37.75735 -37.24251 -37.10133 -34.60404 -33.23194 -32.64899 -32.18682 -31.70215 -30.16775 -29.30411 -27.52658 -26.88938 -26.38120 -25.57407 -24.61230 -23.51525 -22.99832 -22.56489 -22.27355 -21.04083 -19.64696 -19.15839 -19.00469 -18.81204 -18.29473 -17.79700 -17.68858 -17.46894 -17.07299 -16.97629 -16.79134 -16.56232 -16.25701 -16.17629 -15.97108 -15.83671 -15.75071 -15.51331 -15.36209 -15.17483 -15.09127 -14.81339 -14.80353 -14.62645 -14.19710 -14.09236 -13.82818 -13.58346 -13.30802 -13.24432 -12.77775 -12.73890 -12.70085 -12.62561 -12.35260 -12.24652 -12.08094 -11.79675 -11.73052 -11.65910 -11.34752 -11.27760 -10.98284 -10.88802 -10.60852 -10.28234 -10.26934 -10.20889 -9.23018 -5.00411 -1.14227 -0.08369 0.01504 0.03361 0.62240 0.84413 0.85941 1.22368 1.49522 1.58547 1.87055 1.95746 2.17706 2.27654 2.38106 2.41853 2.54949 3.03982 3.12346 3.19560 3.35548 3.43285 3.50945 3.53769 3.64221 3.66947 3.79808 3.88493 3.94227 4.00990 4.02073 4.06869 4.12394 4.12630 4.13752 4.18908 4.24143 4.28153 4.38974 4.42793 4.47692 4.51333 4.62866 4.78297 4.85479 4.90053 5.03718 5.08092 5.16231 5.22947 5.31280 5.36583 5.46238 5.63324 5.71946 5.89015 6.22146 6.31211 6.47986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.070 4.070 3 Si 0.762 3.238 4 C -0.153 4.153 5 C 0.160 3.840 6 O -0.301 6.301 7 C 0.066 3.934 8 C 0.237 3.763 9 H 0.108 0.892 10 O -0.384 6.384 11 C 0.054 3.946 12 C 0.076 3.924 13 H 0.110 0.890 14 N -0.569 5.569 15 C 0.577 3.423 16 O -0.479 6.479 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.045 4.045 20 C -0.083 4.083 21 C -0.083 4.083 22 C -0.041 4.041 23 C 0.574 3.426 24 O -0.491 6.491 25 C 0.053 3.947 26 O -0.385 6.385 27 C -0.202 4.202 28 C -0.041 4.041 29 C -0.136 4.136 30 Br -0.049 7.049 31 C -0.057 4.057 32 H 0.382 0.618 33 H 0.109 0.891 34 H -0.268 1.268 35 H -0.299 1.299 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.152 0.848 41 H 0.176 0.824 42 H 0.178 0.822 43 H 0.158 0.842 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.164 0.836 47 H 0.157 0.843 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -7.864 4.252 8.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.179 4.179 3 Si 0.666 3.334 4 C -0.155 4.155 5 C 0.113 3.887 6 O -0.214 6.214 7 C -0.008 4.008 8 C 0.142 3.858 9 H 0.125 0.875 10 O -0.303 6.303 11 C -0.024 4.024 12 C -0.026 4.026 13 H 0.128 0.872 14 N -0.314 5.314 15 C 0.368 3.632 16 O -0.352 6.352 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.064 4.064 20 C -0.101 4.101 21 C -0.101 4.101 22 C -0.060 4.060 23 C 0.365 3.635 24 O -0.364 6.364 25 C -0.024 4.024 26 O -0.304 6.304 27 C -0.222 4.222 28 C -0.060 4.060 29 C -0.216 4.216 30 Br 0.036 6.964 31 C -0.077 4.077 32 H 0.230 0.770 33 H 0.127 0.873 34 H -0.194 1.194 35 H -0.227 1.227 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.170 0.830 41 H 0.194 0.806 42 H 0.195 0.805 43 H 0.175 0.825 44 H 0.096 0.904 45 H 0.125 0.875 46 H 0.182 0.818 47 H 0.174 0.826 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.061 -6.440 3.821 7.489 hybrid contribution -1.303 -0.391 -0.283 1.389 sum -1.363 -6.831 3.538 7.812 Atomic orbital electron populations 1.86653 1.18407 1.80207 1.49671 1.25031 0.83506 1.11512 0.97829 0.94193 0.90276 0.71891 0.77069 1.19583 1.06266 0.91484 0.98140 1.19087 0.91379 0.91043 0.87197 1.86291 1.76520 1.19643 1.38905 1.23222 1.03206 0.78515 0.95893 1.23976 0.77991 0.97587 0.86245 0.87508 1.88225 1.49858 1.77008 1.15209 1.22985 0.92237 0.99356 0.87787 1.22547 0.95571 1.00236 0.84228 0.87165 1.46477 1.57740 1.09117 1.18061 1.18721 0.76269 0.80949 0.87233 1.90784 1.47970 1.48079 1.48360 1.20450 1.05354 0.95907 0.94512 1.20420 1.05801 0.92731 0.97382 1.21159 0.93002 1.01660 0.90568 1.21957 0.95974 0.90894 1.01284 1.21979 0.94796 0.99841 0.93460 1.21176 0.93241 0.97486 0.94074 1.18847 0.75493 0.87252 0.81877 1.90831 1.52404 1.14640 1.78513 1.22963 0.96346 1.00364 0.82753 1.88253 1.27910 1.71410 1.42869 1.21554 1.05100 1.02033 0.93486 1.21212 0.94546 0.91400 0.98865 1.21692 1.09193 0.95235 0.95477 1.96764 1.84219 1.72608 1.42782 1.21002 0.95275 1.00532 0.90873 0.76956 0.87323 1.19397 1.22651 0.87384 0.86807 0.90437 0.86965 0.83039 0.80635 0.80482 0.82463 0.90394 0.87465 0.81819 0.82582 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -4.90 12.88 -148.98 -1.92 -6.82 16 2 C -0.07 -0.39 2.37 71.23 0.17 -0.23 16 3 Si 0.76 1.76 30.25 68.60 2.07 3.84 16 4 C -0.15 -0.67 5.27 -19.77 -0.10 -0.77 16 5 C 0.16 0.67 6.66 22.50 0.15 0.82 16 6 O -0.30 -1.94 9.26 -72.96 -0.68 -2.61 16 7 C 0.07 -0.03 4.83 71.98 0.35 0.32 16 8 C 0.24 0.62 3.59 71.98 0.26 0.88 16 9 H 0.11 -0.26 8.14 -2.39 -0.02 -0.27 16 10 O -0.38 -2.27 10.43 -121.89 -1.27 -3.54 16 11 C 0.05 0.21 6.33 72.07 0.46 0.67 16 12 C 0.08 0.43 3.07 45.17 0.14 0.57 16 13 H 0.11 1.03 7.59 -2.39 -0.02 1.02 16 14 N -0.57 -2.85 2.53 -739.55 -1.87 -4.72 16 15 C 0.58 2.29 7.35 86.82 0.64 2.93 16 16 O -0.48 -3.20 15.17 -3.53 -0.05 -3.25 16 17 C -0.16 -0.03 6.41 -20.00 -0.13 -0.15 16 18 C -0.16 -0.20 6.40 -20.00 -0.13 -0.33 16 19 C -0.05 0.19 10.09 22.44 0.23 0.42 16 20 C -0.08 0.81 10.03 22.35 0.22 1.04 16 21 C -0.08 0.86 10.03 22.36 0.22 1.08 16 22 C -0.04 0.23 10.09 22.44 0.23 0.46 16 23 C 0.57 3.86 8.02 86.82 0.70 4.56 16 24 O -0.49 -6.33 17.44 -3.55 -0.06 -6.39 16 25 C 0.05 0.26 6.32 72.07 0.46 0.71 16 26 O -0.38 -2.74 10.43 -121.89 -1.27 -4.01 16 27 C -0.20 0.12 9.04 22.36 0.20 0.32 16 28 C -0.04 0.01 9.78 22.27 0.22 0.23 16 29 C -0.14 -0.30 6.22 22.32 0.14 -0.16 16 30 Br -0.05 -0.12 33.70 -20.37 -0.69 -0.80 16 31 C -0.06 -0.15 8.40 22.27 0.19 0.04 16 32 H 0.38 0.96 8.70 -74.06 -0.64 0.32 16 33 H 0.11 0.81 7.84 -2.39 -0.02 0.79 16 34 H -0.27 -1.07 6.68 99.48 0.66 -0.41 16 35 H -0.30 -2.93 7.11 99.48 0.71 -2.22 16 36 H 0.11 -0.48 7.66 -2.39 -0.02 -0.50 16 37 H 0.11 -0.62 7.66 -2.39 -0.02 -0.64 16 38 H 0.08 0.24 6.72 -2.38 -0.02 0.22 16 39 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.15 -0.94 8.06 -2.91 -0.02 -0.96 16 41 H 0.18 -2.77 8.06 -2.91 -0.02 -2.80 16 42 H 0.18 -2.94 8.06 -2.91 -0.02 -2.96 16 43 H 0.16 -1.37 8.06 -2.91 -0.02 -1.40 16 44 H 0.08 0.30 6.65 -2.38 -0.02 0.28 16 45 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.16 -1.06 6.30 -2.91 -0.02 -1.08 16 47 H 0.16 -0.68 8.06 -2.91 -0.02 -0.70 16 48 H 0.15 0.12 4.86 -2.91 -0.01 0.10 16 Total: 0.00 -24.65 424.90 -0.73 -25.38 By element: Atomic # 1 Polarization: -10.88 SS G_CDS: 0.41 Total: -10.46 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 4.60 Total: 13.39 kcal Atomic # 7 Polarization: -2.85 SS G_CDS: -1.87 Total: -4.72 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -5.25 Total: -26.62 kcal Atomic # 14 Polarization: 1.76 SS G_CDS: 2.07 Total: 3.84 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.69 Total: -0.80 kcal Total: -24.65 -0.73 -25.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26869_13594088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.536 kcal (2) G-P(sol) polarization free energy of solvation -24.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds