Wall clock time and date at job start Mon Mar 8 2021 13:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35911 * 117.00088 * 179.97438 * 10 9 8 12 12 C 1.38702 * 120.04812 * 359.73329 * 11 10 9 13 13 C 1.38164 * 119.95597 * 179.69997 * 12 11 10 14 14 C 1.38323 * 120.04110 * 0.56357 * 13 12 11 15 15 Br 1.89100 * 119.95215 * 179.74840 * 14 13 12 16 16 C 1.38368 * 120.09536 * 359.73385 * 14 13 12 17 17 C 1.38118 * 120.04249 * 359.96854 * 16 14 13 18 18 C 1.50701 * 120.02176 * 180.02562 * 17 16 14 19 19 O 1.42893 * 109.47203 * 105.02686 * 18 17 16 20 20 Si 1.86299 * 109.47147 * 345.02084 * 18 17 16 21 21 H 1.48500 * 109.47014 * 60.00281 * 20 18 17 22 22 H 1.48494 * 109.47126 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47236 * 300.00387 * 20 18 17 24 24 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 8 7 26 26 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 27 27 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 28 28 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 31 31 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 32 32 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 33 33 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 34 34 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 35 35 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 36 36 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 38 38 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 39 39 H 1.08006 * 120.02061 * 359.96499 * 12 11 10 40 40 H 1.07995 * 119.97769 * 180.29706 * 13 12 11 41 41 H 1.07998 * 119.97932 * 179.97438 * 16 14 13 42 42 H 1.09003 * 109.46969 * 225.02170 * 18 17 16 43 43 H 0.96696 * 114.00665 * 59.99630 * 19 18 17 44 44 H 1.07999 * 119.99927 * 180.24100 * 24 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9374 -3.5033 6.0756 12 6 5.1776 -4.0805 7.0823 13 6 5.8012 -4.7015 8.1474 14 6 7.1822 -4.7378 8.2160 15 35 8.0330 -5.5823 9.6785 16 6 7.9421 -4.1573 7.2159 17 6 7.3226 -3.5408 6.1464 18 6 8.1506 -2.9092 5.0571 19 8 8.1234 -3.7406 3.8953 20 14 9.9085 -2.7196 5.6442 21 1 10.4656 -4.0551 5.9781 22 1 10.7246 -2.0979 4.5707 23 1 9.9367 -1.8556 6.8515 24 6 3.1758 -0.8216 3.8171 25 6 2.7155 -0.1698 2.6883 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5739 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1206 2.2703 0.8901 32 1 2.1206 -1.9058 -1.5212 33 1 2.1206 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5214 35 1 2.5356 -2.7987 0.5825 36 1 3.3559 -3.9596 2.5930 37 1 3.5293 -2.3833 5.9053 38 1 3.5332 -3.9242 5.0141 39 1 4.0992 -4.0481 7.0315 40 1 5.2099 -5.1552 8.9290 41 1 9.0202 -4.1863 7.2716 42 1 7.7417 -1.9290 4.8120 43 1 7.2378 -3.8831 3.5342 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26869_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:52:18 Heat of formation + Delta-G solvation = -66.960231 kcal Electronic energy + Delta-G solvation = -25348.370883 eV Core-core repulsion = 21693.298982 eV Total energy + Delta-G solvation = -3655.071901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68898 -40.17791 -38.67151 -37.51377 -33.57144 -32.78457 -32.54457 -31.97176 -29.81226 -29.56670 -28.49082 -28.46372 -27.48535 -26.80286 -23.75166 -23.57456 -22.53993 -21.97336 -19.51612 -18.29708 -18.08117 -17.25828 -17.15846 -16.70535 -16.25951 -15.86143 -15.74017 -15.58239 -15.27767 -14.74440 -14.49140 -14.42036 -14.25471 -14.19597 -14.00628 -13.93978 -13.87431 -13.59497 -13.32218 -13.30745 -13.15051 -13.06984 -12.93475 -12.66022 -12.55049 -12.19515 -12.00813 -11.78343 -11.38475 -11.35163 -11.18144 -11.09100 -10.98598 -10.95532 -10.90432 -10.18479 -9.86780 -9.78409 -9.25868 -0.00785 0.00801 0.06478 0.46060 0.63946 1.21927 1.53278 1.57646 1.63741 1.79391 1.79507 2.00493 2.10529 2.36395 2.48761 2.92617 3.39624 3.50458 3.66623 3.67898 3.85326 3.91064 4.00616 4.03397 4.11197 4.15641 4.26656 4.39911 4.42359 4.59308 4.59762 4.65475 4.66586 4.70443 4.71076 4.71407 4.71638 4.90174 4.90777 4.98316 5.05534 5.06375 5.31689 5.35802 5.40626 5.44505 5.48962 5.52080 5.55212 6.01886 6.11115 6.60842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.359 4.359 6 C -0.091 4.091 7 C -0.105 4.105 8 C -0.091 4.091 9 C 0.099 3.901 10 O -0.303 6.303 11 C 0.159 3.841 12 C -0.201 4.201 13 C -0.044 4.044 14 C -0.123 4.123 15 Br -0.044 7.044 16 C -0.055 4.055 17 C -0.139 4.139 18 C -0.081 4.081 19 O -0.535 6.535 20 Si 1.005 2.995 21 H -0.249 1.249 22 H -0.252 1.252 23 H -0.245 1.245 24 C -0.105 4.105 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.080 0.920 43 H 0.369 0.631 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.020 1.822 -1.332 4.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.400 4.400 6 C -0.109 4.109 7 C -0.123 4.123 8 C -0.091 4.091 9 C 0.025 3.975 10 O -0.217 6.217 11 C 0.112 3.888 12 C -0.221 4.221 13 C -0.064 4.064 14 C -0.202 4.202 15 Br 0.041 6.959 16 C -0.075 4.075 17 C -0.141 4.141 18 C -0.189 4.189 19 O -0.341 6.341 20 Si 0.824 3.176 21 H -0.172 1.172 22 H -0.175 1.175 23 H -0.169 1.169 24 C -0.123 4.123 25 C -0.109 4.109 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.098 0.902 43 H 0.217 0.783 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.133 1.653 -0.512 2.747 hybrid contribution -1.655 -0.114 -0.162 1.667 sum -3.788 1.540 -0.674 4.144 Atomic orbital electron populations 1.26126 1.20420 1.04595 1.04540 0.78186 0.66843 0.66142 0.63675 1.26140 1.06520 1.18532 1.04597 1.26139 1.06530 1.08044 1.15068 1.27498 1.02794 0.99530 1.10208 1.21091 0.97375 0.94666 0.97772 1.21146 0.98770 0.99901 0.92507 1.19404 1.01349 0.94145 0.94234 1.21721 0.78137 1.00690 0.96957 1.86150 1.21496 1.72468 1.41579 1.18857 0.91381 0.91532 0.86982 1.21293 1.00573 1.04308 0.95888 1.20970 0.92393 0.95650 0.97342 1.21620 0.95020 1.06770 0.96829 1.96776 1.79743 1.78801 1.40551 1.20937 1.00291 0.94544 0.91716 1.19630 0.91247 1.04565 0.98698 1.25183 1.12162 0.95433 0.86110 1.86689 1.33892 1.70955 1.42543 0.84598 0.72361 0.81008 0.79634 1.17250 1.17524 1.16860 1.21147 0.98737 0.93515 0.98938 1.21089 0.97408 0.99815 0.92618 0.91175 0.90972 0.91162 0.91010 0.90903 0.91178 0.91161 0.90908 0.90997 0.85823 0.86060 0.90732 0.90679 0.84201 0.84277 0.84193 0.90230 0.78292 0.86133 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.92 8.65 101.05 0.87 1.79 16 2 Si 1.06 -3.24 12.32 -169.99 -2.09 -5.33 16 3 C -0.45 0.99 8.53 101.05 0.86 1.85 16 4 C -0.45 0.99 8.53 101.05 0.86 1.85 16 5 C -0.36 0.35 4.59 -39.58 -0.18 0.16 16 6 C -0.09 0.05 9.29 -39.58 -0.37 -0.31 16 7 C -0.11 0.03 9.70 -39.58 -0.38 -0.36 16 8 C -0.09 0.01 5.51 -104.63 -0.58 -0.57 16 9 C 0.10 -0.12 4.86 36.00 0.18 0.05 16 10 O -0.30 -0.15 9.02 -19.46 -0.18 -0.32 16 11 C 0.16 0.14 6.62 -39.22 -0.26 -0.12 16 12 C -0.20 0.04 9.04 -39.44 -0.36 -0.31 16 13 C -0.04 -0.01 9.78 -39.58 -0.39 -0.40 16 14 C -0.12 -0.20 6.22 -39.50 -0.25 -0.45 16 15 Br -0.04 -0.07 33.70 -68.01 -2.29 -2.36 16 16 C -0.06 -0.11 8.40 -39.58 -0.33 -0.44 16 17 C -0.14 -0.23 5.28 -104.48 -0.55 -0.78 16 18 C -0.08 -0.11 2.33 36.01 0.08 -0.03 16 19 O -0.54 -1.21 12.65 -35.23 -0.45 -1.66 16 20 Si 1.00 1.20 25.75 -169.99 -4.38 -3.18 16 21 H -0.25 -0.43 6.73 56.52 0.38 -0.05 16 22 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 23 H -0.25 -0.18 7.11 56.52 0.40 0.23 16 24 C -0.11 0.01 9.70 -39.58 -0.38 -0.38 16 25 C -0.09 0.05 9.29 -39.58 -0.37 -0.32 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 32 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.12 -0.29 7.43 -52.49 -0.39 -0.68 16 36 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 37 H 0.07 -0.18 7.59 -51.93 -0.39 -0.57 16 38 H 0.08 -0.19 7.62 -51.93 -0.40 -0.58 16 39 H 0.14 -0.34 6.30 -52.48 -0.33 -0.67 16 40 H 0.14 -0.19 8.06 -52.49 -0.42 -0.62 16 41 H 0.14 0.18 4.89 -52.49 -0.26 -0.08 16 42 H 0.08 0.05 7.83 -51.93 -0.41 -0.36 16 43 H 0.37 0.09 8.60 45.56 0.39 0.48 16 44 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 45 H 0.12 -0.28 7.43 -52.49 -0.39 -0.67 16 LS Contribution 393.69 15.07 5.93 5.93 Total: 0.00 -4.63 393.69 -10.94 -15.57 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: -5.95 Total: -9.90 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.54 Total: 1.25 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -0.62 Total: -1.98 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: -6.47 Total: -8.51 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.29 Total: -2.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -4.63 -10.94 -15.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26869_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.390 kcal (2) G-P(sol) polarization free energy of solvation -4.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds