Wall clock time and date at job start Mon Mar 8 2021 15:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47076 * 240.00097 * 2 1 3 5 5 Si 1.86296 * 109.47143 * 120.00150 * 2 1 3 6 6 C 1.86305 * 109.47202 * 299.99903 * 5 2 1 7 7 C 1.86300 * 109.47057 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47454 * 60.00067 * 5 2 1 9 9 C 1.42898 * 114.00373 * 180.02562 * 8 5 2 10 10 C 1.53003 * 109.47289 * 180.02562 * 9 8 5 11 11 O 1.42894 * 109.47094 * 64.99713 * 10 9 8 12 12 C 1.42909 * 113.99869 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47150 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.46944 * 65.00229 * 13 12 11 15 15 C 1.35919 * 116.99978 * 180.02562 * 14 13 12 16 16 C 1.38708 * 120.04473 * 0.02562 * 15 14 13 17 17 C 1.38165 * 119.95258 * 179.97438 * 16 15 14 18 18 C 1.38324 * 120.04594 * 0.02562 * 17 16 15 19 19 Br 1.89095 * 119.95130 * 180.02562 * 18 17 16 20 20 C 1.38366 * 120.08956 * 359.71711 * 18 17 16 21 21 C 1.38119 * 120.04499 * 0.56165 * 20 18 17 22 22 C 1.50701 * 120.02170 * 179.71903 * 21 20 18 23 23 O 1.42895 * 109.47079 * 254.72640 * 22 21 20 24 24 Si 1.86301 * 109.47149 * 14.72135 * 22 21 20 25 25 H 1.48506 * 109.47302 * 59.99966 * 24 22 21 26 26 H 1.48503 * 109.47334 * 300.00099 * 24 22 21 27 27 H 1.48500 * 109.47376 * 180.02562 * 24 22 21 28 28 H 1.09001 * 109.47196 * 299.99449 * 1 2 3 29 29 H 1.09001 * 109.47410 * 60.00167 * 1 2 3 30 30 H 1.08998 * 109.47034 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47031 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47334 * 299.99861 * 3 2 1 33 33 H 1.08998 * 109.47205 * 60.00057 * 3 2 1 34 34 H 1.09003 * 109.47523 * 299.99692 * 4 2 1 35 35 H 1.09001 * 109.47216 * 59.99618 * 4 2 1 36 36 H 1.08994 * 109.47179 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.46817 * 179.97438 * 6 5 2 38 38 H 1.08998 * 109.47070 * 300.00224 * 6 5 2 39 39 H 1.09003 * 109.46845 * 60.00093 * 6 5 2 40 40 H 1.08998 * 109.47086 * 299.99781 * 7 5 2 41 41 H 1.08998 * 109.47186 * 59.99793 * 7 5 2 42 42 H 1.09001 * 109.47323 * 179.97438 * 7 5 2 43 43 H 1.08994 * 109.47106 * 59.99769 * 9 8 5 44 44 H 1.09006 * 109.46965 * 299.99896 * 9 8 5 45 45 H 1.08998 * 109.46597 * 304.99459 * 10 9 8 46 46 H 1.08994 * 109.47178 * 184.99826 * 10 9 8 47 47 H 1.08999 * 109.46581 * 59.99972 * 12 11 10 48 48 H 1.08991 * 109.47039 * 300.00576 * 12 11 10 49 49 H 1.09002 * 109.47474 * 305.00384 * 13 12 11 50 50 H 1.09002 * 109.47469 * 185.00267 * 13 12 11 51 51 H 1.07994 * 120.02405 * 0.02562 * 16 15 14 52 52 H 1.08007 * 119.97598 * 180.02562 * 17 16 15 53 53 H 1.08005 * 119.97629 * 180.29567 * 20 18 17 54 54 H 1.09001 * 109.47380 * 134.72037 * 22 21 20 55 55 H 0.96708 * 113.99763 * 299.99687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8776 1.5214 8 8 1.6074 -2.4160 1.5211 9 6 2.0286 -3.1814 2.6519 10 6 1.4638 -4.5995 2.5469 11 8 2.0331 -5.2561 1.4127 12 6 1.5701 -6.5948 1.2230 13 6 2.2415 -7.1963 -0.0132 14 8 3.6471 -7.3116 0.2169 15 6 4.3967 -7.8313 -0.7907 16 6 3.7917 -8.2217 -1.9763 17 6 4.5556 -8.7493 -2.9995 18 6 5.9227 -8.8889 -2.8421 19 35 6.9657 -9.6107 -4.2445 20 6 6.5289 -8.4952 -1.6623 21 6 5.7681 -7.9726 -0.6347 22 6 6.4281 -7.5498 0.6524 23 8 6.1493 -8.5138 1.6697 24 14 8.2697 -7.4320 0.3966 25 1 8.5596 -6.4302 -0.6606 26 1 8.7975 -8.7566 -0.0185 27 1 8.9201 -7.0160 1.6651 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 1.8930 -0.5142 3.9322 38 1 1.8933 1.0276 3.0423 39 1 0.4400 -0.0001 3.0423 40 1 4.3777 -1.3911 0.6315 41 1 4.3769 0.1502 1.5217 42 1 4.3774 -1.3910 2.4116 43 1 1.6638 -2.7113 3.5651 44 1 3.1175 -3.2252 2.6758 45 1 0.3808 -4.5517 2.4335 46 1 1.7102 -5.1565 3.4508 47 1 0.4892 -6.5887 1.0823 48 1 1.8190 -7.1929 2.0995 49 1 2.0659 -6.5497 -0.8730 50 1 1.8233 -8.1836 -0.2096 51 1 2.7244 -8.1125 -2.0998 52 1 4.0849 -9.0530 -3.9230 53 1 7.5972 -8.6005 -1.5431 54 1 6.0407 -6.5776 0.9571 55 1 5.2072 -8.6277 1.8560 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26869_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:55:45 Heat of formation + Delta-G solvation = -184.717469 kcal Electronic energy + Delta-G solvation = -32773.060652 eV Core-core repulsion = 28366.272116 eV Total energy + Delta-G solvation = -4406.788536 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 434.113 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58049 -39.43137 -38.62387 -37.58354 -37.33418 -36.81996 -33.29898 -32.68303 -31.82823 -29.99944 -29.42910 -29.10879 -29.05136 -27.83495 -27.37531 -26.83775 -24.84727 -23.43019 -22.67160 -22.49040 -20.40894 -19.53351 -18.36511 -18.11185 -17.92561 -17.55531 -16.92897 -16.50277 -16.48269 -16.17709 -15.96479 -15.73786 -15.50146 -15.43141 -15.25966 -14.84712 -14.77266 -14.57085 -14.52298 -14.04931 -13.98876 -13.90928 -13.53142 -13.36833 -13.20651 -13.15561 -13.00295 -12.95172 -12.92525 -12.76971 -12.64234 -12.42903 -12.39749 -12.29524 -12.12261 -11.91843 -11.78031 -11.67814 -11.48986 -11.44691 -11.36087 -11.21165 -11.16500 -11.05015 -10.52404 -10.28544 -10.18757 -10.04144 -9.24809 -0.00512 0.00627 0.58588 1.13829 1.44101 1.45840 1.56082 1.81310 1.88885 2.02485 2.14824 2.36895 2.50729 2.71666 3.42769 3.58369 3.85497 3.87168 3.99992 4.05663 4.12431 4.12979 4.13190 4.17879 4.21434 4.26081 4.35409 4.42007 4.45452 4.50005 4.53618 4.61152 4.62228 4.70583 4.73644 4.76022 4.79695 4.80191 4.82066 4.83719 4.85886 4.92485 5.00134 5.01565 5.06463 5.09228 5.09812 5.20909 5.34310 5.39817 5.41226 5.44648 5.54485 5.60455 5.64863 6.19304 6.32434 6.62790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.382 4.382 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.314 2.686 6 C -0.515 4.515 7 C -0.520 4.520 8 O -0.634 6.634 9 C 0.074 3.926 10 C 0.055 3.945 11 O -0.399 6.399 12 C 0.058 3.942 13 C 0.052 3.948 14 O -0.310 6.310 15 C 0.159 3.841 16 C -0.198 4.198 17 C -0.045 4.045 18 C -0.137 4.137 19 Br -0.052 7.052 20 C -0.069 4.069 21 C -0.153 4.153 22 C -0.078 4.078 23 O -0.548 6.548 24 Si 1.017 2.983 25 H -0.242 1.242 26 H -0.259 1.259 27 H -0.264 1.264 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.105 0.895 51 H 0.165 0.835 52 H 0.155 0.845 53 H 0.138 0.862 54 H 0.086 0.914 55 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 0.870 2.657 6.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.425 4.425 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.444 2.556 6 C -0.617 4.617 7 C -0.621 4.621 8 O -0.594 6.594 9 C -0.002 4.002 10 C -0.021 4.021 11 O -0.319 6.319 12 C -0.018 4.018 13 C -0.022 4.022 14 O -0.223 6.223 15 C 0.112 3.888 16 C -0.217 4.217 17 C -0.065 4.065 18 C -0.216 4.216 19 Br 0.034 6.966 20 C -0.089 4.089 21 C -0.155 4.155 22 C -0.187 4.187 23 O -0.354 6.354 24 Si 0.838 3.162 25 H -0.165 1.165 26 H -0.184 1.184 27 H -0.188 1.188 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.123 0.877 51 H 0.183 0.817 52 H 0.173 0.827 53 H 0.155 0.845 54 H 0.104 0.896 55 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.428 0.589 1.935 3.980 hybrid contribution -1.374 0.467 0.196 1.465 sum -4.803 1.056 2.131 5.359 Atomic orbital electron populations 1.21523 0.94066 1.01750 1.01875 1.25911 1.00541 1.02928 1.13093 1.21602 1.01149 0.94757 1.02271 1.21512 1.00749 0.99946 0.97006 0.76222 0.62105 0.53012 0.64266 1.27058 1.06986 1.09754 1.17905 1.27153 1.26038 1.04676 1.04220 1.85385 1.79237 1.46429 1.48334 1.22316 0.99390 0.90832 0.87622 1.22801 0.98318 0.92004 0.88995 1.87987 1.68453 1.26781 1.48636 1.22693 0.98438 0.83408 0.97296 1.23219 0.77477 1.02122 0.99365 1.86110 1.21247 1.77098 1.37884 1.18934 0.90299 0.91672 0.87937 1.21563 1.02183 1.05019 0.92967 1.21214 0.90988 0.94633 0.99676 1.21712 0.95495 1.09367 0.95037 1.96749 1.70239 1.84037 1.45623 1.20995 1.00390 0.95941 0.91563 1.19669 0.91756 1.06019 0.98039 1.25121 1.13382 0.94680 0.85469 1.86662 1.31069 1.61531 1.56184 0.84442 0.71311 0.80386 0.80101 1.16506 1.18380 1.18837 0.91919 0.93392 0.92545 0.92076 0.93134 0.91639 0.92735 0.93327 0.92566 0.90806 0.90462 0.90883 0.91786 0.90542 0.91197 0.89053 0.91847 0.91707 0.90240 0.89070 0.91208 0.90660 0.87666 0.81732 0.82698 0.84474 0.89593 0.77317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.04 7.85 71.98 0.56 0.52 16 2 C -0.38 -0.02 0.53 -10.79 -0.01 -0.03 16 3 C -0.14 0.11 7.85 71.98 0.56 0.68 16 4 C -0.13 -0.25 7.85 71.98 0.56 0.32 16 5 Si 1.31 -2.56 8.45 68.60 0.58 -1.98 16 6 C -0.52 1.45 8.50 113.37 0.96 2.42 16 7 C -0.52 0.11 8.50 113.37 0.96 1.08 16 8 O -0.63 -0.49 8.52 -144.34 -1.23 -1.72 16 9 C 0.07 -0.19 5.51 71.98 0.40 0.20 16 10 C 0.06 -0.18 6.32 71.98 0.45 0.28 16 11 O -0.40 -0.37 10.27 -135.05 -1.39 -1.76 16 12 C 0.06 -0.30 6.32 71.98 0.45 0.15 16 13 C 0.05 -0.27 5.12 71.98 0.37 0.10 16 14 O -0.31 -0.08 9.01 -88.00 -0.79 -0.87 16 15 C 0.16 0.28 6.62 22.50 0.15 0.43 16 16 C -0.20 0.22 9.04 22.36 0.20 0.42 16 17 C -0.05 -0.02 9.78 22.27 0.22 0.20 16 18 C -0.14 -0.54 6.22 22.32 0.14 -0.41 16 19 Br -0.05 -0.21 33.70 -20.37 -0.69 -0.90 16 20 C -0.07 -0.35 8.40 22.27 0.19 -0.16 16 21 C -0.15 -0.63 5.28 -19.77 -0.10 -0.74 16 22 C -0.08 -0.28 2.33 71.24 0.17 -0.11 16 23 O -0.55 -2.42 12.65 -148.98 -1.89 -4.30 16 24 Si 1.02 3.84 25.73 68.60 1.77 5.61 16 25 H -0.24 -0.70 7.11 99.48 0.71 0.00 16 26 H -0.26 -1.35 6.74 99.48 0.67 -0.68 16 27 H -0.26 -1.43 7.11 99.48 0.71 -0.73 16 28 H 0.06 -0.10 7.79 -2.39 -0.02 -0.11 16 29 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 31 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 32 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 34 H 0.05 0.16 7.97 -2.39 -0.02 0.14 16 35 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.06 0.07 7.79 -2.39 -0.02 0.05 16 37 H 0.07 -0.31 7.48 -2.39 -0.02 -0.32 16 38 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 39 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 40 H 0.06 0.11 7.79 -2.39 -0.02 0.09 16 41 H 0.08 -0.09 7.79 -2.39 -0.02 -0.10 16 42 H 0.07 -0.07 7.48 -2.39 -0.02 -0.09 16 43 H 0.09 -0.69 7.21 -2.39 -0.02 -0.71 16 44 H 0.06 -0.18 7.22 -2.38 -0.02 -0.19 16 45 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 47 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 48 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 49 H 0.08 -0.36 7.66 -2.39 -0.02 -0.37 16 50 H 0.11 -1.06 7.66 -2.39 -0.02 -1.08 16 51 H 0.17 -1.12 6.30 -2.91 -0.02 -1.14 16 52 H 0.16 -0.53 8.06 -2.91 -0.02 -0.55 16 53 H 0.14 0.60 4.89 -2.91 -0.01 0.58 16 54 H 0.09 0.19 7.83 -2.39 -0.02 0.17 16 55 H 0.38 -0.18 8.61 -74.05 -0.64 -0.82 16 Total: 0.00 -12.86 456.94 3.55 -9.31 By element: Atomic # 1 Polarization: -9.68 SS G_CDS: 0.94 Total: -8.74 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.25 Total: 5.36 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -5.30 Total: -8.66 kcal Atomic # 14 Polarization: 1.28 SS G_CDS: 2.35 Total: 3.63 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.69 Total: -0.90 kcal Total: -12.86 3.55 -9.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26869_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.411 kcal (2) G-P(sol) polarization free energy of solvation -12.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds